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Article in World Journal of Microbiology and Biotechnology (Formerly MIRCEN Journal of Applied Microbiology and Biotechnology) · May 2014
DOI: 10.1007/s11274-014-1662-8 · Source: PubMed
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ORIGINAL PAPER
Abstract Plant growth promoting bacteria and nitrogen- microscopy to verify their suitable morphology. Results
fixing bacteria (NFB) used for crop inoculation have showed the association between lupin nodules of diverse
important biotechnological potential as a sustainable fertil- known NFB and nodule-forming bacteria belonging to Al-
ization tool. However, the main limitation of this technology phaproteobacteria, Betaproteobacteria, Gammaproteobac-
is the low inoculum survival rate under field conditions. teria and Bacteroidetes. In microencapsulation assays, the
Microencapsulation of bacterial cells in polymer matrices 1:14 ratio of sodium alginate:maltodextrin (15 % solids)
provides a controlled release and greater protection against showed the highest cell survival rate (79 %), with a micro-
environmental conditions. In this context, the aim of this capsule yield of 27 % and spherical microcapsules of
study was to isolate and characterize putative NFB associ- 5–50 lm in diameter. In conclusion, diverse putative NFB
ated with lupin nodules and to evaluate their microencap- genera and nodule-forming bacteria are associated with the
sulation by spray drying. For this purpose, 21 putative NFB nodules of lupine plants grown in soils in southern Chile, and
were isolated from lupin nodules and characterized (16S their microencapsulation by spray drying using sodium
rRNA genes). Microencapsulation of bacterial cells by spray alginate:maltodextrin represents a scalable process to gen-
drying was studied using a mixture of sodium algi- erate a biofertilizer as an alternative to traditional nitrogen
nate:maltodextrin at different ratios (0:15, 1:14, 2:13) and fertilization.
concentrations (15 and 30 % solids) as the wall material.
The microcapsules were observed under scanning electron Keywords Polymer Sodium alginate Maltodextrin
Enterobacter Diazotrophic bacteria
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World J Microbiol Biotechnol
consequences in lupin crops from agro-ecosystems. In this 72°240 5700 W) from the Instituto de Investigación Agraria
context, nitrogen-fixing bacteria (NFB) have been sug- (INIA), Region of La Araucanı́a, Chile. Lupin nodules were
gested as an attractive alternative to reduce the application surface sterilized (70 % ethanol for 30 s followed by 4 %
of N-based fertilizers on soils by farmers, with the con- sodium hypochlorite for 60 s) and aseptically processed
comitant environmental and economic benefits. NFB can according to Langer et al. (2008). Appropriated dilutions
be found associated with roots (diazotrophic bacteria), were then sampled onto yeast-extract mannitol agar (YMA;
within of plant tissues (endophytic bacteria, EB) and 0.2 g L-1 magnesium sulfate, 1.0 g L-1 mannitol,
forming structures (nodules) in roots which play an 0.5 g L-1 potassium phosphate dibasic, 0.1 g L-1 sodium
essential role in the acquisition of N from atmosphere in chloride, 0.4 g L-1 yeast extract; 1.5 % agar), supple-
legume plants (Martı́nez-Viveros et al. 2010). Currently, mented with 0.25 % Congo red dye. YMA is a universal
biofertilizers based on NFB are widely investigated and culture medium used for isolation of NFB associated with
commercialized as alternative to traditional chemical fer- legume nodules. The YMA plates were incubated at 30 °C
tilization. However, the survival and activity of bacteria for 6 days and colonies showing a slightly raised, colorless
used for plant inoculation is reduced rapidly due to con- and opaque phenotype were selected. Colorless phenotypes
currence with autochthonous soil bacteria and/or inade- was taken as an indicator that Congo red had not been
quacy of soil characteristics (acidity, osmotic potential, absorbed by bacterial cells, which is a characteristic of NFB.
nutrient availability, etc.) (Martı́nez-Viveros et al. 2010).
Microencapsulation of EB and NFB in a polymer matrix Characterization of putative nitrogen-fixing bacteria
offer them protection and gradual release into the soil,
ensuring a higher prevalence of beneficial bacteria under Phenotype
environmental conditions. Beneficial bacterial cells have
been encapsulated by several chemical and physical tech- Twenty-one representative colonies of putative NFB were
niques using principally alginate, starch, skim milk and agar selected, re-streaked onto YMA and pure cultures were
as polymer matrices (Schoebitz et al. 2013). Spray drying stored at -80 °C in Luria–Bertani (LB; 10 g L-1 tryptone,
represents a fast and economic process widely used in the 5 g L-1 yeast extract, and 10 g L-1 NaCl) broth supple-
large-scale production of biofertilizers (Schoebitz et al. mented with glycerol (30 %). The isolated bacteria were
2013). However, despite the great potential of this technol- observed under light microscopy and a Gram test was
ogy in agriculture, the application of microencapsulated EB carried out according to Hucker’s staining method (Murray
and NFB to improve crops yields is scarce, particularly in et al. 1994). The non-staining KOH method (Buck 1982)
lupin plants where so far has not been explored. Ash-derived was performed as confirmative gram assays.
volcanic soils of south Chile (Andisols) present low P
available, acidity (pH \ 5.5) and occurrence of phytotoxic Ribotype
cations (Al3? and Mn2?) in soil solution, which may impair
growth of unadapted bacteria. For this raison we decided to Genetic characterization to genus level of each isolated
work with native or naturalized bacteria and expect these to strain was performed by partial sequencing of the 16S
be well adapted to the soil conditions of south Chile. In this rRNA gene. Briefly, total DNA was extracted by using
context, the purpose of this study was to isolate and char- Gentra Puregene Yeast/Bact. Kit (Qiagen, Inc., USA)
acterize putative NFB from lupin plants grown in southern according to the manufacturer’s instructions. Fragments of
Chile and to evaluate spray drying for bacterial cell micro- 16S rRNA gene were amplified by polymerase chain
encapsulation. Isolates were genetically characterized based reaction (PCR) using the bacterial universal primer set: 27f
on partial 16S rRNA gene sequences. One of the bacteria (50 -AGA GTT TGA TCC TGG CTC AG-30 ) and 1492r (50 -
strain was used to evaluate the bacterial microencapsulation TAC GGY TAC CTT GTT ACG ACT T-30 ) (Pearce et al.
by spray-drying using different mixture of alginate/malto- 2004). The PCR mixture [0.125 lL GoTaqÒ Flexi DNA
dextrin as polymer matrices. polymerase (Promega, Inc., USA), 20 pmol of each primer,
3 lL MgCl2 25 mM, 2.5 lL of 2 mM deoxyribonucleotide
triphosphate and 5 lL Green GoTaqÒ Flexi Buffer 59]
Materials and methods was made up to 50 lL with DNA-free water. Amplification
was performed as follows: hot-start at 94 °C for 5 min
Sampling and isolation of putative nitrogen-fixing followed by 35 cycles of denaturation at 94 °C for 1 min,
bacteria annealing at 52 °C for 1 min, and extension at 72 °C for
2 min. The 16S rRNA fragments were purified and
Roots containing nodules were collected from L. luteus sequenced using Macrogen (Seoul, Korea). The sequences
grown at the Carillanca Experimental Station (38°410 4000 S; obtained were analyzed by BLAST algorithm and
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World J Microbiol Biotechnol
compared with those deposited in the GenBank database. mixtures were fed into the main chamber through a peri-
The phylogenetic affiliation, based on the 16S rRNA genes, staltic pump. An air input temperature of 100 °C and an
of isolated NFB in relation to representative bacteria outlet temperature of 65 °C were used, with a drying air
deposited in GenBank was performed using MEGA5 flow of 73 m3 h-1 and a feed rate of 5.3 g min-1.
(http://www.megasoftware.net/). The product yield (Y) of the spray-drying process was
estimated according to O’Riordan et al. (2001):
Y(%) = (Wm 9 100)/Wp, where Wm is the weight of the
Bacterial growth rate
recovered microcapsules (g) and Wp corresponds to the dry
weight of the polymer dispersion (g) in addition to the dry
The bacterial growth rate for each isolated strain was
weight of the bacterial suspension (g). In addition, the
studied by plotting the cell growth (absorbance at 600 nm)
moisture content of the microcapsules was measured
versus the incubation time. For this purpose, strains were
gravimetrically. Briefly, 0.5 g of microcapsule was
inoculated in 250 mL Erlenmeyer flasks containing 50 mL
weighed, then dried at 105 ± 1 °C for 24 h, cooled in a
of yeast mannitol broth (YM) and incubated for 72 h at
desiccator, and weighed a final time. The initial and final
30 °C with shaking (150 rpm). After incubation, 1 mL of
weights were used to calculate the wet basis moisture
each culture was transferred to tubes containing 9 mL of
content. The experiments were carried out in triplicate.
YM medium (in triplicate). The tubes were incubated at
30 °C with shaking (150 rpm) and the optical density
(600 nm) was recorded every 1 h for 12 h. Survival of microencapsulated bacterial cells
The growth rate was estimated as: Ln(A/A0) = -k 9 t,
where A0 is the absorbance value of bacterial culture at Enumeration of the free and microencapsulated Entero-
time zero, A is the absorbance value of bacterial culture at bacter sp. 14 cells was determined by the spread plate
time t and k is the growth rate constant. method. One gram of microcapsule was dissolved in 9 mL
of sterile saline phosphate buffer and incubated at 30 °C
for 24 h with shaking (150 rpm). Serial dilutions (10-1–
Microencapsulation and survival 10-7) of free cells or microencapsulated cells were made in
sterile saline solution (NaCl 0.85 %) and then 0.1 mL of
Bacterial cell microencapsulation each dilution was spread onto YMA plates. Colony form-
ing units (CFU) were enumerated after incubation at 30 °C
An isolated bacterium, characterized as Enterobacter sp. for 48 h. The percentage of survival (S) with respect to
14, was chosen as the model for microencapsulation initial counts before drying was calculated according to
because it exhibited a high growth rate and presented Rajam et al. (2012): S = (N/N0) 9 100, where N is the log
characteristic phenotypic colony facilitating its count and cell number of bacteria per g after drying and N0 is the log
monitoring by plate-counting method. cell number of bacteria per g before drying.
Microencapsulation of Enterobacter sp. 14 cells with
sodium alginate and maltodextrin as wall material was
evaluated. Sodium alginate and maltodextrin were mixed at Morphology of microcapsules
different ratios (0:15, 1:14, 2:13) and concentrations (15
and 30 % solids) (Table 1). In a 250 mL beaker, sodium The microcapsule morphology was visualized by scanning
alginate was dissolved in 50 mL of distilled water at 50 °C electronic microscopy (SEM).
under continuous agitation. Maltodextrin was added and The dried powders of microcapsules were fixed on
mixed until a homogeneous solution was obtained. The aluminum studs and coated with carbon (double sided
solution was cooled to 20 °C and mixed with 30 mL of the carbon tape) and then metalized with pure gold using an
bacterial suspension (106 UFC mL-1). Finally, distilled Edward S150 Sputter Coater, and observed in a scanning
water was added to get a final volume of 100 mL, and electronic microscope (model JSM-6380LV; JEOL Ltd.,
homogenized at 18,000 rpm for 2 min with a benchtop Japan) at 10 kv voltage.
homogenizer (model 400DS; PRO Scientific Inc., USA).
The viscosity of polymer mixture was measured with a Statistical analysis
double cylinder digital high speed viscometer (model VIS-
79 series; MRC, Israel) with different spindles depending Results of this study were subjected to ANOVA followed
on the intermediate (spindle F) or low (spindle E) viscosity. by Duncan’s test of multiple comparisons. Significance
The spray-drying process was carried out with a LabPlant was determined at 5 % confidence level. All the results
SD-05 dryer (UK), containing a 1.5 mm nozzle diameter were presented as average value ± standard deviation of
and a spray chamber of 500 mm 9 215 mm. Polymer three replicates.
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Table 1 Phylogenetic assignment of selected putative nitrogen-fixing bacteria associated with lupin nodules
Isolates Taxonomic groupa Closest relatives or cloned sequences Similarityb (%) Accession no.
(accession no.)
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Results and discussion between 0.13 and 0.26 k h-1). Although no significant
(p B 0.05) differences were observed in bacterial growth
Characterization and growth rate of putative nitrogen- rates among Enterobacter sp. 5, Ochrobactrum sp. 11 and
fixing bacteria Enterobacter sp. 14, based on ANOVA followed by Dun-
can’s test of multiple comparisons, Enterobacter sp. 14 was
All isolate strains were rod-shaped cells, motile and gram selected as the bacterial model for the subsequent micro-
negative as revealed by light microscopy and Gram tests. encapsulation by spray drying due to its characteristic
Respect to the ribotype, the genetic analyses of the 16S rRNA phenotype colony. Also, Enterobacter strains are com-
gene sequences revealed a high similarity with known diazo- monly found in rhizosphere soils and legume nodules, and
trophic bacteria and NFB belonging to Alphaproteobacteria studies have shown that the inoculation of free and
(Ochrobactrum Rhizobium, Bradyrhizobium, Sphingomonas, encapsulated Enterobacter spp. can increase plant growth
Mesorhizobium), Betaproteobacteria (Achromobacter), (Vassileva et al. 1999; Morales-Garcı́a et al. 2011; Mad-
Gammaproteobacteria (Enterobacter, Stenotrophomonas and haiyan et al. 2013).
Pseudomonas) and Bacteroidetes (Sphingobacteria) among
others (Table 1; Fig. 1). The diversity of nodule-associated
bacteria in leguminous plants include (1) symbiotic NFB, such Microencapsulation and survival
as strains the genus Rhizobium, Bradyrhizobium, Azorhizobi-
um, Allorhizobium, Sinorhizobium and Mesorhizobium, (2) Previous studies have demonstrated that it is possible to
and free-living NFB bacteria or bacteria associated with NFB, obtain viable microencapsulated bacterial cells with spray
such as Azospirillum, Enterobacter, Klebsiella and Pseudo- drying (Schoebitz et al. 2013). As shown in Table 2, the
monas (Hayat et al. 2010). In relation to the bacterial genera polymer mixture containing sodium alginate and malto-
found in our study, studies have also described genera such as dextrin (treatments 1, 2, 3 and 4) presented a bacterial
Enterobacter, Achromobacter Pseudomonas and Stenotroph- survival greater than 76 %, which indicates that this mix-
omonas as diazotrophic bacteria associated with a wide variety ture provides a high protective action on bacteria during the
of plants (Ryan et al. 2009; Jha and Kumar 2009; Muthukumar microencapsulation process. When alginate was absent
et al. 2010; Madhaiyan et al. 2013). Respect to lupin plants, from the mixture (treatments 5 and 6), bacteria survival
Chen (2013) reported the presence of Bradyrhizobium strains was significantly (p B 0.05) lower with a value below
in Lupinus angustifolius L. as revealed by sequencing of 16S 60 %. The survival rate of the bacteria depends of the
rRNA gene and the 16S-23S-internal transcribed spacer effects of operating conditions of the spray drying process.
region, whereas bacteria belonging to the genus Ochrobac- In fact, Yu et al. (2010) reached a bacterial survival ranged
trum have shown the ability to form nodules in Lupinus albus between 57.84 and 84.57 % for gram-negative bacteria
(Trujillo et al. 2005). In relation to the occurrence of Rhizo- microencapsulated using as wall material gum arabic and
biales, this bacterial order is known to harbor diverse symbi- maltodextrin at different ratio (1:9), feed flow rate
otic NFB (Rhizobium, Bradyrhizobium and Mesorhizobium), (12.5 mL min-1) and inlet air temperature (160 °C).
which are widely studied due to their environmental signifi- Lower bacterial survival was obtained after the microen-
cance in biological N input in soils and soil fertility manage- capsulation of microorganisms such as Rhizobium (John
ment of cultivated lands (Bottomley and Myrold; 2007; et al. 2011) and Pseudomonas strains (Amiet-Charpentier
Olivares et al. 2013). In greenhouse conditions, dry matter et al. 1998), probably due to the simultaneous dehydration
yield of diverse legume and non-legume plants (radish, maize, and high temperature inactivation. Formulations of poly-
wheat, barley, lettuce, etc.) is increased by inoculation with mer mixtures used as vehicles are one of the most viable
members of Rhizobium, Bradyrhizobium and Sinorhizobium options for the immobilization of beneficial microorgan-
(Antoun and Prévost 2005). Some of these authors also isms in order to overcome the deficiencies of nitrogen in
mention the ability of these bacterial genera to (not exclu- legume crops. The mixture of sodium alginate and malto-
sively) (1) promote plant growth through the production of dextrin as a polymer matrix has been successfully used as
phytohormone (i.e. indole acetic acid), (2) solubilize P from wall material for microbial microencapsulation with satis-
insoluble P forms in soils, (3) protect plants against phyto- factory results (Bashan 1998; Both et al. 2012). In fact,
pathogens (fungi, virus and insects) through the secretion of maltodextrin offers various advantageous properties as an
secondary metabolism compounds, and (4) break down phy- encapsulation matrix because it is osmotically inactive and
totoxic pollutants. presents a low viscosity, providing protection, interspacing
In relation to bacterial growth rates, the isolates Enter- for cells and strengthening the encapsulating matrix (Wil-
obacter sp. 5, Ochrobactrum sp. 11 and Enterobacter sp. son and Shah 2007; Chavez and Ledeboer 2007). By
14 showed higher growth rates (ranging between 0.32 and contrast, alginate possesses a high mechanical stability,
0.33 k h-1) compared to other assayed strains (ranging high porosity, viscosity and heat-resistance, and provides
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Table 2 Microencapsulation of Enterobacter sp. 14 by spray-drying using different mixtures of polymer materials
Treatment A:M ratio (w/w) Solids (w/w) Viscosity (mPa*s) [spindle] Moisture content (%) Product yield (%) Survival (%)
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