Professional Documents
Culture Documents
Genetics of Performance
Traits
A. RicardA.
Genetics
15 etRicard
of 1, E.Traits
Performance
al. Bruns2 and E.P. Cunningham3
1Institut National de la Recherche Agronomique, Station de
Introduction 411
Thoroughbreds 412
Introduction 412
Heritability of track performance 412
Rate of genetic improvement 414
Limits to performance? 414
Horses for courses 417
Trotters 418
Speed and quality of trotter 418
Earnings 419
Are there still true precocious performances? 422
A new way to measure success and career 423
The problem of non-recorded horses 426
Conclusion 426
Sport Horses 427
Measurements of performance 427
Heritability of performance traits 429
Genetic relationships between performance traits 432
Concluding remarks 434
References 434
Introduction
Horses are used for a much more diverse range of functions than is generally
appreciated. This chapter deals with performance traits of race and sport
horses. The first two sections of the chapter consider performance traits in
two of the most common groups of racehorses, Thoroughbreds and trotters.
©CAB International 2000. The Genetics of the Horse (eds A.T. Bowling and A. Ruvinsky) 411
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Thoroughbreds
Introduction
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Ten studies were given in which heritability of racing time was estimated.
Several of the estimates were based on quite small data sets. For those with
reasonable amounts of data, estimates ranged from 0.09 to 0.78, but most
values were in the range 0.10–0.20.
Since the review of Tolley et al. (1985), a number of studies with large
volumes of data have been completed. Gaffney and Cunningham (1988)
published estimates of heritability of Timeform (handicap) ratings based on
full year 3-year-old ratings of 31,263 horses from 2087 sires. The estimates
ranged from 0.39 ± 0.01 (regression of offspring on dam) to 0.76 ± 0.02
(regression of offspring on sire). As in earlier analyses of similar data, the
authors concluded that sire-based estimates were likely to be biased upwards.
Oki et al. (1995) published estimates of heritability of racing time for
various race lengths, based on performances of over 25,000 horses. The data
were approximately equally recorded on dirt and turf. The values on dirt and
turf were broadly similar, but there was a clear tendency for heritability values
to be lower as the length of race increased over the range 1000–2000 m (see
Table 15.1). In keeping with the earlier results summarized by Tolley et al.
(1985), the heritability estimates for racing time in this study were lower than
for the other measures of performance reported by other authors.
Williamson and Beilharz (1998) carried out an analysis of almost 0.5
million individual race records from Australia. They used three measures:
lengths (distances between horses at the end of a race), ranks and a function
of earnings. By an approximately linear adjustment for length of race, they
derived a speed rating and a stamina rating for each horse. They then
calculated heritabilities for all of these measures. The resulting estimates were
generally higher than those from other studies. Most estimates were above 0.5,
with values for the stamina rating being consistently higher than those for
speed (approximate average of 0.65 against 0.49).
Langlois (1996) has discussed the difficulties in obtaining reliable
heritability estimates in Thoroughbreds. He concluded that racing speed is not
a useful criterion because it has low heritability and is not, on its own, a major
determinant of success. He favoured ranks. He also presented results showing
a consistently higher heritability of log earnings calculated by regression of
offspring on dam than by regression on sire. This effect was attributed to
non-genetic maternal contributions to the offspring, as well as to the lower
selection and, therefore, greater genetic variability in female parents.
The overall picture emerging from these numerous studies is a reasonably
consistent one. It shows that the heritability depends on the measure used.
Table 15.1. Heritability of racing time for races of different lengths (Oki et al., 1995).
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Time measures generally had a heritability in the region 0.1–0.2, with the
higher values for shorter races. For handicap and earnings measures, reported
heritabilities were generally higher, frequently in the range of 0.3–0.4.
Limits to performance?
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Fig. 15.1. Trends in winning times for the English Classics. Each point is an average of 10
years.
winning times are continuing to improve in the shorter races, common in USA,
while the plateau is most evident in longer races such as the St Leger
(Fig. 15.1). Thus, the physiological limit might come into play only beyond a
certain threshold of effort.
If this hypothesis is true, then it should be possible to identify the physio-
logical elements which set a limit to performance. The probable limiting
factors will depend on the length of the race. The energy required for muscle
contraction is derived from glucose (or its storage form glycogen). Energy
release from glucose comes in two stages. The first, anaerobic, stage releases
less than 10% of the energy available and produces lactic acid which
accumulates in muscle tissue. The second, aerobic, stage requires oxygen, and
releases the energy stored in glycogen. The oxygen supply has the additional
function of removing lactic acid. In theory, either of these factors – the
ultilization of oxygen and glycogen for aerobic metabolism during prolonged
events, and the production and clearance of lactic acid following anaerobic
metabolism during short-term events – could be limiting factors.
In every race, both kinds of muscle metabolism are involved. Although the
flow of blood to the muscles, and hence the supply of oxygen, increases dra-
matically during exercise, maximum effort could not be sustained by aerobic
contraction alone. Anaerobic contraction may be limited by glucose availability
and lactic acid accumulation. The balance of these two sources of energy sup-
ply to muscular activity depends on many factors, and particularly on the
amount of activity involved, i.e. the length of the race. The 30 s sprint-type
races of American Quarter Horses are mainly anaerobic. The 2.5 min required
to run the English Classics shifts the balance to the point where most of the
energy supply is aerobic. This difference in the energy supply route may
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indeed be part of the explanation for the apparent limits to performance for
the longer races, while records continue to be broken in the sprints.
The physiology of blood circulation and exercise in horses has been
reviewed by Fregin and Thomas (1983). Figures 15.2 and 15.3 present two
important sets of data from their report. They measured a number of metabolic
indicators as the work effort was increased in a number of horses. With
increasing effort, heart rate increased steadily from a resting figure of about 40
beats min−1 to a maximal rate close to 200. At the same time, blood volume per
beat increased, also linearly. The result is a dramatic linear increase in blood
circulation with increasing effort. At full stretch, a 500 kg horse is pumping
250 l of blood through their system each minute, equivalent to ten times his
blood volume (Fig. 15.2). The important point is that blood circulation and
oxygen uptake increased linearly over the range.
Figure 15.3 shows blood lactic acid levels over the same range of effort.
Here, it is evident that lactic acid clearance is not keeping pace with increasing
effort, and is indeed becoming critical at maximum effort. What this suggests is
that the limiting factor in performance may well be lactic acid accumulation.
These conclusions are supported by the results of Evans et al. (1993),
who found a strong relationship between blood lactate concentration after a
strenuous treadmill test, and Timeform rating, in 14 Thoroughbred horses. The
area is reviewed by Ronéus (1996) who also found a significant correlation
between plasma lactate levels and speed over 1600 metres in Standardbred
trotters.
Fig. 15.2. Cardiac output (Q) and heart rate (HR) at rest and during a five stage treadmill exer-
cise test on an 11.5% gradient in five sedentary horses (redrawn from Fregin and Thomas, 1983).
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Fig. 15.3. Relationship between lactic acid concentration and work effort (redrawn from Fregin
and Thomas, 1983).
A recent study from Japan (Oki et al., 1997) adds weight to the view that the
genetics of performance depend very much on the length of the race. They
calculated genetic correlations between performances at different race lengths,
on both dirt and turf, from over 20,000 performance records. Race lengths
varied from 1000 to 2000 m. As the difference in the race lengths increased, the
genetic correlation decreased. At a difference of 400 m, the correlation was
0.91; at 600 m difference it was 0.78, and at 800 m the correlation was 0.68.
This pattern was very much the same on turf and dirt tracks. The genetic corre-
lations between performance on dirt and turf are even lower, and depended
on the length of the race. At 1200 m, the correlation was 0.69, while at 1800 m
it was 0.31.
Thus if a horse is evaluated on dirt, the effectiveness of selection for
performance on turf is about half what it would be if comparable data from its
turf performances had been used. This corresponds to an average correlation
between performance in these two environments of 51%. The loss of effective-
ness is not so great at short distances as it is at long distances: at 1200 m the
reduction is only 31%, while at 1800 m, it is 69%.
Within any racing environment, turf or dirt, selection at one length for
performance at another becomes progressively less effective as the distance
between the two lengths increases. If the difference between the two lengths is
200 m, about 5% of effectiveness is lost. At 400 m, this is about 9%, at 600 m
difference it is 22%, and at 800 m difference the loss in effectiveness is 32%.
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However, the effect of different lengths is in general much smaller than the
effect of turf versus dirt.
These results indicate that, to a considerable degree, different genetic
factors are involved in performance in longer or shorter races and on different
kinds of track. They could have serious implications for the evaluation of
animals based on American data (short races, dirt tracks) for performance in
European (longer races, turf tracks) races. It means that new weight (and dis-
count) should be applied to data generated in a different racing environment.
The net conclusion is to reinforce the old notion of ‘horses for courses’.
Trotters
Performance comparison in trotters deals with the general problem of
measuring performance in races with additional complexity due to the type of
exercise and breed. Performances in trotters, in contrast to Thoroughbreds, are
characterized by qualifying tests before entering races; greater longevity in
their racing career; relatively shorter term of selection for trotting speed (since
early this century); and the inclusion of more than one breed, i.e. Standard-
bred, French trotter and Nordic local breeds. Firstly, classical measures (speed
and earnings) will be analysed and then new methodology introduced, to give
a better evaluation of performance. Performance for non-recorded horses will
be considered, and the general trend to a precocious racer will be discussed.
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Klemetsdal (1989) found a value of 0.03 for repeated racing time for Standard-
bred and 0.18 for Norwegian trotter. In Arnason et al. (1989), heritability for
best racing time ranges from 0.45 to 0.26 according to the limit age of
the record (3–13 years old); a reasonable mean seems to be 0.29 (Swedish
Standardbred) and 0.25 (North Swedish trotter). In Italy, for repeated annual
best time (up to 6 years old), Silvestrelli et al. (1995) found a value of 0.37. No
clear rules exist regarding over- or underestimation of heritability when
models do not take into account racing conditions or when best record is used
instead of all recording times. According to recent selection for speed in trot,
this trait remains heritable and genetic increase is observed in most countries.
There is no doubt of the possibility to select for this trait, but the search for
other traits to record performances nevertheless is necessary in order to report
the complete aptitude of a horse to win a race. Speed is only one quality of a
good racehorse, its capacity to adapt to race conditions and to win at a certain
pace is the complete goal.
Earnings
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Fig. 15.4. Distribution of measures based on earnings – example of French trotters in 1994.
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Early performances
Age at first start in trotters was analysed by Saastamoinen and Nylander (1996a,
b). Heritability estimates for age at first qualifying start, passed qualifying start
and first race were low (0.04–0.16) and lower for the local breed (Finnhorse
trotter) than for the Standardbred. In the absence of other results, these
heritability estimates suggest that early start of a career depends mainly on
environment.
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Underlying performance
To measure one performance in one race, the problem is to evaluate the level
of the race and the level of one rank in this race. With regard to earnings, the
measure of the level of the race is supposed to be the total endowment, and
level of one rank is a linear function of it (after transformations). However, the
level of the race is only the level of competitors because the only reason a
horse is ranked at a given place is because the horse ranked before has beaten
it and it has beaten the horse ranked behind. The level of a rank cannot be a
linear scale independent of the number of starters; this is only the difference
between one performance of a horse and those of the others.
To explain the final ranking of a race, without introducing any subjectivity,
let us imagine that all horses in the race performed a physical effort. This effort
may be designed by a classical model with a normal distribution and expecta-
tion based on the influence of environmental and gene effects. The apparent
result of the race, the ranks, is the expression of the hierarchy between these
efforts. Thus, to estimate the effects of the model, inference will be based on
the probability of obtaining the ranking of underlying performances instead of
the probability of obtaining a measured performance. Figure 15.5 illustrates a
race with three horses (A, B and C) with three different expectations. Table
15.4 contains the probability of each possible result of the race, i.e. different
ranking, according the difference of the mean value of the horses.
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Fig. 15.5. Example of a race with three horses – underlying performance and probability of
ranking.
Table 15.4. Probability of ranking for the sample race (deviation between
mean value of performance of A and B: 1.2, B and C: 0.6 in unit deviation).
A–B–C 49
A–C–B 27
B–A–C 15
B–C–A 3
C–A–B 5
C–B–A 2
with (1).. (n) the ranks of horses in the event, y(t) the underlying performance
of the horses ranked t, ϕ the normal density, µ(i) the location parameter of the
horse ranked (i) (equal to environmental and gene effects).
This model is actually applied for jumping, dressage and 3-day eventing
in France. It will also be applied in the next few years in trotters and has
already been tested on a single year file (Tavernier, 1994b). The file contains
9228 races run in 1989 by 13,065 horses and represents 129,379 starts. The
model includes sex, age, distance of backing (0, 25 m, 50 m) and optionally
trainer effect. The repeatability was estimated to be 0.26. The validity of the
model was measured by the posterior probability of races calculated with the
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Trainer effect
All cumulated measures are unable to take into account a trainer or driver
effect. This effect also is often missing from time records. With this new mea-
sure of performance, it is possible to add this type of major environmental
effect. With the previous French file, a model with and without a trainer effect
was tested. A total of 529 different trainers were identified, with grouping of
trainers with less than ten horses. The variance of horse effect was reduced but
the validity of the model was better: the posterior probability of each race is
multiplied by 17 comparing it with random instead of 11 with no trainer effect.
The correlation between horse effect in the model without a trainer effect
and that with a trainer effect is 0.88. The correlation between trainer effect and
horse effect in the model with a trainer effect is −0.05; without a trainer effect it
is 0.38. Here again, the new method seems to be more adaptable to the true
situation than other measures.
Random regression
The model of underlying variables solves the problem of measuring success in
one race. The possibility remains to measure the evolution of such a perfor-
mance during life. A repeatability model suggests a constant mean and only a
residual variation throughout life around it. A new development will be the
design of underlying performance with time. Random regression models,
which explain performance as a function of time, provide new methods in
genetics. Unlike usual production (lactation or growth), there are no reference
curves for the natural career. Thus different regressions must be tested with
different visions of time. Time may be appreciated as starts or days, days from
birthday or from the first race or days between races (rate of use). No applica-
tions are yet available for trotters but work has begun in jumping horses with
an example model as follows:
y i =bi 1 + bi 1 t + ai 0 + ai 1 t + pi 0 + pi 1 t + ei
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effect common to all performances of the horse; eijk, residual. The degree
0 refers to an effect independent of time; 1 refers to regression terms as a
function of time t.
The preceding discussions suggest that all horses have some available perfor-
mances. In fact, there are two possible scenarios: some horses never come on
to a racecourse and some would never be ranked or earn some money. In the
second case – the starter but non-winner horses – different strategies have
been used, depending on the trait. When log (earning) is used (by year or
event), the usual choice is to discard starts without earnings (Langlois, 1984).
Some authors add 1 to calculate the logarithm (Silvestrelli et al., 1995). Cutting
off the data introduces selection and therefore cannot be recommended.
Applying the same value to non-winner horses (Arnason et al., 1989; Katona
and Distl, 1989; Minkema, 1989; Saastamoinen and Nylander, 1996b) without
any reference to the level of the race is also a mistake. The strategy of the new
model based on ranks makes it possible to take into account unplaced
horses as they were beaten by the last-placed horse. Therefore, the value of
unplaced horses is modulated at each event by the value of horses which
participated into the event. This solves the problem of identical value. For the
first case – horses which never enter a race – no information is available about
this lack of data: they may be very good horses which have been exported
to another country or perhaps they are just poor trotters. Klemetsdal (1992)
simulated a population which would be pre-selected before entering a trotter
race on a hypothetical trait correlated with future earnings. He proved that
genetic trend was underestimated when ignoring this fact and that applying
a zero to non-starters is a better way than cut-off to estimate genetic trend.
Arnason (1996) suggested a multiple trait approach with a variable defining the
status of the horse (starter or not) and proved that it is an easy and good
method to avoid biases in genetic progress and an aid to limit inbreeding.
Conclusion
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Sport Horses
Measurements of performance
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Table 15.5. Selected performance data of sport horses measured in station or field tests.
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Cumulated points per year in show jumping Log10 Foran et al. (1994)
Highest level during life time in dressage and Square root Huizinga and van der Meij
show jumping (1989)
Annual earnings in show jumping Log10 Silvestrelli et al. (1995)
Earning at each place in dressage and show Ln Meinardus and Bruns
jumping (1989)
(Foran et al., 1995). The level of event depends on the quality of horses started
in one competition. One solution to account for differences in the quality of
competitions is to include competition as a fixed effect in the model describing
the data for estimating genetic parameters. Tavernier (1991, 1994b) proposes
an appropriate interpretation of the rank as the probability of ranks which may
solve the problem of the mean level of each event as well as of the variability
of competitors (Ricard, 1998). Another obstacle in working with competition
data is the availability of data. Some horses never come to a competition, they
are used in breeding or have little chance of winning, and other horses are
never ranked and never earn money. Recording systems which ignore horses
without earnings (Meinardus and Bruns, 1989) introduce selection and biases.
Adding a constant to unplaced horses is recommended by Ricard (1998) if
the level of competition is taken into account. Finally, the quality of the rider
influences the ranking within events as well. The confounding of the genetic
effects of horses with the quality of riders and level of events is a problem in
estimating breeding values of horses which is tackled through the definition of
variables and appropriate linear models.
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Table 15.7. Heritability estimates of performance traits of young horses tested at station or in
field tests.
Heritability
• Basic gaits, riding and jumping ability are subjectively scored variables
with sufficiently high heritabilities.
• Performance testing at station leads to variables with higher heritabilities
than field testing, i.e. environmental effects are controlled and eliminated
to a higher degree when testing at station.
• Scores for parcours jumping show lower heritabilities than scores for free
jumping, i.e. in free jumping, external effects affecting the horse’s perfor-
mance through the rider are excluded.
• Multiple trait analyses (data set 3) lead to higher estimates of heritabilities
than single trait analyses (data set 5), i.e. combining data from the
stallions’ and mares’ test allows partial adjustment for the selection of
stallions joining the stationary performance test.
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Table 15.8. Heritability estimates of performance traits of sport horses tested in competitions.
Jumping competitions
Rank (transformed Blom score) 0.09 0.25 5
Rank (transformed Blom score, selected data) 0.02 0.09 5
Highest level during life time 0.16 4
Rank (transformed 1/2) 0.05 0.12 6
Earning (transformed log) 0.05 6
Earning (transformed log) 0.10 3
Cumulative lifetime points (transformed log) 0.28 7
Score 0.14 2
Rank 0.25 0.45 8
Error points 0.09 0.29 1
Dressage competitions
Highest level during life time 0.11 4
Rank (transformed 1/2) 0.11 0.27 6
Earning (transformed log) 0.10 6
Earning (transformed log) 0.11 3
Score 0.35 2
References: 1, Hascher (1999); 2 Brockmann (1999); 3, Schade (1996); 4, Van Veldhuizen
(1997); 5, Janssens et al. (1997); 6, Hassenstein (1998); 7, Foran et al. (1994); 8, Tavernier
(1990).
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selection in the data. Janssens et al. (1997) demonstrate the effect of ignoring
unplaced horses which substantially decreased the estimates of heritabilities
from 0.09 to 0.02. Similarly, when estimating heritabilities based on older,
selected horses, reduced estimates can be found depending on the data set
used (Huizinga and Van der Meij, 1989; Van Veldhuizen, 1997).
However, selection also takes place between events and between quality
groups of events; competitions might be grouped according to quality, training
and age of horses in A- (the lowest), L-, M- and S- (the highest) classes.
Defining performance data within those quality groups as separate traits and
then estimating heritabilities by applying multiple trait models can account
for the selection in the data. In this way, Hassenstein (1998) estimated
heritabilities in jumping competitions as 0.14, 0.07, 0.06 and 0.06, and in
dressage competitions as 0.17, 0.10, 0.11 and 0.13 for the four quality groups,
respectively. However, Aldridge et al. (1999) found an opposite trend in the
estimated heritabilities as 0.07 for the low level, 0.08 for the medium level and
0.10 for the high-level jumping competitions.
Defining the performance of horses in competitions through earnings
or ranks seems to be insufficient; most estimates of heritabilities based on
earnings and ranks, even after transformation, are around 0.10. However,
Brockmann (1999) analysed data from quality events for young horses, used
scores for describing performance and estimated heritabilities of 0.14 and 0.35
for jumping and dressage.
The higher estimates of heritabilities by Foran et al. (1994) and Tavernier
(1990) raise questions about the system of performance testing which should
lead to testing large and non-pre-selected progeny groups of stallions.
Due to the definition of the overall breeding goal in sport horses, genetic
relationships between performance traits are essential in defining breeding
objectives. Genetic correlations are estimated based on data from the stallions’
and mares’ tests. Again, only the latest studies are presented in Table 15.9.
The studies on genetic correlations can be summarized as:
• Positive genetic correlations exist between variables describing character/
temperament, basic gaits and riding ability of sport horses. The correla-
tions are moderate.
• High positive genetic relationships exist between basic gaits and riding
ability independently of the type of performance test.
• Between jumping ability and all other variables, no genetic correlations
are found. The estimates were slightly positive or negative and seem to
depend on the type of performance test since mostly negative correlations
were found when variables are measured in the stallions’ test. Similar esti-
mates were obtained based on competition data (Huizinga and Van der
Meij, 1989), whereby the estimates were between −0.06 and −0.27 based
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Table 15.9. Estimates of genetic correlations between performance traits within testing
schemes (stallions’ test above the diagonal, mares’ test below the diagonal)a.
on data from young stallions, but based on data from older stallions the
estimates were between −0.04 and +0.10.
Since the breeding objective is to improve the performance of sport
horses in competitions, the genetic relationships between the various testing
schemes are of paramount importance. Although the general principle in
breeding programmes is to test potential candidates for breeding as early as
possible, the testing schemes designed for young stallions and mares differ
from the normal situation in competitions. The indirect selection based
on the stallions’ and mares’ test is only reasonable if heritabilities and
genetic correlations are high. Table 15.10 summarizes estimates of genetic
correlations between corresponding performance variables in different testing
schemes.
The estimates indicate:
• The corresponding performance traits measured in stallions’ or mares’
tests are highly correlated.
• The genetic relationships between corresponding variables measuring
either riding ability/dressage or jumping ability in stallions’ tests and
competitions are highly positive (> 0.80).
• The genetic relationships between corresponding variables measuring
either riding ability/dressage or jumping ability in mares’ tests and compe-
titions are also highly positive (> 0.65).
• Performance traits measured in testing schemes as designed for young
stallions and mares are good predictors for the performance of horses in
dressage or jumping competitions.
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Walk 0.78(1)
0.95(5)
Trot 0.85(1)
0.95(5)
Gallop 0.74(1)
0.95(5)
Riding ability 0.90(1) 0.88(4) 0.68(3)
0.90(6) 0.68(6) 0.83(2)
0.83(2)
Jumping ability 0.88(1) 0.79(4) 0.64(3)
0.95(5) 0.90(6) 0.48(2)
0.95(5) 0.90(2)
aReferencesare given in parentheses: 1, Von Velsen-Zerweck (1999); 2, Huizinga (1991);
3, Brockmann (1999); 4, Schade (1996); 5, Gerber et al. (1996); 6, Van Veldhuizen (1997).
Concluding remarks
The genetic analyses of performance data of sport horses show that the vari-
ables measured in the stallions’ test at station are highly heritable and highly
correlated with the corresponding variables in competitions. The variables
measured in the 1-day field test of mares show similar, but lower results. On
the other hand, variables describing the performance in competitions have
generally low heritabilities. Model calculations were done to optimize breed-
ing programmes in sport horses, also considering artificial insemination as a
common technique in horses (Koerhuis et al., 1994; Bruns and Schade, 1998;
Brockmann, 1999). Genetic progress in sport horse breeding can be increased
when selection is based on multiple-trait genetic evaluations of stallions and
mares and carried out at sequential steps combining information from the tests
of stallions and mares and competitions. Such integrated systems of genetic
evaluation of sport horses as shown by Von Velsen-Zerweck (1999) have great
prospects in horse breeding.
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