You are on page 1of 8

ACTIVITY NO.

5
ENZYME KINETICS OF α -AMYLASE
Cecilia, Jasmin S. (1), Chan, Janelle Mae A. (2), So, Shannen Louise T. (3)
CHEM 43 LB1A
Ms. Fatsy Cruz

ABSTRACT
Enzymes, most of which are proteins, play an important role as they increase the otherwise slow reaction
rates of biochemical reactions. This is possible when the substrate binds to the active site of an enzyme and
turns into its respective product, as is the case of the enzyme α -amylase used in this activity, which catalyzes
the hydrolysis of starch into glucose. In order to determine the effects of incubation time, temperature, pH,
and substrate concentration on the activity of α -amylase acquired from human saliva, a starch standard curve
was first prepared. This was used in determining starch concentrations from the absorbances of iodine-starch
complexes obtained at 620 nm using a UV-Vis spectrophotometer, as the time was varied from 0, 3, 5, 7, to
10 minutes; the temperature from 10, 40, 60, to 80 ° C; ​the pH from 2.0, 4.0, 6.7, 7.4, to 9.0; and finally, the
substrate concentration from 0.10, 0.08, 0.05, 0.02, to 0.01%. Plots of starch concentration versus each of the
variables were created, except for the variable of substrate concentration, for which a 1/V versus 1/[S] plot
was made and the K​M and V​max values were calculated through the Lineweaver-Burk equation. The standard
curve obtained, with an R​2 value of 0.9307, had an equation of y = 95.432x + 1.2697. The following trends
regarding the four factors were observed: the longer the incubation time, the less the substrate concentration;
the plot for incubation temperature had a graph with an upward concavity; the plot for pH had a relative
minimum at around 7.05; and the greater the initial substrate concentration, the faster the reaction velocity.
Based from the Lineweaver-Burk plot obtained, a K​M value of 0.011 and a V​max value of 5.27*10​-4​. These were
calculated from the linear equation y = 21.212x + 1897.6, which had an R​2 ​value of 0.9456. In conclusion,
optimal enzyme activity occurs at 10 minutes of incubation time, 40 ° C incubation temperature, a pH value of
around 7.05, and a relatively greater initial substrate concentration.

KEYWORDS:​ enzyme kinetics, α -amylase, iodine-starch complex, factors on enzyme activity, Lineweaver-Burk
equation, UV-Vis spectrophotometry

INTRODUCTION One approach to enzyme kinetics is the


In biological systems, an enzyme acts as a catalyst by Michaelis-Menten Model wherein it relates the velocity of
lowering the activation energy of the reaction, and may be the reaction to the substrate concentration where the
able to accelerate the reaction by up to 10​17 than how they ​ inds reversibly with the enzyme ​E to form the
substrate ​S b
would normally proceed. It participates in the reaction enzyme-substrate complex ​ES, ​which then reacts to form
without being permanently changed nor appearing as final the product and the free enzyme irreversibly.​[5] The model
products.​[1, 2] ​Enzymes are also highly selective and would can be shown as:
only react with one specific reactant called a substrate. This
selectivity allows for them to distinguish between different
substances even up to their optical isomers.​[2]

Enzymes have active sites that the target substrates Figure 1. ​Formation and Breakdown of the ES Complex
would bind to. These active sites are composed of amino Source: ​http://2016.igem.org/Team:Freiburg/Delivery
acids that would form a cleft or a pocket where the
substrate stays during the reaction. The cleft would provide This relationship can also be represented
a better environment for the reaction to proceed – by mathematically using ​Equation 1.
excluding water, for example.​ [3]

Enzyme kinetics is the study of the rate at which a


reaction catalyzed by enzymes proceeds. The reaction rate
is measured and various factors – incubation time,
temperature, pH, and concentration of the substrate – are
Equation 1.​ Michaelis-Menten Equation​[5]
observed with regards to their effects. By studying the
kinetics of an enzyme, its catalytic mechanism and Where V is the reaction rate, V​max is the maximum

enzymatic activity may also be analyzed. [4] velocity of the catalyzed reaction, [​S]​ is the substrate
concentration and K​M is the concentration of the substrate
at half the maximum rate. [5,​ 6] V​max and K​M​, under defined then transferred into 5 separate test tubes, which were
conditions, can be used to characterize the enzyme, thus previously labelled t = 0, t = 3, t = 5, t = 7, and t = 10 to

are also called kinetic parameters. [2] indicate the number of minutes the solution was incubated
before 100 ​µL of HCl was added​. In the test tube labelled
In order to represent the data more accurately and t=0, 100 µL of HCl was added immediately. For the test
easier, a double reciprocal plot of the Michaelis-Menten tube labelled t=3, the solution was incubated at room
equation was derived. The Lineweaver-Burk plot linearizes temperature for 3 minutes before 100 ​µL of HCl was added.
the data making it more precise and would, therefore, give This incubation and addition of 100 µL of concentrated HCl
a more accurate calculation of the V​max and subsequently, was repeated, but at varying incubation times, for test tubes
​ 8] The linear equation used to determine the
K​M​. [7, labelled t = 5, 7, and 10 minutes. After all test tubes were
parameters can be shown as: incubated at their respective times, and 100 µL of HCl were
added, 20 µL of I​2 in
​ KI solution and 5 mL of distilled water
was added to each test tube. Their absorbances were read
at 620 nm, and the starch concentration vs incubation time
was then graphed.

Effect of Temperature on Enzyme Activity​. Using 0.2%


Equation 2. ​Lineweaver-Burk Equation
starch solution and phosphate buffer pH 6.7, 20 mL of 0.1%
Source:https://pharmafactz.com/medicinal-chemistry-understandi starch solution was prepared. In four separate 10 mL test
ng-enzyme-kinetics/ tubes, 4.5 mL of this starch solution and 0.5 mL of 0.9%
NaCl were mixed together in each of the test tubes. These
Extracted from human saliva, α -amylase was used as test tubes were then incubated in water baths of varying
the enzyme in this experiment. The α -amylase breaks temperatures of 10°C, 40°C, 60°C, and 80°C respectively,
down starch chains, forming two or three glucose units.​[9] for 5 minutes. Without removing these test tubes from their
The starch concentration after the addition of α -amylase – water baths, 100 µL of the previously prepared saliva
and consequently, the enzymatic activity – can be solution was added to each, before being further incubated
measured through colorimetry using a UV-Visible for 5 minutes more. An mL of each aliquot was then put into
Spectrophotometer. Iodine, through I​2 ​in KI, is added to form separate test tubes, before 100 µL of concentrated HCl
an iodine-starch complex with the starch, appearing dark was added to each aliquot. Just before reading the
blue/violet, and because of its colorimetric properties, the absorbances of each aliquot at 620 nm, 20 µL of I​2 in ​ KI
less the starch concentration is, the lighter the color would solution and 5 mL of distilled water was added to all the test
be. The intensity of the color can be quantified by tubes. The starch concentration vs temperature was then
measuring the absorbance at 620nm. ​ [10, 11] graphed.

In this experiment, the researchers aimed to determine Effect of pH on Enzyme Activity.​ In 5 separate test
the effects of various factors that affect enzyme kinetics, to tubes, 2.50 mL of 0.2% starch solution, 0.5 mL of 0.9%
construct a standard curve for the determination of product NaCl solution, and 2.0 mL of 0.1 M phosphate buffer with
concentration, and to determine the values of kinetic varying pH were mixed, making the solutions have the
parameters, K​M​ and V​max​. following pH: 2.0, 4.0, 6.7, 7.4, 9.0. To each test tube, 100
µL of the saliva solution was added. They were then
EXPERIMENTAL incubated for 5 minutes. From each test tube, 1 mL aliquot
Preparation of Starch Standard Curve.​ From 0.2% of each solution was put into separate test tubes, and 100
starch solution, 2 mL of the following starch concentrations µL of concentrated HCl was added to each. Before reading
were prepared in 0.1 M phosphate buffer (pH 6.7): 0% their absorbance at 620 nm, 20 µL of I​2 in
​ KI solution and 5
(blank solution), 0.10%, 0.08%, 0.05%, 0.02%, 0.01%, and mL of distilled water was added to all test tubes. The starch
0.005%. An mL of each starch concentration was concentration vs pH was then graphed.
transferred to separate test tubes, and 20 ​µL of KI, along
with 5 mL of water, was added to each solution​. The Effect of Substrate Concentration on Enzyme Activity.​
absorbance of each solution was measured immediately at Using 0.2% starch solution and 0.1 M phosphate buffer (pH
620 nm, and the starch concentration vs absorbance was 6.7), a 4.5 mL starch solution with the following starch
plotted, generating a standard curve. concentrations were prepared in separate test tubes:
0.10%, 0.08%, 0.05%, 0.02%, and 0.01%. To each test
Effect of Incubation Time on Enzyme Activity​. A 10 mL tube, 0.5 mL saliva solution was added before incubating
of 0.1% starch solution was prepared using 0.2% starch each for 5 minutes. After 5 minutes of incubation, 1 mL of
solution and phosphate buffer pH 6.7. A saliva solution was each solution was placed in separate test tubes, and 100
made by mixing 28.5 mL phosphate buffer and 1.5 mL µL of concentrated HCl was added. The absorbance of
human saliva. In a 20 mL test tube, 9 mL of the previously each test tube was then measured at 620 nm after adding
stated starch solution was mixed with 1 mL of the prepared 20 µL of I​2 in KI solution and 5 mL of distilled water to each
saliva solution. An mL of this starch-saliva solution was test tube. The reciprocals of average reaction velocity and
substrate concentration were then graphed, and the Km
and Vmax were determined.
Table 2.​ Absorbances at Varying Incubation Times
RESULTS
A. Preparation of Starch Standard Curve Time Absorbance Concentration
Different starch concentrations were prepared for the (minutes)
standard curve. To get the diluted version as shown in
Table 1, each starch concentration was multiplied by 1 mL 0 0.462 -0.016927
and divided by 6.02 mL by the M​1​V​1 = M​2​V​2 formula. From
3 0.240 -0.02158
this table, the absorbance, with a range of 1.348 to 2.859,
was seen to increase as the concentration increased. 5 0.237 -0.02164

Table 1. Absorbances of Varying Iodine-Starch Complex 7 0.231 -0.02177


Concentrations
Diluted Starch 10 0.223 -0.02194
Starch solution
Concentration Absorbance
(%)
(%)

0.10 0.0166113 2.859

0.08 0.01328904 2.363

0.05 0.00830565 2.382

0.02 0.00332226 1.495

0.01 0.00166113 1.372


Figure 3.​ Starch Concentration vs. Incubation Time
0.005 0.00083056 1.348
C. Effect of Temperature on Enzyme Activity
The concentrations, as presented in Table 3, were
The plot, as shown in Figure 2, obtained by having the obtained by inputting the absorbance values as the
concentration values as the x-values and the absorbances y-values and solving for x.
as the y-values resulted in Equation 3, with an R​2 value of
0.9307. Table 3.​ Absorbances at Varying Temperatures
Temperature Absorbance Concentration
y = 95.432x + 1.2697 ( ° C)
Equation 3.​ Standard Curve
10 0.401 0.01821

40 0.621 0.0136

60 0.298 0.02036

80 N/A N/A

A trend observed from this data was that the starch


concentration was lowest at 40 ° C, while the
concentrations at 10 and 60 ° C were higher, yielding Figure
Figure 2. ​Standard Curve 4, which had an upward concavity.

B. Effect of Incubation Time on Enzyme Activity


The concentrations, as presented in Table 2, were
obtained by solving for x using Equation 3. A trend, as
reflected in Figure 3, where the substrate concentration
decreases as the incubation time increases, was observed.

Figure 4. ​Starch Concentration vs Temperature


The starch solution with 80 ° C incubation temperature Table 5.​ Absorbances at Varying Substrate Concentrations
produced a suspension of precipitates, as shown in Figure Average
5. Therefore, no absorbance value was obtained for this Starch Initial Reaction
sample. Absorbance Final [S] Velocity
solution [S]
( Δ [S]/ Δ t)

0.10% 0.160 0.07352 -0.011628 0.0170315


941 2 2

0.08% 0.170 0.05882 -0.011523 0.0140693


353 4 8

Figure 5. ​Starch Sample with 80 ° C Incubation 0.05% 0.130 0.03676 -0.011942 0.0097414
Temperature 471 5 5

0.02% 0.039 0.01470 -0.012215 0.0053841


D. Effect of pH on Enzyme Activity 588 7

The concentrations, as shown in Table 4, were obtained 0.01% 0.104 0.00735 -0.012896 0.0040498
from Equation 3 as the calculated x-values. 294 1 1

Table 4.​ Absorbances at Varying pH


Upon plotting the 1/[S] values as the x-values and the 1/V
pH Absorbance Concentration values as the y-values, a linear graph, with Equation 4 and
an R​2​ value of 0.9456, was obtained, as shown in Figure 7.
2.0 0.734 -0.01123

4.0 0.876 -0.008251

6.7 0.259 -0.02118

7.4 0.253 -0.02131

9.0 0.608 -0.01387

The plot obtained from these data, as shown in Figure 6 Figure 7. ​Lineweaver-Burk Plot
had a relative minimum value in between pH 6.7 and 7.4,
indicating that starch concentration is lowest in between y = 21.212x + 1897.6
these two points. Equation 4.​ Lineweaver-Burk Equation

From this linear graph, the V​max​ value was 5.27*10​-4​ and the
K​M​ value was 0.011.

DISCUSSION
Enzymes are biological catalysts responsible for
accelerating biochemical reactions that would otherwise
take a very long time. Enzymes lower the activation energy
of the reaction by providing an easier path for the
substrates to react on, making the formation of products
Figure 6. ​Starch Concentration vs pH faster. They have what is called an active site, or cleft,
where the substrate binds and sits through the reaction.
E. Effect of Substrate Concentration on Enzyme Activity The clefts will then position the substrates in the right
orientation or wherein the bond breaking and bond forming
The initial concentration of substrate, [S], was obtained happen more obligingly to form the transition state. They
by first taking dilution into account. As a sample calculation, can also control the Each enzyme only acts on a certain
0.10% was multiplied by 4.5 mL aliquot and divided by the specific substrate and this is due to the characteristic of the
final volume, 6.12 mL. The final concentration of [S] was active site which is given by the amino acids making it up -
obtained from Equation 3. The average reaction velocity their acidity/basicity, 3-D orientation, hydrophilic/
was obtained by subtracting the final [S] from the initial [S] hydrophobic tendencies, and more, altering the shape,
and divided by the total incubation time, 5 minutes, as ​
size, and charge of the cleft, as shown in Figure 8. [12]
presented in Table 5.
by α -helices. The highly conserved amino acid residues,
which are involved in catalysis and substrate binding, are
found in loops of the “C-termini of β − strands ” in the
aforementioned domain. The B-domain protrudes between
the β -sheet #3 and the α -helix #3, and ranges 44 to 133
amino acid residues. It also plays a role in substrate or Ca​2+
Figure 8. ​Induced Fit Model​[12] binding. Calcium binding to the amylase, whose structure is
shown in Figure 10, is important to the amylase as it may
Starch is a polymer of glucose linked through the C​1 affect its activity and stability. The domain C is folded into
oxygen in a “glycosidic bonds”. This bond is stable at high an antiparallel β -barrel and has no known function.
pH, but hydrolyzes at low pH. A latent aldehyde group may
be found at the end of this polymeric chain, and is called
the reducing end. In starch, two kinds of glucose polymers
are present: amylose, a linear polymer consisting of around
6000 glucose units, and amylopectin, which consists of
significantly less glucose units. It may be noted that
amylopectin is soluble in water, but amylose and the starch
itself is insoluble in cold water, both of whose structures are Figure 10​. Three Dimensional Structures of α -amylases [15]


shown in Figure 9. [13]
In these sites, the confirmed active sites of glycosyl
hydrolases are made of multiple binding sites, and formed
between domain A and B so domain B may participate in
substrate binding. They also contain many amino acid
residues which form hydrogen bonds to the substrate,
either directly or via water molecules. These substrate
binding sites are commonly aligned with aromatic residues,
making hydrophobic stacking interactions with the sugar
Figure 9​. Amylose and Amylopectin [14a]
​ rings. The glutamic acid residue is said to be the proton
donor, while the first conserved aspartic acid is the
Amylases are enzymes capable of digesting the nucleophile. Below is the reaction of α -amylase and starch.
glycosidic linkages of starch. In humans, they may be found [13]
​ There are two types
in both saliva and in the pancreas. [14]
of amylase: endoamylase and exoamylase. Both types are
capable of hydrolysing starch, and are classified by their
manner of attacking the glycosidic bond. Endoamylases
can cleave α ,1-4 glycosidic bonds found in the inner part of
both amylose and amylopectin chain. One popular example
of an endoamylase is α - amylase. Exo-amylases, on the
other hand, either exclusively cleave α , 1-4 glycosidic
bonds, or cleave both α ,1-4 and α , 1-6 glycosidic bonds.
Figure 11​. Reaction of α - amylase and starch​[16]
The β − amylase is a good example of the former

exo-amylase. [13] Unlike typical organic and inorganic catalysts, enzymes
have an unusual behavior with regards to substrate
As mentioned before, α -amylase is an endoamylase concentration, as illustrated in Figure 12.
that may cleave the α ,1-4 glycosidic bonds of the amylose
or amylopectin chain. The end products of this amylase are
oligosaccharides with varying lengths. This amylase is
often divided into two types, saccharifying α -amylase and
liquefying α -amylase, depending on the degree of
hydrolysis of the substrate. Saccharifying α -amylases
hydrolyze 50 to 60%, while liquefying α -amylases only

cleave about 30-40% of the linkages of starch. [13]

The α -amylase is a starch hydrolase composed of Figure 12. ​Effect of Substrate Concentration on the Initial
several amino acid sequences. [14]​ They are monomeric, Velocity of an Enzyme-Catalyzed Reaction
calcium-containing enzymes, with a single polypeptide Source:
chain folded into three domains. The most conserved https://www.khanacademy.org/science/biology/energy-and-enzym
domain consists of eight parallel β − strands that are folded es/enzyme-regulation/a/basics-of-enzyme-kinetics-graphs
in a symmetrical manner, and arranged in a barrel encircled
At low substrate concentrations, the rate of the reaction because HCl can hydrolyze the enzyme and break it apart,
increases with increasing substrate concentration. causing it to lose its function.
However, the rate increases less at relatively higher One factor that may affect enzyme activity is incubation
substrate concentrations, up to a certain point where the time, that generally follows a linear trend and is directly
rate becomes constant (V​max​). In 1913, Michaelis and proportional to enzyme activity. Enzyme activity is
Menten derived a mathematical equation to describe this reversible, and the formation of products occurs while little
hyperbolic plot by first proposing the enzyme action where to no products have formed. As the reaction continues, and
enzymes, E, and substrate molecules, S, bind to each other a significant amount of product has been formed, the rate
to form an ES complex, as shown in Figure 1. ​Initial rates of back reaction becomes more significant, and the rate of
are measured so that the concentration of the product, P, formation of product slows down. Should the incubation
and therefore the rate constant, k​-2​, are both negligible. By time be too great, the enzyme activity may be measured as
assuming this as well as the steady-state condition of the falsely low. Thus, as a general rule, incubation must be
ES complex, where its concentration is held constant, long enough for a moderate amount of product to form and
Equation 2 was derived.​[17] for error in timing to be insignificant, but not too long that

there is a noticeable levelling off of the curve. [19]
From Equation 2, it was determined that the Michaelis
constant, K​m​, is equal to the substrate concentration that Generally, enzyme activity increases over time. This is
yields an initial velocity that is half of V​max​. Another useful because the longer an enzyme is incubated with its
constant is the turnover number, defined as the amount of substrate, the more product is formed. However, this rate of
substrate that is transformed to products in a certain time formation of product is not always linear. Should the
period, as shown in Equation 5.​[18] substrate be used up during the incubation time, the
formation of product will decrease, regardless of
concentration of substrate.​[19]

Another factor that influences enzyme activity is


Equation 5. ​Turnover number, k​cat temperature. At low temperatures, the reaction rate
Source: increases with increasing temperature. However, enzyme
http://wajimypi12.dragon.ru.net/829234/615002/gynebuz_enzyme activity decreases when the temperature, which differs for
-turnover-number-example_ymapihocaz/xygob.asp
each enzyme, is high enough to denature the enzyme itself.
Taking the reciprocal of the Michaelis-Menten equation
Enzymes are also affected by pH and each has an
yields Equation 2, otherwise known as the Lineweaver-Burk
optimum pH at which they are most active, mostly
equation. V​max was calculated as the reciprocal of the
​ 24]
corresponding to the pH of their natural environment. [20,
y-intercept and the K​M as the product of the slope and V​max​.
Above or below the optimum pH, the reaction rate of the
Since Equation 2 yields a linear graph and the intercepts
reaction will more or less drop rapidly. This is due to
1/v​0 and -1/K​m​, the variables v​o and
​ K​m are
​ measured more
denaturation and ensuing inactivation caused by the effect
accurately compared to the hyperbolic Michaelis-Menten
of pH on the state of ionization of the functional groups of
graph. Generally, the variables K​m​, V​max​, and k​cat give
the enzymes and substrates resulting to an inefficacy of
information about enzyme activity. A high K​m requires
​ a
enzyme-substrate complex formation.​ [2, 20]
greater amount of substrate to saturate the enzyme, which
also means that the enzyme has a low affinity for the
The last factor that influences enzyme activity is
substrate. Hence, low enzyme activity is observed at
substrate concentration, which is directly proportional to
relatively low substrate concentrations. Moreover, a high K​m
enzyme activity. Theoretically, in the absence of enzymes,
also means that a greater substrate concentration is
the rate of reaction would increase linearly with substrate
required to reach V​max​, which means that at low substrate

concentration, as proven by the equation below. [22]
concentrations, maximal catalytic efficiency (V​max​) cannot
be achieved. On the other hand, a high k​cat value​ denotes
higher enzyme activity.​[19]

In order to determine the concentration of the starch left


uncatalyzed, iodine through I​2 in ​ KI was added. Iodine Equation 6​. Reaction Rate in the Absence of Enzyme​[22]
reacted with starch to form a blue-black complex without
being affected by the glucose present as product of the In the presence of enzymes, reaction rates are still
reaction. Since it is colorimetric, the absorbance of the directly proportional to substrate concentration. However,
solutions were measured at 620 nm using a UV-Visible there is now the limitation of the number of active sites said
Spectrophotometer and theoretically, as the enzyme enzyme has. At low enzyme concentrations (or high
activity increases, the less intense the color will be. Due to substrate concentrations), all active sites may be occupied
different factors and possible errors, there were deviations by substrates, and no increased amount of substrate
from the expected results. [20] In the following investigations concentration can increase the reaction rate any further.
for the four factors, HCl was added to stop enzyme activity Thus, it may be said that there is a maximum reaction rate ,
Vmax, when all the active sites of the enzyme are Inhibitors may also be introduced to the starch solution to
occupied. While substrate concentration may increase the further investigate the Lineweaver-Burk equation.
reaction rate, the presence of enzymes greatly speeds up
the reaction. However, as enzymes become saturated, the REFERENCES
reaction rate may level off. This maximum reaction rate is
dependent on the total enzyme concentration, E, and the [1] David Harvey, ‘The Equations of Enzyme Kinetics’,
catalytic constant of the enzyme, k​cat​, which is the Chemistry LibreTexts, 3 April 2016,
frequency ​at which an enzyme-substrate complex is https://chem.libretexts.org/Courses/University_of_Californi
converted to product. The velocity at which active sites can a_Davis/UCD_Chem_107B%3A_Physical_Chemistry_for_
become saturated, K, is also taken into account. Thus,
Life_Scientists/Chapters/3%3A_Enzyme_Kinetics/3.2%3A
according to the Michaelis-Menten equation (see equation

below): [22] _The_Equations_of_Enzyme_Kinetics

[2]​ Antonio Blanco and Gustavo Blanco, ​Enzymes. Medical


Biochemistry, (​ 28 April 2017), pages 153-174

Equation 7​. Michaelis-Menten Equation [22] http://sci-hub.tw/https://doi.org/10.1016/B978-0-12-803550-
4.00008-2
Thus, enzyme activity may be both increased and
inhibited by enzyme concentration, and increases as [3]​ Farhaana Surti, ‘Enzyme Kinetics’, TeachMe
substrate concentration increases. However, the reaction Physiology, 27 March 2018, accessed 8 October 2019
rate may reach a point wherein it no longer increases as https://teachmephysiology.com/basics/enzyme-activity/enz
the enzyme has reached its saturation point.​[23]
yme-kinetics/
It must be noted that in this experiment, the results for
[4] ‘Enzyme kinetics’, School 2007, accessed 8 October
substrate concentration versus incubation time is
influenced by at least two factors: the standard equation 2019
gotten in part A, and the incubation time of 5 minutes, https://www.cs.mcgill.ca/~rwest/wikispeedia/wpcd/wp/e/En
which may not have been accurately followed. Because of zyme_kinetics.htm
this, the data may be more prone to errors than the other
tested factors. [5] Larry Engelking, ​Textbook of Veterinary Physiological
Chemistry, T ​ hird Ed. (2015), pages 32-38
CONCLUSIONS http://sci-hub.tw/https://doi.org/10.1016/B978-0-12-391909-
Starch is a polymer of glucose, that may be cleaved or
0.50006-2
digested by α -amylase, producing one or two units of
glucose. The α -amylase is an enzyme that catalyzes the
[6] ‘Michaelis-Menten Kinetics and Briggs-Haldane
digestion of glucose, and is found in the saliva and
Kinetics’ accessed on 8 October 2019
pancreas of humans. There are several factors that may
affect the enzyme activity in various ways. Incubation time https://depts.washington.edu/wmatkins/kinetics/michaelis-
is directly proportional to enzyme activity up to a certain menten.html
time. There is a certain temperature that yields the highest [7] M. Pant, P. Sharma, T. Radha, R.S. Sangwan, and U.
enzyme activity, which is not too high that the enzyme may Roy, ‘​Nonlinear Optimization of Enzyme Kinetic
be denatured, but not too low that the enzyme may not Parameters’​, J​ ournal of Biological Sciences v​ ol. 8(8)
have enough energy to react. There is also an optimum pH (2008): ​1322-1327
which may yield the highest enzyme activity, which
generally corresponds to the pH of their natural https://scialert.net/fulltextmobile/?doi=jbs.2008.1322.1327
environment. Lastly, the enzyme activity may be affected
by substrate concentration, which is generally directly [8] Sagar Aryal, ‘Lineweaver-Burk Plot’, Microbe Notes, 30
proportional to one another, but is limited by the enzyme November 2018, accessed 8 October 2019
concentration. This relationship between enzyme and https://microbenotes.com/lineweaver-burk-plot/
substrate concentration may be depicted in the derivation
of the Michaelis-Menten equation called the [9] David Goodsell, ‘Alpha-amylase’, February 2006,
Lineweaver-Burk equation. accessed on 8 October 2019
http://pdb101.rcsb.org/motm/74
The researchers recommend immediately measuring
the absorbance of the samples after addition of I​2 in KI
[10]​ UK Essays, ‘ Starch Hydrolysis of Amylase’,
because the color of the complex fades quickly. The
variables to be studied must also be strictly followed. For November 2018, accessed 8 October 2019
example, an incubation time of 5 minutes must be strictly
followed because some enzymes react within seconds.
https://www.ukessays.com/essays/biology/starch-hydrolysi [19] ‘Enzyme Kinetics’, 6 October 2019,
s-of-amylase-biology-essay.php https://www.chem.purdue.edu/courses/chm333/Spring%20
2013/Lectures/Spring%202013%20Lecture%2015.pdf
[11] ‘Enzymes: Amylase Activity in Starch-degrading Soil
Isolates’, accessed 9 October 2019 [20] ‘Experiment 10 - Enzymes’, accessed 9 October 2019
https://msu.edu/course/lbs/159h/EnzymeActivity04.pdf https://laney.edu/cheli-fossum/wp-content/uploads/sites/21
0/2012/01/10-Enzymes.pdf
[12] Openstax Biology, ‘Enzymes and the Active site’, Khan
Academy, accessed 8 October 2019 [21] ‘Incubation Time’, 6 October 2019,
https://www.khanacademy.org/science/biology/energy-and- https://www.ucl.ac.uk/~ucbcdab/enzass/inctime.htm
enzymes/introduction-to-enzymes/a/enzymes-and-the-activ
e-site [22] ​M. Beals, L. Gross, S. Harrell, ‘Enzymes and the Rate
of Chemical Reaction’, 6 October 2019,
[13] Amira El-Fallal, Mohammed Abou Dobara, Ahmed http://www.tiem.utk.edu/~gross/bioed/webmodules/enzyme
El-Sayed and Noha Omar, Starch and Microbial s.htm
α-Amylases: From Concepts to Biotechnological
Applications, Intechopen, 21 November 2012, [23] ​Matthew Mesias, Janelle Defiesta, ‘​Enzyme Assays’,
https://www.intechopen.com/books/carbohydrates-compre Chemistry Libretexts, 6 June 2019,
hensive-studies-on-glycobiology-and-glycotechnology/starc https://chem.libretexts.org/Bookshelves/Biological_Chemist
h-and-microbial-amylases-from-concepts-to-biotechnologic ry/Supplemental_Modules_(Biological_Chemistry)/Enzyme
al-applications s/Enzymatic_Kinetics/Enzyme_Assays

[14] Dongyou Liu, Aeromonas, Molecular Medical [24] ‘Introduction to Enzymes’, Manual of Clinical Enzyme
Microbiology, 2015, Measurements (1972), accessed 9 October 2019
https://www.sciencedirect.com/topics/biochemistry-genetic http://www.worthington-biochem.com/introBiochem/Enzym
s-and-molecular-biology/alpha-amylase es.pdf

[14a] Muhammed Lamin Sanyang, Ilyas RA, SM Sapuan, [25] ‘Results - Drug Delivery’, iGEM Freiburg Nanocillus, 6
Ridhwan Jumaidin, ​6 Starch amylose and amylopectin October 2019, ​http://2016.igem.org/Team:Freiburg/Delivery
structure, Research Gate, January 2018,
https://www.researchgate.net/figure/Starch-amylose-and-a [26] ‘Michaelis-Menten Equation Calculator’, Calistry, 6
mylopectin-structure_fig6_32122677 October 2019,
https://calistry.org/calculate/michaelis-menten-Equation
[15]​ Daniel Mihálik, Introduction of a synthetic
Thermococcus -derived α-amylase gene into barley [27] ‘Enzyme Turnover Example,’ 6 October 2019,
genome for increased enzyme thermostability in grains, http://wajimypi12.dragon.ru.net/829234/615002/gynebuz_e
Electronic Journal of Biotechnology, August 2017, nzyme-turnover-number-example_ymapihocaz/xygob.asp
https://www.researchgate.net/figure/Three-dimensional-str
[28] ‘Biomolecules: Enzymes,’ Chem Pages Netorials, 7
uctures-of-a-amylases-Protein-structures-were-predicted-u
October 2019,
sing-Phyre_fig1_319133552
https://www.chem.wisc.edu/deptfiles/genchem/netorial/mod
[16] Enzyme Kinetics (Activity), Biology OER, 6 October ules/biomolecules/modules/enzymes/enzyme4.htm
2019,
CERTIFICATION OF CONTRIBUTION
https://openlab.citytech.cuny.edu/bio-oer/quantitative-deter
I hereby certify that I have given substantial contribution
mination/enzymes/enzyme-kinetics-activity/
to this report:

[17] Basics of Enzyme Kinetics Graphs, Khan Academy, 6 _________________________


October 2019, Jasmin S. Cecilia
https://www.khanacademy.org/science/biology/energy-and-
enzymes/enzyme-regulation/a/basics-of-enzyme-kinetics-g _________________________
raphs Janelle Mae A. Chan

[18] Rodney Boyer. Concepts in Biochemistry, 3rd ed. _________________________


Shannen Louise T. So

You might also like