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a r t i c l e i n f o a b s t r a c t
Article history: Antibodies continue to be extremely utilized entities in myriad applications including basic research,
Received 2 November 2016 imaging, targeted delivery, chromatography, diagnostics, and therapeutics. At production stage, antibod-
Received in revised form 16 December 2016 ies are generally present in complex matrices and most of their intended applications necessitate purifi-
Accepted 17 December 2016
cation. Antibody purification has always been a major bottleneck in downstream processing of
Available online 22 December 2016
antibodies, due to the need of high quality products and associated high costs. Over the years, extensive
research has focused on finding better purification methodologies to overcome this holdup. Among a
Keywords:
plethora of different techniques, affinity chromatography is one of the most selective, rapid and easy
Antibody
Antibody purification
method for antibody purification. This review aims to provide a detailed overview on affinity chromatog-
Affinity chromatography raphy and the components involved in purification. An array of support matrices along with various
Affinity matrices classes of affinity ligands detailing their underlying working principles, together with the advantages
Affinity ligands and limitations of each system in purifying different types of antibodies, accompanying recent develop-
ments and important practical methodological considerations to optimize purification procedure are
discussed.
Ó 2016 Elsevier Inc. All rights reserved.
Contents
1. Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 85
2. Affinity chromatography: principle. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 86
3. Affinity chromatography: components . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 86
3.1. Chromatography matrix . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 86
3.2. Affinity ligands . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 88
3.2.1. Biospecific ligands . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 88
3.2.2. Pseudobiospecific ligands. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 88
3.2.3. Synthetic ligands . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 90
3.2.4. Affinity tags. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 90
4. Affinity chromatography: practical considerations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 91
4.1. Sample preparation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 91
4.2. Binding. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 91
4.3. Washing . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 91
4.4. Elution . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 91
5. Conclusions and future perspectives. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 91
Conflict of interest . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 92
References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 92
⇑ Corresponding author.
E-mail address: vijiayyar@gmail.com (B.V. Ayyar).
http://dx.doi.org/10.1016/j.ymeth.2016.12.010
1046-2023/Ó 2016 Elsevier Inc. All rights reserved.
S. Arora et al. / Methods 116 (2017) 84–94 85
Fig. 1. Structure of a typical immunoglobulin, IgG. IgG are large molecules of approximately 150–155 kDa containing 2 pairs of heavy and light chains composed of different
domains. The heavy chain consists of a variable domain (VH) and three constant domains (CH1, CH2, and CH3). The two heavy chains are connected by disulfide bonds (SS) in
the hinge region. The light chain has one variable domain (VL) and only one constant domain (CL).
86 S. Arora et al. / Methods 116 (2017) 84–94
Table 2
Binding characteristics of different immunoglobulin-binding proteins.
+ = weak binding, ++ = medium binding, +++ = strong binding, = no binding, * = information not available.
§
Binding occurs only if the appropriate kappa light chains are present. Reproduced with permission from [15].
88 S. Arora et al. / Methods 116 (2017) 84–94
[41]. Affinity membranes find widespread use in high-throughput mammalian serum, binds to mannose and N-acetyl-D-
applications and are available commercially as SwellGel disks. glucosamine residue [51], jacalin, isolated from jackfruit Artocarpus
integrifolia, binds to a-D-galactosyl groups [52]. Lectins are suitable
3.2. Affinity ligands for IgD, IgA and IgM purifications, which are otherwise difficult to
purify using bacterially derived ligands.
Affinity ligands are the principle component of a successful
affinity chromatographic set-up [19]. Typical qualities of a suitable 3.2.1.3. Antigens and anti-antibodies as ligands. Antigen-specific
ligand for affinity chromatography include affinity to the target, antibodies can be purified using whole antigen or specific peptides
specificity, immobilization feasibility, stability in harsh washing as ligands. Alternatively, ligands mimicking structure or sequence
and elution conditions, and retention of target binding capacity of the antigens can also be utilized. This approach leads to the
after attachment to the matrix. A plethora of research has been selection of antibodies with varying affinities, though requiring
conducted to develop and mend these ligands for improved protein further optimization of elution conditions based on the affinity of
purification. However, only a few of these ligands have found con- antibodies to be purified [53]. Similarly, anti-antibodies also offer
sistent use for antibody purification. These ligands are classified in high-specificity options for antibody purification. The constant
three broad groups: biospecific ligands, pseudobiospecific ligands domains of antibodies are used as potential targets for this process.
and synthetic ligands. Additionally, recombinant affinity tags serve However, antibodies have stability issues under harsh pH and high
as alternative ligands for purification of recombinant antibodies. salt concentrations [54], generally required for elution, leading to
leeching of antibodies from column. Single-domain antibodies
3.2.1. Biospecific ligands (sdAb) are especially useful for antibody purification as they have
Biospecific ligands are naturally derived molecules and usually small size, high affinity and stability and a three-dimensional
have high binding affinities to antibodies. This class includes anti- structure that enable binding to novel epitopes [55]. Additionally,
body binding proteins of biological origins, such as bacterially sdAb are easily produced in large scale using microbial systems
derived proteins, antigens, lectins and anti-antibodies. Biospecific and can be tweaked for specificity and affinity depending on the
ligands offer high specificity and selectiveness [42]. type of target. However, sdAb are monomeric, thus, limited in their
binding capacity (owing to their monovalency) during the purifica-
3.2.1.1. Bacterially derived proteins. Bacterially derived proteins tion process.
possess high affinity towards antibodies and, thus, are dominant Biospecific ligands, owing to their specificity and selectivity,
tool for antibody purification. Among these, protein A, G and L have been used extensively for purification of antibodies; however,
are the most commonly used ligands for purification of full- they also have various disadvantages associated with them, mak-
length antibodies. Protein A was isolated from the cell wall of Sta- ing them less attractive. Their manufacturing and processing is
phylococcus aureus and consists of five IgG-binding domains (desig- costly and laborious [56]. Other drawbacks associated with
nated E, D, A, B and C) [36]. Protein A binds to the Fc region of IgG biospecific ligands include low stability, lot-to-lot variability, high
at the junction between its CH2 and CH3 domains [38] and the risk of contamination and toxicity, ligand leakage, difficulty with
heavy chain variable region between CDR2 and CDR3 of VH3 family sterilization, low binding capacities, limited life cycles and low
[43]. Protein G was isolated from C and G groups of Streptococcus scale-up potential [56,57]. Additionally, they are difficult to immo-
spp. and binds strongly to the Fc region of IgG and with low affinity bilize in proper orientation owing to their large size. Consequently,
to the CH1 domain of Fab region [41,44]. In addition to IgG, protein alternative ligands have regularly been researched to overcome
G also binds to albumin, a2 macroglobulin and kinogen [45] which these limitations.
leads to reduced purification efficiencies. Both protein A and G
bind to antibodies from different species, with varied affinities 3.2.2. Pseudobiospecific ligands
based on their subclasses and source (Table 2). While protein A Pseudobiospecific ligands, a group alternative ligands, exploit
binds only to certain species and antibody subclasses; protein G intrinsic properties of the immunoglobulins as they are developed
is broad-spectrum and possess low binding capacity and is less on the basis of multiple non-covalent forces involved in the inter-
stable during harsh elution steps. Over the years recombinantly action of immunoglobulins with affinity ligands. These ligands are
engineered forms of protein A and G, overcoming their drawbacks, promising candidates as they are cheaper, robust, less toxic, struc-
were developed. For example, a genetically engineered protein A turally well defined, and highly stable as they meet the standards
and G fusion protein was developed, combining the IgG binding of good manufacturing protocols (GMPs) involving harsh sanita-
domains of both protein A and G. This fusion protein binds to all tion or sterilization conditions [58,59]. Their affinity is relatively
the human IgG subclasses (Table 2) [46–48]. lower than the biospecific ligands, but it is sufficient enough to
Protein L, isolated from Peptostreptococcus magnus, is another ensure specificity and selectivity towards target antibody [60].
bacterial protein that is useful for antibody purification. Protein L Some of the most common pseudobiospecific ligands used in the
has nanomolar affinity towards kappa (k) light chains of variable purification of antibodies include thiophilic [61,62], hydroxyap-
region of antibody. Though, it binds only to j1, j3, and j4 subclass atite [63], L-histidine [64–66], chelating metal ions [67,68] and
of the antibody light chains, not recognizing j2 and k subgroups mixed mode ligands [69,70]. The development of pseudobiospeci-
and thus, has the ability to bind to the different antibody isotypes fic ligands for the purification of antibodies begun in early nineties
(IgG, IgM, IgY, IgD and IgE) (Table 2) [17]. and since then several products, such as Thiosorb, T-gel, HA-
Ultrogel, and MEP HyperCel were commercialized and used
3.2.1.2. Lectins. Lectins are carbohydrate-binding proteins that bind extensively.
specifically and reversibly to the glycosylation sites on the antibod-
ies rendering them useful for antibody purification. Some of the 3.2.2.1. Thiophilic adsorption chromatography (TAC). TAC is based on
common lectins used for antibody purification include con- the specific propensity of the immunoglobulins to bind with the
canavalin A (Con A), wheat germ agglutinin (WGA), mannan- thioether-substituted organic sulfone compounds, in a reaction
binding protein (MBPs), and jacalin. Con A, isolated from Canavalia termed as thiophilic interaction [71]. TAC is based on the utiliza-
ensiformis, binds to a-D-mannose and a-D-glucose [49,50], wheat tion of a synthetic pseudo-affinity matrix, termed thiophilic gel
germ agglutinin (WGA) binds to the sialic acid and molecules con- (T-gel) [72]. T-gels are the most commonly used adsorbent, and
taining N-acetyl-D-glucosamine residue [50], MBPs, isolated from adsorption depends just on the presence of a kosmotropic salt.
S. Arora et al. / Methods 116 (2017) 84–94 89
T-gels are synthesized by a reaction between divinylsulfone and 2- effective when used along with chloride gradients as it helps in
mercaptoethanol and the chemical formula for an immobilized better removal of host cell proteins, leached protein A, DNA, endo-
ligand can be depicted as agarose-CH2-CH2-SO2-CH2-CH2-SCH2- toxin, and virus [95].
CH2OH [73], indicative of the presence of a linear ligand with
two sulfur atoms. Sulfur atoms provide specificity for selective 3.2.2.3. Hydrophobic charge-induction chromatography (HCIC). The
binding of the immunoglobulins under high salt concentrations. HCIC method is based on the usage of dual-mode ionizable
Due to their small size and high charge density, phosphates and hydrophobic ligands in a pH-dependent manner [96]. As protein
sulfates are the most commonly used salts in the buffer system binding occurs in almost neutral conditions, this method represent
applied in TAC. Composition of the buffer system is determined a near physiological condition for antibody purification. Both thio-
empirically, depending on the free energy of hydrogen bonding philic adsorption chromatography and hydroxyapatite chromatog-
or on the basis of Hofmeister series, so as to avoid protein precip- raphy, require high salt concentrations; whereas, HCIC only
itation in the presence of high salt concentrations [71]. Bound requires variation in pH as the modification of pH of the mobile
immunoglobulins can be eluted by lowering salt concentration, phase induces a net ionic charge on the ligand and the adsorbed
however, salt concentration for the elution of different antibody antibody, leading to the electrostatic repulsion-induced desorp-
formats require optimization to achieve highest recovery of the tion. The 4-mercapto-ethyl-pyridine (MEP) attached via a
antibody in its purest form. Boschetti has reviewed a range of thio- hydrophobic spacer arm to the hydrophilic matrix is a dual-mode
philic ligands elsewhere [62]. ligand of choice for selective adsorption of antibodies. Presence
The simplicity of control over the adsorption behavior as a func- of pyridine ring on MEP provides an added advantage in the sepa-
tion of salt concentration, chemical stability of the matrix, high ration of immunoglobulins [97,98]. When sample is applied with-
protein binding capacity, and affinity toward several classes of out adjustment of ionic strength or pH, the IgG dynamic binding
antibodies has made TAC a method of choice in several applica- capacity ranges from 25 to 35 mg/mL at pH 7–8 (physiological
tions [17]. Thiophilic chromatography has found application in pH). MEP, which is non-charged structure in neutral conditions
the purification of IgG from cows [74], mouse hybridoma [74,75], (pKa 4.8), binds efficiently with antibodies; and under acidic pH
IgG from human and rabbit [76]; IgY from egg yolk [77]; F(ab0 )2 (4.0–4.5) of the mobile phase, a net positive charge is imparted
[78]; and Fab fragment [61], and scFvs [79] from E. coli. on both the ligand and bound target molecules, resulting in the
Besides salt-dependent thiophilic ligands, development of the desorption of the antibody owing to the repulsion forces between
salt-independent mercaptoheterocyclic ligands to capture IgG with the sorbent and positively charged antibody [99]. Due to simplicity
higher adsorption capacity were reported [73]. For instance, Qian of the method, purification and concentration effects are achieved
et al. [80] synthesized thiophilic magnetic polymer beads which in a single step [100]. Chemical properties of MEP render it inert,
were found to have strong specificity against IgG in a salt- thus, not interacting with impurities of the sample; enhancing
independent manner. Magnetic beads were functionalized by using the washing-off of impurities in the flow-through [101]. Taken
a heterocyclic ligand of 2-mercaptonicotinic acid (MNic). Beads together, HCIC is an efficient method of purifying antibodies from
were prepared by microsuspension polymerization with divinyl- samples obtained from diverse sources, such as animal sera, ascites
benzene (DVB) and vinyl acetate (VAc). By using these beads fluid, and cell culture supernatant [84,102–104].
authors were able to purify antibodies, with >94% purity and
>99% bioactivity, from human serum in batch mode and under 3.2.2.4. Immobilized metal affinity chromatography (IMAC). In IMAC,
physiological conditions, with the assistance of magnetic decanta- a metal ion functions as an affinity ligand which is bound to a
tion [80]. chelating agent attached to a support. The adsorption of proteins
is based on the interaction between electron donor groups located
3.2.2.2. Hydroxyapatite chromatography (HAC). Hydroxyapatite on the protein surface and immobilized metal ions [105]. Amino
(HA), (Ca5(PO4)3OH)2, is a naturally occurring compound, and its acid moieties such as histidine, cysteine, serine, glutamate, aspar-
synthetic forms are available both as calcium and phosphate com- tate, and tryptophan present on the outer surface of a biomolecule,
pounds and as an alternative fluorapatite (FA), (Ca5(PO4)3F)2. HA is contain electron donor atoms either in their amino terminus or in
used as porous ceramic microsphere to generate mixed-mode their side chains and, therefore, have higher affinity towards
resin. HA mediates its interaction through (i) P-site, comprising transitional metal ions such as Co2+, Cu2+, Fe2+, Ni2+, and Zn2+
of a triplet of phosphate groups wherein each phosphate with a [106–111]. The ligands for IMAC are designed to exploit this very
pair of negatively charged oxygen residues interacts with amino property of biomolecules in general, and antibodies in particular,
groups of proteins, similar to cation exchangers; (ii) C-site, a dou- wherein ligands are coupled to a covalently linked chelating com-
blet of positively charged calcium residues that mediates calcium pound and spacer group attached to the matrix [112]. Chelating
chelation of protein through carboxyl clusters, and calcium coordi- compounds vary from bidentate (a-amino phenylalanine tetra-
nation on DNA through phosphoryl groups in a metal-affinity type zole) [113], tridentate (iminodiacetic acid, IDA), tetradentate
of mechanism. The P-site and C-site bindings are cooperative; (nitrilotriacetic acid, NTA), to pentadentate (tris (carboxymethyl)
exhibiting positive cooperation with antibodies and negative coop- ethylene diamine) compounds, based on the number of occupied
eration with other solutes. Traditional elution strategies involve coordination bonds.
use of phosphate [81–85] or sodium chloride gradients [81–83]; Several reports indicated use of IMAC for the purification of
however, recently sulfate and borate gradients were also employed antibodies from different species and subclasses [114–123]. Anti-
[83]. Application of HAC in the one-step purification of IgG was bodies purification up to a purity level exceeding 90% in a single
reported to be equally effective as protein A and protein G step can be achieved using IMAC [124,67]. This efficiency emanates
[81,82,86–88]. HAC method was also adopted to support IgA from the cluster of histidine residues present at the junction of the
[63,89,90] and IgM [89,91–93] capture, with capacities ranging second and third constant domains of the heavy chain of an anti-
from 10–20 mg/mL and yields with 90% purity. HAC’s application body [67,115,125]. These histidine moieties endow the antibodies
in removal of antibody aggregate during large-scale production with high affinity towards immobilized metal ions. According to an
for industrial setup has been highlighted [83,94,95]. In these estimate, copper-immobilized IDA can bound up to 14–16 mg/mL
applications, polyethylene glycol (PEG) is recommended. PEG is of polyclonal or monoclonal antibodies [68]. IMAC has been uti-
proposed to enhance aggregate removal as it imposes secondary lized in the purification of IgG from different sources e.g. human
size selectivity on HA [95]. PEG addition is suggested to be most [115], humanized murine IgG [125], and goat IgG [126].
90 S. Arora et al. / Methods 116 (2017) 84–94
IMAC has been the method of choice for the purification of goat, and rabbit. Another screening of a synthetic tetrapeptide
recombinant proteins, especially under denaturing conditions, library targeted against anti-granulocyte macrophage-colony stim-
e.g. inclusion bodies in E. coli expression system, which are nuclear ulating factor (GMCSF) mAb from mouse ascetic fluid resulted in
or cytoplasmic aggregates of protein and require high concentra- the identification of Ala-Pro-Ala-Arg peptide [140]. Similarly, Fas-
tions of chaotropic salts for solubilization. The recombinant anti- sina et al. [141] screened a synthetic multimeric peptide library
bodies could be synthesized so as to have a histidine tag at for purification of IgG from human serum.
amino- or carboxy-terminal of the protein to enhance millimolar Besides screening peptide library, a group of ligands were syn-
affinity towards metal ions. Following chromatographic step, the thesized as biomimetic ligands to extract properties of natural
fusion tag can be efficiently cleaved and removed by proteases ligands. Examples of combinatorial approach in rational design of
[127]. This approach has extensively been utilized in the purifica- ligand came from two different studies [142,143] which synthe-
tion of Fab fragments [128] and scFvs [5,129,130]. Depending on sized ligand mimicking protein sequence of the IgG-Fcc receptor,
the antibody properties, following purification, proper folding can implicated in the binding of proteins to IgG-Fc region for the purifi-
be achieved through a combination of different approaches [131]. cation of mouse and human IgG. Sugita et al. [142] generated an
Guo et al. used an on-column refolding system to obtain functional octameric peptide library using spot-synthesized peptide array
protein from inclusion bodies by fusing single chain Fv (scFv) anti- and identified two peptide sequences by amino acid substitution
body fragment with interferon-c inducible protein 10 (IP10), a che- assay. Similarly, Gong et al. [143] fine-tuned Fc-III peptide, identi-
mokine inducing chemotaxis of activated T- and NK-cells [132]. fied from a phage display screening with a cyclic peptide library
Overall, IMAC is superior to protein A or G methods owing to [144], and synthesized Fc-II-4C peptide containing two disulfide
the robustness of system in terms of IMAC matrices, lower cost, bonds, thus, displaying higher stability and affinity against IgG
and mild elution of proteins with salts [133]. However, proteins from various species. Several other groups had made attempts to
without affinity to metal ions are not applicable to IMAC. Addition- identify small ligands mimicking protein A [145–149].
ally, buffers containing chelating agents, such as EDTA, ammonium
salts, can strip metal ions from resin, posing limitations to IMAC 3.2.3.2. Non-peptidyl ligands. Non-peptidyl ligands, also known as
mediated purifications. non-peptidic ligands (NPL), were initially prepared following
exploration of potential binding site on the target protein. These
3.2.2.5. Boronate affinity chromatography (BAC). The BAC method ligands were developed to overcome weakness of synthetic-
utilizes boronic acid or its derivative as ligands [134]. Boronic acids peptide ligands, which had vulnerable peptide bonds that are fis-
form a stable cyclic ester in alkaline aqueous solution with a com- sile and subject to degradation. The basic element of NPL were
pound containing cis-diol groups. Dissociation of boronic-esters is developed based on chemistries involving peptoids, protease-
achieved by changing medium to an acidic pH. BAC utilizes pres- resistant peptides synthesized by placing replacement at the nitro-
ence of glycans in the Fc region of the antibody for purification gen atom rather than at the a-carbon, or by incorporating ethyl
[135,136]. Recently, Liu et al. [137] prepared a restricted access moiety between the two carbon atoms, thus, assigning novel sec-
boronate affinity porous monolith, as a mimic of protein A for ondary structures to polypeptides [150,151]. Conversely, non-
the specific capture of antibodies. This biomimetic was based on peptidic low molecular weight compounds were chemically syn-
using steric hindrance of the porous monolith and using boronic thesized with high affinity and specificity for IgG. These de novo
acid as specific ligand. BAC holds promise owing to its low cost, synthesized and optimized molecules had very high affinity, dura-
high stability, and fast elution kinetics based on changing pH bility and capacity, with very low cost for compound production.
condition. Examples of NPL include dichloropyridine (AvidAL) [152], thio-
philic gel (divinylsulfone activated agarose) and its derivatives
3.2.3. Synthetic ligands coupled with hetero-aromatic ligands [62,153], and histidyl-
Advancement in high-throughput lead generation and screen- Sepharose matrix [66,154]. Several other small ligands were
ing by high-resolution methods such as X-ray crystallography designed based on the properties of textile dyes as biomimetic
and nuclear magnetic resonance (NMR) has helped in the develop- ligands, by following NPL approach [155]. Among them, chlorotri-
ment of compounds that can overcome weaknesses associated azine based dyes led to the synthesis of de novo designs of several
with natural ligands, such as fragility, and extreme costs in produc- such compounds, e.g. ligand 22/8 synthesized from artificial pro-
tion and procedure optimizations. These new generation com- tein A (ApA) [156,157] and cyanuric chloride [158]. These
pounds are low in molecular weight and more environment triazine-based compounds were further modified and made avail-
friendly due to increased options of their recycling. These com- able commercially as MAbsorbent A1P and A2P. Another group of
pounds are generated either by using a template, based on ratio- NPL compounds derived from dyes, based on their ability to bind
nale design considering its structure and functional aspect or proteins selectively and in a reversible manner, include, Cibacron
using combinatorial approach to identify a template from a library; Blue FG-3A and mono- or di-chloro-triazine (developed by cou-
or a combination of both the approaches by generating a library pling azo, anthraquinone, and phatalocyanin choromophores con-
based on a template [138]. The product generated by this approach jugated with a chlorotriazine ring) [156,157]. The derivation of
could be further modified to obtain desired specificity and affinity these synthetic ligands opened up numerous possibilities of using
and, thus, minimizing efforts in process optimization. The products combinatorial strategies to develop low cost and stable ligands for
generated could be divided into two broad categories based on the the purification of antibodies.
starting material viz. peptidyl and non-peptidyl ligands.
3.2.4. Affinity tags
3.2.3.1. Peptidyl ligand. Amalgamate of different combinations of Affinity tags are short polypeptide sequences, proteins/protein
amino acids in form of a small peptide used in the purification of domains or enzymes, appended as fusion partners with the target
its cognate protein are termed as peptidyl ligands. Yang et al. proteins. These tags have high specificity to different ligands and,
[139] screened a hexamer peptide beads library composed of his- thus, they find considerable use in purification of recombinant
tidine at amino-terminus and positively charged amino acids at antibody formats owing to the associated high yields and purity
carboxy-terminus flanking the aromatic amino acids. This obtained in just a few steps [159,160]. The cDNA of the desired
approach led to the identification of a peptide, His-Trp-Arg-Gly- tag is incorporated either onto the N- or C-terminus of the anti-
Trp-Val, which can purify IgG subclasses from human, cow, mouse, body expressing gene, so that the tag peptide/protein is expressed
S. Arora et al. / Methods 116 (2017) 84–94 91
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