Professional Documents
Culture Documents
Lecture contents
I. Introduction
II. Major groups of medically important fungi: Yeast
III.Major groups of medically important fungi: Mold
IV.Clinical classification of Mycoses
V. Laboratory diagnosis of fungal infections
Medically Important Fungi
Learning objective :
Define the terms ‛yeast’, ‛mold’ and ‛dimorphic fungi’.
Outline the main features of some clinically significant fungal infections:
•Tinea
•Candidiasis
•Endemic mycoses: Sporotrichosis
•Cryptococosis
List the major groups of medically important fungi
•Superficial mycoses
•Cutaneous mycoses
•Sub-cutaneous mycoses
•Systemic mycoses
Outline the main features of opportunistic mycoses and their clinical consequences
YEASTS FUNGI DIMORPHIC FUNGI
Candida Moulds at 25-30oC
Cryptococcus Yeasts at 35-37oC
Trichosporon Sporothrix schenckii
MOLDS
Geotrichum Histoplasma capsulatum
Malassezia Blastomyces dermatitidis
Rhodotorula Paracoccidioides brasiliensis
Saccharomyces Penicillium marneffei
● Fungal entry
● rare in immunocompetent hosts
● accidental penetration of host barriers
● immunologic defects
● debilitating conditions
Fungal pathogenesis
Source of Clinical Mechanism of entry
fungus classification
Endogenous Opportunistic Iatrogenic (indwelling lines,
catheters, etc.)
Cutaneous Trauma
Subcutaneous Trauma
Systemic Inhalation
Microscopic examination of
yeasts :
Gram-stain:
Candida species: yeast-like, 4-8 ųm, budding, psedomycedium present or absent
Cryptococcus species: yeast-like, budding, no pseudomycelium.
Malassezia species: budding yeast cells present, predominantly oval form and some
spherical cells.
* Lipophilic yeast, growth must be stimulated by overlaying the Sabouraud's Dextrose agar (SDA) with olive oil.
Candida species
• Characterized by globose to elongate yeast-like cells or blastoconidia that reproduce by multilateral
budding.
Hyaline Hyphomycetes
Dematiaceous Hyphomycetes
Uncultural fungi
•Conidia hyaline or pigmented, one-celled, smooth- or rough-walled forming long divergent chains (radiate) or
aggregated in compact columns (columnar).
•Conidial head is formed by the vesicle, phialides, metulae (if present) and conidia.
Aspergillus species
Aspergillus fumigatus
•Colonies grow rapidly, initially white, becoming blue-green in color with characteristic
terminally branched radial folds at the periphery of the colony.
•Colonies grow rapidly, velvety in texture, initially white becoming granular and greenish
yellow.
•Consists of 3 genera which can be differentiated by the microscopic morphology of the micro and/or
macroconidia.
•Also known as keratinophilic fungi because they are able to grow on keratin such as hair,
nail and skin.
•In human, the disease caused by these fungi is generally known as ringworm or tinea
•This group of fungi has never been reported as opportunistic pathogens.
•Can be antrophilic (human host), zoophilic (animal host) and geophilic (soils).
1. Epidermophyton species
Macroconidia numerous, smooth thin-walled, club-shape with blunt tip, no microconidia.
2. Microsporum species
•Macroconidia present solitary or in clusters alongside the septated hyphae, rough walls or
spindle-shaped. Microconidia absent or rare.
3. Trichophyton species
1. Histoplasma capsulatum
• Hyphae hyaline, septate with short conidiophores bearing a characteristic large, rounded, tuberculated
macroconidia.
• Microconidia small, round on short conidiophores branched directly from the sides of the hyphae.
• Thermo-dimorphism can be demonstrate by inoculating the fungus on enriched medium e.g brain heart
infusion blood agar incubated at 37º C with the production of white and smooth yeast-like colonies.
• Histoplasma isolates that show no thermal dimorphism is Sepedonium species.
Penicillium marneffei / Talaromyces marneffei
• At room temperature (25ºC) , colonies grow moderately rapid, velvety with raised centre,
producing a distinctive pink pigment diffused into the medium.
• Hyphae septate, penicilli biverticillate with long smooth conidiophores.
• At 37◦C on enriched medium, colonies yeast-like, small, rough and white in color.
• Gram-stain shows ellipsoidal to spherical yeast-like cells and long pseudomycelium.
A B
C D
Dimorphic Fungi_3
Sporothrix schenckii
• At room temperature (25ºC), colonies slow growing, surface folded and wrinkled, light
grey to black.
• Conidiophores erect, short and thin, usually single arise from the septated hyphae.
• Conidia in clusters or single with tiny denticles proliferate at the apex of the conidiophores.
• On blood agar incubated at 37ºC, colonies are yeast-like, punctuated centre, white in color.
• On gram-stained, consisting of spherical or oval budding yeast cells with pseudohyphae.
B
A
D
C
Zygomycetes_1
• Colonies grow rapidly, cottony, white to light grey in color.
• Hyphae hyaline, broad and nonseptated.
• Asexual reproductions include long simple or branched sporangiophores bearing a
sporangium containing sporangiospores.
• Dome-like columellae is present at the apex of sporangiophre in some species.
• Stolons bearing rhizoids may be presented.
• The identification of the genus is based on the morphology and characteristics of asexual spores
and the presence or absence of rhizoids.
• Spcies frequently isolated from clinical specimens in the laboratory include:
Mucor, Rhizopus, Basidiobolus, Cunninghamella, Syncephalestrum
Mucor
• Colonies grow rapidly, cottony, initially white becoming dark grey.
• Hyphae hyaline, broad and non-septated.
• Sporangiophores long, erect, simple or branched bearing globose to spherical
sporangium at the terminal, columellae well developed but no apophyses.
• Stolons and rhizoids are absent.
Zygomycetes_2
Rhizopus species
• Colonies fast growing, initially white cottony becoming brownish grey to blackish- grey
due to abundant sporangium.
• Hyphae broad, hyaline, non-septated with stolons producing groups of
sporangiophores and rhizoids.
• Sporangiophres arising from the opposite of rhizoids and stolons at the nodal
region.
• Sporangiophores smooth walled, simple, unbranched and long bearing globose
sporangium, columella and apophysis are present the apices of sporangiphores.
• Sporangiospores subglobose to ellipsoidal, after releasing the spores, the
sporangium collapsed leaving an umbrella-like structure.
Dematiaceous Hyphomycetes
Curvularia lunata
Cladosporium species
Hortaea werneckii
• Colonies grow rapidly, olivaceous black both front and the reverse.
• Exhibit both a yeastlike and hyphal morphology.
• Yeast cells with thick septum, the budding may be polar, bipolar or lateral.
• On Gomori methanamine silver nitrate stain (GMS), surface of some of the
yeast cells is marked by conspicuous rings or collarette intercalary or
laterally.
• Halophilic black yeast grows abundantly in 10% Nacl incubated at room
temperature.
Uncultural fungi
Skin mycology
Superficial mycoses
Cutaneous mycoses
Subcutaneous mycoses
• Endogenous
Source: man or animal
Transmission: direct or indirect formites
In general: no strict geographical delimitation
Occupation: no importance with respect to infection.
No seasonal incidence
No dimorphism
• Exogenous
Source: soil or decaying vegetation
Non contagious – non epidemic
Infection may or may not lead to disease
Strict geographical delimitation may occur.
Occupation may be of importance
Seasonal variation may occur
Dimorphism prominent
Fungi: two forms: 1. Yeast or Yeast like
2. Filamentous–mold.
Fungal Infections
1) Superficial mycoses
Pityriasis versicolor, tinea nigra, black & white piedra
2) Cutaneous mycoses
Dermatophytosis, cutaneous candidosis
3) Subcutaneous mycoses
Sporotrichosis, chromoblastomycosis, phaeohyphomycosis,
eumycetoma, basidiobolomycosis, conidiobolomycosis,
lobomycosis
4) Predominantly endemic deep organ mycoses
Histoplasmosis, coccidioidomycosis, blastomycosis,
paracoccidioidomycosis, penicillosis
5) Systemic mycoses with worldwide distribution
Candidosis (candidiasis), cryptococcosis, aspergillosis,
zygomycosis, fusariosis, scedosporiosis, pneumocystosis
A. Superficial mycoses
• involving the most superficial layers of the epidermis or the hair shaft
• portal of entry: skin
Types of dermatomycoses
• Ringworm has different clinical manifestations in different areas of the body. Inflammation
is often greatest at the advancing margin, leaving a central area with some clearing.
Division of the disease into anatomical areas.
Tinea Capitis
• Infection of the groin is more common in men, involving the perineum, scrotum, perianal
area and in other intertriginous areas, such as under pendulous breasts, in the axilla, and
around the umbilicus of obese patients.
Cutaneous candidiasis
• cutaneous candidiasis: diaper rash in infants, intertrigo of the scrotum and
perineum
• oropharyngeal candidiasis: sign of HIV infection
• vulvovaginal: common among sexually active women.
• onychomycosis .
• aetiological agents: C albicans etc
Onychomycosis
Sporotrichosis:
• worldwide in distribution
• a chronic infection usually limited to the cutaneous and subcutaneous tissue
• characterised by an localized erythematous, ulcerated, or verrucous nodule, relatively painless.
• No systemic symptoms are present.
• may subsequent spread along lymphangitic channels.
• other sporotrichosis: pulmonary, osteoarticular
• etiology: Sporothrix schenckii , dimorphic fungi
Chromomycosis (Chromoblastomycosis)
Phaeohyphomycosis
Endogenous
Candidiasis
Malassezia furfur
Opportunistic mycoses
Risk factors: chronic diseases, steroid therapy, AIDS
Mycology Unit
Fungus
Urease test
- Negative
- Remain yellow *Gram stain
- Positive
Biochemical tests
• Carbohydrate assimilation test can be performed using laboratory own preparation or
commercial API 20 C AUX system.
• The API system consists of 20 cupules containing dehydrated substrates which enable the
performance of 19 assimilation tests.
• The cupules are inoculated with a semi-solid minimal medium and the yeasts will only grow in
cupules if they are capable of utilizing each substrate as the sole carbon source.
• The reactions are read by comparing them to the controls and identification is obtained by referring
to the Analytical Profile Index or using identification software.
Importantindentistry:
OralCandidiasis
• Also known as moniliasis or
thrush or candidosis
• Secondary candidiasis
– Manifestation of Systematic mucocutaneous candidiasis – thymic aplasia
and candida endocrinopathy syndrome
Predisposing Factor
• Change in oral microbial flora
– Administration of antibiotics specially broad
spectrum
– Xerostomia secondary to anticholinergic agents
– Salivary gland disease
• Local Irritation
– Denture, orthodontic appliance
– Heavy smoking
Predisposing Factor
• Drug therapy
– Corticosteroid or cyto-toxic
drug or immunosuppressive
drug
– Radiation therapy
• Other systemic disease
– Leukemia
– Lymphoma
– Diabetes
– Tuberculosis
– Epithelial dysplesia
Predisposing Factor
• Malnutrition status
– Low serum vit A
– Pyridoxine
– Iron level
• Age
• Infancy
– Pregnancy
– Old age
Predisposing Factor
• Endocrine deficiency
– Hypoparathyroidism
– Hypothyroidism
– Addison’s disease
• Others
– Tight fitting garments
– Indwelling catheter
Pseudomembranous candidiasis
• Thrush
• Topically or systematic
• 7 days treatment
• Oral symptoms disappears in 2-5 days
• Relapse common – underlying immunodeficiency
• Removal of causative factors
– Ill fitting denture
– Withdrawal or change of antibiotics
– Proper cleaning of denture and use of antifungal agent
Topical treatment
• Nystatin
– 250 mg tds – 2 week
followed by 1 troche per
day for 3rd week
• Ketaconazole
– 200 mg tab with food, OD
– Liver side effect – so
continous monitoring
needed in long term dose.
– Acidic environment for
absorption
Systemic Treatment
• Itraconazole
– 100/200 mg capsule –
b.d. for 2 week
• Fluconazole
– 100 mg – o.d. for 2
week
– Effective prophylactic
agent
Identification of Cryptococcus sp
Cryptococcal Ag
Lateral Flow Assay
-
Immunochromatograp
hic assay
- Detect capsular
polysaccharide Ag
L-Canavanineglycine
bromothymol blue (CGB)
Urease test
- Positive
- Color change from
yellow to pink
*Germ tube test –
Negative
Cryptococcal Ag Lateral Flow Assay
Identification of mold
Slide culture Tease mount
Parker’s ink
-Use potato dextrose -Used for matured
with KOH
agar as a sporulation fungal culture grown
- For nail
media on the SDA medium
clipping, hair,
-Lactophenol cotton
skin samples
blue (LCB) stain
Mold on SDA
• Blood culture
• Sabouraud’s dextrose agar (SDA) slide culture technique
• Identification of the isolates based on cultural characteristics
Laboratory diagnosis of fungal infections
• Presumptive identification
of candida albicans and C.
dubliensis
• Reynaulds-braude
phenomenon
• 5%-C.albicans negative, false
positives
• Additional tests
• Human/sheep serum,
incubated 2 hrs
• Long tube like process
5. Histopathology
• especially for Aspergillus, Candida, Penicillium marneffei,
zygomycosis, Cryptococosis
FUNGAL STAINS
DIFFERENTIAL STAINS
●WET PREPARATIONS
• Grams stain
• H and E stain
• KOH mount • Giemsa
• *India ink stain • PAS
• Nigrosin stain • Gomori’s methamine stain
• Calcoflour white stain • Acridine orange stain
• Lactophenol Cotton blue
• Fluorescent antibody staining
• Neutral RED stain
• India ink stain
INDIA INK STAIN
(Negative stain)
Polysaccharide capsule
repels opaque
medium India ink 150 ml Distinct halo
Merthiolate 3ml
Tween 80 0.1 ml As it is a negative stain
Nigrosin
granules 10g
Formalin 100ml
FUNGAL CULTURE
• Basal Media
• Nutritional deficient media
• Enriched and selective media
• Differential agar media
• Media for stimulation of Ascospores
• Media used for biochemical tests
Basal Media
SABOURAUD DEXTROSE AGAR /SGA Peptone 10g
Dextrose 40g
pH -5.6 Agar 20g
Distilled water 1000ml
Commonly used
Primary isolation
SDA+ANTIBIOTICS SDA+
Cycloheximide 500mg
Chloramphenicol 50mg
Gentamicin 20mg
ASPERGILLOSIS-,dryPowdery colonies
Nutritional deficient media
CORN MEAL AGAR/CORN Corn meal 8g/zein 40g/100ml
MEAL TWEEN AGAR Tween80 2g
Agar 4g
Distilled water 200ml
Large,highly refractile,thick walled
Enriched and selective media
OBA
➢ Which one of the following statements is true regarding
cryptococcosis :
A. Pneumonia is the most frequently encountered clinical
manifestation of cryptococcosis in HIV-infected patients
B. The most common Cryptococcus species causing human infections is
Cryptococcus gattii
C. The causative agent produces germ tubes (germ tube positive)
D. Latex agglutination test can be used to detect cryptococcal antigen
in both serum and cerebrospinal fluid (CSF)
E. Human to human transmission can occur
F. It occurs mainly in patients with reduced humoral immunity
SAQ
❖ A 55-year-old lady with a history of tuberculosis 3 years prior,
underwent a bone marrow transplant 3 months ago and now
develops fever, cough, chest pain and shortness of breath. An
organism was seen on her lung biopsy specimen, as shown in
the picture. Her chest x-ray is also shown.
➢ What is the mode of transmission of the causative agent of
this infection?
● The most likely infection is aspergillosis and the
causative agent is Aspergillus species.
● Transmission is via inhalation of airborne conidia
Tissue from lung biopsy stained
OBA with Gomori methenamine silver
➢ The following statements regarding aspergillosis and showing V-shaped
Aspergillus species are true EXCEPT for: (dichotomously) branched (acute
A. Aspergillus species are ubiquitous in nature angle 45° branching), narrow
B. Most invasive infections are caused by members of the septate hyphae with parallel walls
Aspergillus fumigatus species complex.
C. It can produce aspergilloma (fungus ball) within cavities in
the lung
D. Aspergillus species is a rapidly growing fungus in the
laboratory and is often visible in culture within 1-3 days of
incubation.
E. Detection of galactomannan and beta-D-glucan can be used
to diagnose invasive aspergillosis
F. Growth of Aspergillus species in culture always indicates an
infection Aspergilloma or fungus ball in the
upper lobe of the right lung.
ASPERGILLOSIS
● The term "aspergillosis" refers to illness due to allergy, airway or
Pneumocystis jirovecii
➢ What is the recommended laboratory diagnostic Pneumocystis jirovecii cysts on immunofluorescent
staining:
method for diagnosis of this infection? apple-green fluorescence observed
Talaromyces marneffei (mold form) seen on lactophenol cotton blue (LPCB) stain
- hyaline septate hyphae producing typical brush-like clusters of conidia chains
at the tips of the phialides
SAQ
❖ A 65-year-old diabetic female patient is brought to A&E
with fever, headache, sudden swelling on the right side of
the face and bleeding from the right nostril. The facial
lesion eventually becomes necrotic, as shown in the
picture. Histopathologic examination of a tissue biopsy
taken from the facial lesion as well as the organism
isolated in culture are shown in the pictures. This patient
eventually died 2 days later.
➢ What is the diagnosis?
Zygomycosis (mucormycosis) - rhinocerebral Microscopic examination of
mucormycosis tissue biopsy showing broad/wid
➢ Name 3 types of fungi (to the genus level) that most nonseptate hyphae
commonly cause this infection
Mucor, Rhizopus and Rhizomucor
➢ Which Phylum, Class and Order do these 3 genera of
fungi belong to?
Phylum Glomerulomycota
Class Phycomycetes
Order Mucorales Rhizopus on SDA – cotton candy colonies
TRUE/FALSE STATEMENTS
● Kuru ● Scrapie
Oral infectivity
Pot ent ial area of
Saliva is a risk factor??
cross
Tonsils, posterior border
contamination
of tongue, trigeminal
Resist ant t o ganglion are potential
sterilization sources
Bone graft s Gingiva has its highest
Surgical handling of presence
risk group
Transmissible Spongiform
Encephalopathies
Sporadic/ Classical Kuru
CJD: Acquired
Congenital, 85% of cases Cannibalistic activity
Effects middle aged or elderly Women and young adults
Characterized by
- Rapidly progressive
are effected
multifocal dementia Long incubation period
- Ataxia, myoclonus
- Evident EEG changes
- Speech loss and finally death
Transmissible Spongiform
Encephalopathies
Iatrogenic TSE
Special interest to Dentist.
Risk of cross infection from instruments
Most of infections occurred after
- Neurosurgery
- Duramater transplant
- Corneal grafting, growth hormone, xenogenic grafts, tonsillar
surgery
- Manipulation of post 1/3 of tongue
Transmissible Spongiform
Encephalopathies
tfCJD
Effects adolescents and young adults
Associat ed wit h int ake of infect ed animal
products
Long course of illness
Hallucinat ions, dysphagia, dysart hria,
paraesthesia,
Delirium, dementia and akinesia
Ameloid deposit ion in lymphat ic t issue
Absence of EEG changes
Oral manifestat ions of prion
diseases
Most common manifestations:
- Dysphagia (may be initial symptom)
- Dysarthria
- Motor incoordinations
1960s
Scientists
experimentally transmit
Kuru and CJD to
chimpanzees,
demonstrating the
transmissible nature of
these diseases.
1980s
60 people die from
CJD after being
infected by
contaminated
surgical
instruments.
85 people die after
receiving prion-
infected growth
hormone injections.
Overview of Prions disease
Kuru (human)
Struck members of the Fore tribe in the
1950s and 1960s
Muscle weakness, loss of coordination,
tremors, inappropriate episodes of laughter
or crying
Transmitted by ritual cannibalism as part
of funeral ceremonies
DiagnosisDiagnosis
can be made by:
1. Clinical signs and Symptoms.
2. Detection of Scrapie
Associated fibrils.
3. Detection of Abnormal Prion
protein (PrPsc) by Western blotting.
General infect ion cont rol pract ices are sufficient if the work
does not involve neurovascular tissue