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395
CH07CH17-Sadowski ARI 3 May 2016 12:4
1. INTRODUCTION
The application of thermodynamics to biological reactions began in the 1930s with the study
of the role of the energy carrier adenosine triphosphate (ATP) in metabolism (1, 2). Based on
the knowledge acquired, biochemical researchers, especially the groups led by Goldberg (3–8)
and Alberty (9–13), embarked on thermodynamic research into biological reactions and their
reacting agents. These researchers and others (14, 15) aimed to understand metabolism by applying
thermodynamic principles.
Bioreactions are catalyzed by enzymes (either isolated enzymes or via whole-cell catalysis) and
often require an aqueous reaction environment. Enzymes and their corresponding reactions can be
classified into six major classes, as recommended by the International Union of Pure and Applied
Chemistry (IUPAC) (16). All six reaction types have already been the focus of thermodynamic
investigations by, for example, Goldberg, Tewari, and their colleagues, who considered each of
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the six major enzyme classes: oxidoreductases (17), transferases (18), hydrolases (19), lyases (20),
isomerases (21), and ligases (21).
Approximately 20 years ago, von Stockar & van der Wielen (22) applied thermodynamics to
the design and analysis of biotechnological processes, verifying its huge potential for designing
novel and sustainable processes for industrial biotechnology. This proof of concept established
a new awareness of how thermodynamic principles could be applied to biological processes, an
application that is known as biothermodynamics. Heijnen & Van Dijken (23) proposed a rela-
tionship between biomass yield and thermodynamic properties that has been applied to predict
biomass yield (24) and maintenance coefficients (25). Further applications of the use of biothermo-
dynamic tools include estimating maximum growth rates, analyzing bioprocess kinetics by means
of nonequilibrium thermodynamics, and predicting metabolic networks (26–28). A prominent
example for a metabolic pathway is the analysis of glycolysis, which is of particular interest in
biochemical research (29).
This review summarizes the basic properties of, and the relationships applied in, biothermody-
namics, as well as state-of-the-art approaches used to describe the influence of temperature, pH,
electrolytes, solvents, and the concentrations of the reaction agents on reaction equilibrium and,
thus, on the feasibility and yield of biological reactions. However, the influence of these system
properties on enzyme activity, stability, and kinetics is not the focus of this review.
where R and T are, respectively, the universal gas constant and the reaction temperature. The
a i values are the thermodynamic activities of the species i that participate in the reaction ac-
cording to their stoichiometric coefficient νi . The standard Gibbs energy of reaction, R g 0 (see
Section 3), depends only on temperature. The thermodynamic activities of the reacting agents
depend on temperature, concentration, and the activity coefficients of the reacting agents (see
Section 4).
pH 7.0
42 pH 7.5
pH 8.0
–ΔRg0 (kJ/mol) 39
36
33
30
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27
20 24 28 32 36 40
T (°C)
Figure 1
Published standard Gibbs energies of reactions for ATP hydrolysis at different temperatures and pH values
(37–46).
By using Equation 1, tools from biochemistry, such as thermodynamic feasibility analysis, have
been applied to calculations for metabolic networks (26, 27, 30, 31). Mavrovouniotis (27) and
Vojinovic & von Stockar (32), as well as Maskow & von Stockar (33), analyzed glycolysis using
experimental nonequilibrium concentrations of the reacting agents and R g 0 data, which were
available from a previous study (34). They found that although there is no doubt that glycolysis
occurs, unreasonable concentrations of reacting agents had to be assumed to obtain a negative
value for R g. Although why this is so appears to be a mystery, it implies that the application of
thermodynamics to biological reactions is straightforward yet difficult, and requires careful and
thermodynamically correct analysis of the data.
Contradictory observations, such as positive R g data for obviously spontaneous reactions,
are usually assumed to be caused by experimental uncertainties (35). Additionally, however, using
the concentrations of reacting agents instead of their thermodynamic activities in Equation 1 and
applying available R g 0 data requires critical analysis (see Sections 3.3 and 6).
As an example, Figure 1 summarizes the R g 0 values for ATP hydrolysis found in the literature.
Obviously, there is a huge scatter in these R g 0 values. Data differ by up to 25%, even at a constant
temperature. As ATP hydrolysis is a key biochemical reaction and usually occurs simultaneously
with other reactions, the choice of its R g 0 value also influences the conclusions drawn for many
associated reactions (36).
Thus, to avoid confusion and even misleading conclusions, it is important to keep in mind that
published R g 0 values are usually not obtained at standard conditions and can, therefore, not be
directly used in Equation 1. Published R g 0 values have been obtained by different authors under
different conditions, which are sometimes not precisely detailed, and this explains the scatter of
data in Figure 1. Thus, R g 0 values must be carefully analyzed or recalculated, or both, before
use. This is discussed in Section 3.
In addition to inconsistencies in R g 0 values, the application of Equation 1 requires using
the thermodynamic activities of the reacting agents. These are obtained as the product of the
concentrations of the reacting agents and their activity coefficients (see Section 4). In summary,
R g and the equilibrium of a bioreaction are influenced by temperature, pH, the presence of
electrolytes and solvents, and the concentrations of all reacting agents. These properties must
be considered when performing thermodynamic feasibility studies of bioreactions. This review
discusses the basic ideas of, and existing approaches to, studying bioreactions.
Two standard states are commonly used for the reacting agents: the standard-state pure com-
ponent and the standard-state hypothetical ideal solution. The first is usually applied to chemical
reactions and is rarely used for bioreactions (30, 31). As most biological reactions are performed
at low concentrations of reacting agents, their thermodynamic behavior is quite different from the
pure-component standard state. This usually makes the pure-component standard state unfeasible
in these cases. Therefore, the preferred standard state for the reacting agents in a bioreaction is a
solution of 1 mol reacting agent in 1 kg of water, assuming the interactions between the molecules
are the same as in an infinitely diluted solution (this is referred to as the hypothetical ideal solution)
(37–48).
The standard state can be chosen separately for each reacting agent and does not necessarily
need to be the same for all reacting agents of a reaction. This applies to reactions in which one
of the reacting agents is also used as solvent (for example, water) and is, therefore, present in
much higher concentrations than the other agents. The case in which a reacting agent acts as a
solvent is preferably described as the pure-component standard state, whereas the hypothetical
ideal solution is chosen as the standard state for the diluted reacting agents (48, 49).
in which νi is the stoichiometric coefficient of the reacting agents in the reaction. The standard
Gibbs energy of formation of a species i, F gi0 , is the Gibbs energy change for a reaction that
exclusively forms 1 mol of the species from its elements. F gi0 refers to the pure species and, thus,
depends only on temperature.
F gi0 values are not directly accessible and are usually obtained using enthalpies of forma-
tion, F h i0 , which can be measured or determined from combustion enthalpies, and entropies of
formation, F s i0 , obtained from heat capacities measured at low temperatures or from quantum
chemistry (50, 51) according to (52)
F gi0 = F h i0 − T F s i0 . 3.
Enthalpies of formation of biological compounds have been extensively determined since the
beginning of the past century, mainly by heat-of-combustion measurements of pure compounds,
such as glucose (53–55), fructose (56), pyruvic acid (57), dihydroxyacetone (58), or glyceraldehyde
(59).
Quantum chemistry–based methods have already been applied to predict standard Gibbs en-
ergies of metabolic reactions and thermodynamic gas-phase properties of biological compounds
(for example, see References 60, 61).
R g 0 = −RT ln(K a ). 4.
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As g depends on the choice of the standard state (see Section 3.1), K a must be chosen accord-
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R 0
ingly. If the hypothetical ideal solution is chosen as the standard state for all reacting agents, the
equilibrium constant K a also refers to that standard state. Thus, it is obtained by
∗ν ν ∗ν
Ka = ai i = mi i · γm,ii = K m · K γ ∗ . 5.
K a is defined as the product of the rational activities a i∗ (= mi · γ∗m,i ) of each reacting agent expo-
nentiated with its stoichiometric coefficient, and it can also be expressed as the product of K m and
K γ ∗ , which represent, respectively, the ratio of molalities, mi , and the ratio of rational activity
coefficients, γ∗m,i , being 1 at infinite dilution.
In this case, R g 0 is obtained, according to Equation 4, from Equation 6:
R g 0 = −RT ln K m − RT ln K γ∗ . 6.
Often the apparent Gibbs energy of reaction, R g 0,app , is used in the literature (34) instead of the
true standard value, R g 0 . In this case, apparent means that this property is directly determined
from measured equilibrium molalities, which are used to calculate K m . The apparent and the true
Gibbs energies of reactions are related by
R g 0,app = −RT ln (K m ) = R g 0 + RT ln K γ ∗ . 7.
In contrast to R g 0 , the apparent property, R g 0,app , depends on the activity coefficients of the
reacting agents and, therefore, also on the concentrations of reacting agents and on the reaction
medium (solvent, additives). This also explains the scatter of R g 0 data in Figure 1. Although
usually called the standard Gibbs energies of reaction, most published values obviously are R g 0,app
values determined under different conditions.
If the pure-component standard state is used for all reacting agents in a reaction, K a must be
determined from the mole fractions, xi , and the generic activity coefficients of the reacting species,
γi , which are 1 for the pure-component state. To avoid confusion with K a from Equation 5, some
researchers (30, 31) have renamed the equilibrium constant K th . Using xi · γi = mi · γm,i , mole
fractions can be replaced by molalities, which can then be used as concentration units:
ν ν ν
K th = ai i = mi i · γm,i
i
= Km · Kγ . 8.
Unfortunately, many research groups do not use subscripts with the equilibrium constant K. In
these cases, the reader knows neither the considered standard state nor the concentration unit used
to obtain the K values; hence, these values should be used cautiously for further investigations.
As R g 0 depends only on temperature, according to Equation 4, the activity-based equilibrium
constants K a and K th also depend only on temperature. In contrast, both K m and K γ (or K γ ∗ )
depend on the reaction medium (solvent, cosolvents, additives, pH) and the concentration of
reacting agents. According to Equations 5 and 8, K a and K th values are accessible using measured
∗
equilibrium molalities (→ K m ) and the activity coefficients of the reacting agents, γi,m or γi,m .
The latter depend on the concentrations of the reacting agents and the system composition and
must be estimated using a thermodynamic model (30, 31, 47, 48). For an infinite dilution of all
reacting agents, K γ ∗ becomes truly 1. In these cases, experimental K m values measured at different
molalities of reacting agents can be extrapolated to 0 molality of all reacting agents, leading to K a
(48). Often (for example, all references in 34, 62), however, K γ ∗ in Equation 5 is assumed to be
1 irrespective of the concentrations of the reacting agents and also in cases in which at least one
of the reacting agents (if not all) are not highly diluted. Consequently, this leads to inaccurate K a
values and, therefore, to inaccuracies in R g 0 . The same is true if K γ is neglected in Equation 8.
R g 0 , determined from K th via Equation 8, is also related to the Gibbs energies of formation,
Annu. Rev. Chem. Biomol. Eng. 2016.7:395-414. Downloaded from www.annualreviews.org
obtained from the respective properties of the reacting species ∞ gi0 , which are the Gibbs energies
of species i in a 1 molal aqueous solution exhibiting the same interactions as in the infinitely diluted
state,
R g 0 = νi · ∞ gi0 . 9.
In turn, the species properties ∞ gi0 , which are hardly accessible directly, can be obtained from
Equation 9, once R g 0 is known for a set of reactions related to a number of species forming a
system of a certain number of equations and the same number of unknowns, ∞ gi0 . The obtained
∞ gi0 values are tabulated for many biological compounds, especially in the National Bureau of
Standards tables (63) or in Thermodynamics of Biochemical Reactions by Alberty (34). (It is worth
mentioning that the species properties ∞ gi0 are, of course, different from F gi0 . Nevertheless,
∞ gi0 is often also called the Gibbs energy of formation.) Based on these data, group-contribution
methods (64, 65) have been developed for calculating ∞ gi0 , which can now be used to determine
the standard Gibbs energies of metabolic reactions.
The fugacity coefficient ϕi of component i in a mixture and the fugacity coefficient of the pure
component ϕ0i in Equation 10 can be calculated using an equation of state, such as Perturbed-
Chain Statistical Associating Fluid Theory (PC-SAFT) (66, 67). Moreover, GE models, such as
UNIQUAC Functional-Group Activity Coefficients (UNIFAC) (68, 69), Conductor like Screen-
ing Model for Realistic Solvents (COSMO-RS) (70, 71), and the nonrandom two-liquid model
(72), have already been used to calculate the activity coefficients of reacting agents in biological
reactions (31, 73, 74). The generic activity coefficient of a reacting agent in a solvent is also
accessible experimentally from solubility data of the reacting agent (see Section 5).
The so-called rational activity coefficient, γi∗ , is related to the generic activity coefficient by
the generic activity coefficient at infinite dilution, γi∞ = γi (xi → 0):
γi
γi∗ = . 12.
γi∞
γi∗ can thus be obtained based on Equation 12 by applying the models already mentioned for
calculating the generic activity coefficient.
version is equilibrium-limited. The yield of these reactions can be enhanced by increasing the
substrate concentration. However, this increase is limited by the solubility of the substrates in
the reaction media. Thus, the solubility of a reacting agent in the reaction medium is an impor-
tant property, especially as many reacting agents have very poor solubility in water [for example,
acetophenone (75) or oligopeptides (76)] or in organic solvents [for example, amino acids (77)].
Substrate solubility may also be influenced by additives present in the reaction medium (for
example, electrolytes, cosolvents) (78, 79). Ionic liquids have recently been proposed to serve
as solvents or cosolvents in reaction media (80–82). Dreyer & Kragl (75) have shown that the
solubility of acetophenone increases exponentially upon addition of the ionic liquid Ammoeng
110 (IoLiTec Ionic Liquids Technologies GmbH, Germany). Swatloski et al. (83) demonstrated
the huge influence of ionic liquids on the solubility of cellulose in water.
Solubility data are important not only for the obvious information that they offer but because
knowledge of the solubility of a reacting agent also provides access to the generic activity coef-
ficient of that reacting agent in a solvent. The solubility of a component i in mole fraction xi
can be calculated from the equilibrium condition between the liquid and the solid phase (52)
(Equation 13):
1 h SL T
xiL = · exp − 0i 1 − SL , 13.
γi RT T 0i
where h SL SL
0i and T 0i are, respectively, the enthalpy of melting and the melting temperature of the
pure component i. This relation assumes a pure solid phase and neglects the difference between
the solid and liquid heat capacities of component i. The melting properties are usually accessible
from calorimetric measurements (84) or group-contribution methods (85).
Because solubility is a function of solvent, temperature, pH, and additives, thermodynamic
models that are able to account for these influences become increasingly important. Numerous
thermodynamic models have been applied to describe the solubility of biomolecules by using
Equation 13, and these have been reviewed by Khoshkbarchi & Vera (86). In the past decade,
PC-SAFT has been applied to model the solubilities and activity coefficients of amino acids (87),
compatible solutes (88, 89), and sugars (90) in aqueous solutions, in multi-solvent systems (91,
92), and even in multi-solute systems (87, 88, 90, 93–97). Zeuner et al. (73) applied COSMO-RS
to model the solubility of methyl ferulate in different solvents and solvent mixtures. Other studies
have shown that thermodynamic models are, to a certain extent, able to predict the influences
(solvent, temperature, pH, and additives) on the solubility of biomolecules (51, 84, 98, 99, 100).
As an example, Figure 2 compares the capabilities of COSMO-RS and PC-SAFT to predict
the solubility of methyl ferulate in a mixture of ethyl acetate and an ionic liquid ([bmim][BF4 ] or
[omim][BF4 ]). In this case, prediction means that the experimental solubilities have not been used
COSMO-RS predictions
PC-SAFT predictions
0.4 Experimental data
0.3
xMFA(–)
0.2
0.1
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0.0
[bmim] [BF4] [omim] [BF4]
Figure 2
Solubility of methyl ferulate (MFA) in an equimolar mixture of ethyl acetate and the ionic liquid
[bmim][BF4 ] or [omim][BF4 ] at 303.15 K and 1 bar. Experimental data from Reference 101; COSMO-RS
predictions taken from Reference 73. The pure-component PC-SAFT parameters were taken from the
literature (47, 67, 102, 103) without fitting any binary parameters to the solubility data shown in this figure.
Abbreviation: MFA, methyl ferulate.
to parameterize the two models. The results obtained with COSMO-RS are in fair agreement
with predictions of the solubility of methyl ferulate in the two solvent mixtures. In contrast, the
application of PC-SAFT allows for almost quantitative prediction of the solubility of methyl
ferulate in the two solvent mixtures. Thus, the solubility of reacting agents in different reaction
media is accessible by using thermodynamic models. These models are also able to account for
the effects of temperature, pH, and solvent on the solubility of reacting agents.
6. BIOREACTION EQUILIBRIA
–1.50
–1.25
ln(Ka) (–)
–1.00
–0.75
3.20 3.25 3.30 3.35 3.40
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Figure 3
Equilibrium constants K a versus the reciprocal absolute temperature of glucose-6-phosphate isomerization,
taken from Hoffmann et al. (48). The slope of the line equals −R h 0 /R, yielding the enthalpy of reaction,
which was determined to be 12.25 ± 0.3 kJ/mol.
6.2. Influence of pH
The thermodynamic properties of a system may change dramatically with changes in pH. The main
reason for this is the possible dissociation of reacting agents resulting in a change in concentration
of neutral or ionized species upon changes in pH, even at a constant total concentration of a
reacting agent; this is called the pH-dependent species distribution of the reacting agent. The
more functional acidic or basic groups a reacting agent has, the higher the species diversity as
a function of pH. This dissociation behavior is usually described by dissociation constants and,
moreover, depends on temperature.
Dissociation constants of biomolecules can be found in the literature (109), allowing for the
prediction of species distribution (110). The concentration of a reacting agent in a biochemical
system is usually described as the sum of its species’ concentrations, leading to apparent K m
values (111). A change in a solution’s pH causes a change in the species contributing to R g 0 or
K m . Therefore, measured K m values apparently depend on pH (see, for example, Figure 1 for
ATP hydrolysis). As pH might strongly influence the equilibrium of enzyme-catalyzed reactions,
reaction media are usually buffered, or acids or bases are used, to keep pH constant during the
reaction.
Hoffmann et al. (47, 48) and Goldberg et al. (49) measured the influence of pH on different
bioreactions. They found that even small changes in pH strongly influenced the K m values of
methyl ferulate hydrolysis (47, 49). In that reaction, the substrate methyl ferulate is an ester,
whereas the product is an acid (ferulic acid). Hence, pH changes do not influence the species
distribution of the reactant, but they strongly influence the species distribution of the product. This
explains the strong change in apparent K m values occurring with pH in methyl ferulate hydrolysis.
In contrast, Hoffmann et al. (48) observed that apparent K m values for G6P isomerization did not
change with pH variation. They stated that this was caused by the similar dissociation constants
of the reactant (G6P) and the product (F6P), which led to similar changes in species distributions
upon pH change.
Because the influence of pH on K m values is caused mainly by the ratio of charged to neutral
species of a reacting agent, several research groups have developed equations that relate Gibbs
energies to dissociation constants to describe the effects of pH on reactions. Alberty (34) proposed
an approach that describes the change in ∞ gi0 (which he called Gibbs energies of formation;
see Section 3.3) upon pH variation based on dissociation constants of the reacting agents and the
solution’s pH. Similarly, Alberty (34) also developed a correlation for the pH dependence of the
apparent standard Gibbs energy of a reaction, R g 0,app (Equation 9), which neglects the activity
coefficients of the reacting agents (see Equation 7). He proposed the use of so-called binding
Annu. Rev. Chem. Biomol. Eng. 2016.7:395-414. Downloaded from www.annualreviews.org
polynomials, Pi , which are defined as the ratio of the total concentration, c itot , of a reacting agent
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species
i and the concentrations of its species formed by a dissociation reaction j (Pi = c itot /c i, j ).
Calculating this ratio requires the dissociation constants of the reacting agents (34). The final
expression for K m is then obtained as
(Pi )νi
K m (pH) = K m (pH = 7) · . 15.
i
([H+ ])νi
To demonstrate the applicability of Equation 15, it is applied here to the methyl ferulate hydrolysis
experimentally investigated by Hoffmann et al. (47). Use of the experimental K m value of Hoffmann
et al. at pH 7 [K m (pH = 7) ≈ 62] in Equation 15 results in pH-dependent K m values, as illustrated
in Figure 4. As can be observed, the correlation in Equation 15 shows that the K m values of methyl
ferulate hydrolysis between pH 6 and pH 7 are in qualitative agreement with the experimental
data. This is a surprisingly good result considering that Alberty’s (34) correlation requires only
the dissociation constants of all reacting agents, the solution pH, and one experimental K m value.
Thus, K m values may strongly depend on pH, irrespective of the concentrations of the reacting
agents or of temperature. To calculate the influence of pH on K m , it is recommended that existing
correlations that use the dissociation constants of the reacting agents be applied.
70
60
50
40
Km (–)
30
20
10
0
6.0 6.2 6.4 6.6 6.8 7.0
pH
Figure 4
K m values of methyl ferulate hydrolysis at 298.15 K in phosphate buffer as a function of pH at
mmethyl ferulate, init = 6 mmol/kg. Circles are experimental data taken from Hoffmann et al. (47). The solid
black line represents an exponential regression of the experimental K m values. The green dashed line
represents the pH correlation according to Equation 15, using K m at pH 7 as an input.
PC-SAFT predictions
Equation 18 calculation
Experimental values
200
Km (–)
100
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0
0.0 0.2 0.4 0.6 0.8 1.0
mNaCl(mol/kg)
Figure 5
K m values of methyl ferulate hydrolysis at 298.15 K and mmethyl ferulate, init = 6 mmol/kg as a function of
NaCl molality. Circles: experimental values (47); solid black line: prediction using electrolyte PC-SAFT
(47); green dashed line: calculation using Equation 18.
1.0
0.8
K(–) 0.6
0.4
0.2
0 5 10 15 20 25 30 35
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eq
mG6P(mmol/kg)
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Figure 6
K values for the isomerization of glucose-6-phosphate (G6P) as a function of G6P equilibrium molality at
pH 8.5 and T = 310.15 K. Experimental K m values (circles) and experimentally derived Kγ ∗ values (triangles)
were taken from Reference 48. K a , as derived from Equation 5, is represented as a black dashed line. The
green solid line represents electrolyte PC-SAFT-predicted K γ ∗ values, also taken from Reference 48.
Hoffmann et al. (48) applied ePC-SAFT to predict the K γ ∗ for that reaction. They achieved very
good agreement between the predicted and experimental K γ ∗ values, deviating by less than 2%
(also shown in Figure 6). This is considered an excellent result because ePC-SAFT was used solely
to predict the activity coefficients, and reaction-equilibrium data were not used to fit ePC-SAFT
model parameters.
In conclusion, it has been shown that K m values may strongly depend on concentration, even
at low concentrations of the reacting agents. This is caused by the non-one ratio of the activity
coefficients of reacting agents. Thus, neglecting the concentration dependence of K m by assuming
K γ ∗ to be 1 might result in incorrect K m values and the misinterpretation of data and, consequently,
in erroneous R g 0 values obtained from Equation 6.
1,600 n-Hexane
1,000
a n-Heptane
Cyclohexane
b
2,2,4-Trimethylpentane 800
1,200
Toluene
600
Kth(–) 800 Kth(–)
400
400
200
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0 0
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Figure 7
K th values predicted for esterification reactions in different solvents using COSMO-RS, UNIFAC, and PC-SAFT. (a) Esterification of
(−)-menthol with lauric acid; (b) esterification of 1-dodecanol with lauric acid. Data for COSMO-RS and UNIFAC were taken from
Fermeglia et al. (31), and PC-SAFT parameters can be provided on request.
mole fraction–based K x by a factor of 32. Using toluene and benzene as solvents also increased
K x values, but to a much smaller extent than acetonitrile did.
Accounting for the activity coefficients of the reacting agents in the different solvents is the
key to predicting K a and, as a result, K m values and reaction yields in these solvents. Activity
coefficients can be obtained from thermodynamic models. For bioreactions, PC-SAFT, UNIFAC,
and COSMO-RS have primarily been applied (31, 47, 74). Hoffmann et al. (47) used PC-SAFT
to predict K γ ∗ values for enzyme-catalyzed hydrolysis. They showed that the application of PC-
SAFT is suitable for predicting the activity coefficients of the reacting agents and for modeling the
solvent’s influence on K m values. In other studies, COSMO-RS and UNIFAC (31, 74) have been
used to model the K th values of enzyme-catalyzed esterifications in different organic solvents. It
has been found that UNIFAC fails to predict the solvent’s influence on the activity coefficients
of the reacting agents, whereas COSMO-RS is considered to be an appropriate model for that
purpose.
To illustrate the suitability of thermodynamic models for predicting a solvent’s influence on
bioreactions, PC-SAFT, UNIFAC, and COSMO-RS were applied to predict the K γ values and,
from those, the K th of two esterification reactions in various organic solvents. Figure 7 compares
the K th values for the esterification of (−)-menthol with lauric acid (Figure 7a) and the esterifica-
tion of 1-dodecanol with lauric acid (Figure 7b). The K th values were obtained by using Equation
8 with experimental K m values from the literature (118, 119). As the equilibrium constant K th
should not depend on the solvent, the quality of the predictions can be judged by comparing the
K th values predicted for reactions in different solvents. It becomes obvious from Figure 7 that the
application of UNIFAC causes very high K th values compared with the predictions made using
COSMO-RS and PC-SAFT. Furthermore, the UNIFAC-predicted K th values in different sol-
vents deviated, on average, by 41% (Figure 7a) and 32% (Figure 7b), whereas substantially lower
deviations were found by using COSMO-RS (Figure 7a, 34%; Figure 7b, 17%) or PC-SAFT
(Figure 7a, 27%; Figure 7b, 9%). In conclusion, K m values strongly depend on the presence of
solvents in the reaction medium. State-of-the-art thermodynamic models allow for prediction of
the influence of the solvent on reaction equilibria and, from that, the prediction of the reaction
yield in various solvents.
7. CONCLUSIONS
The application of thermodynamic principles to biological reactions allows for the prediction of
yields and identification of reactions that may cause bottlenecks in metabolic networks. However,
applying these principles requires profound knowledge of thermodynamic properties, in particular
of the standard Gibbs energy of reaction, R g 0 , and the thermodynamic activities of the reacting
agents.
Although R g 0 depends only on temperature, R g 0 data from different literature sources usu-
ally show a huge scatter, even at a constant temperature. This is particularly worrying because these
data are used extensively for analyses of metabolic pathways. To a certain extent, these deviations
can be explained by uncertainties in the experimentally determined concentrations of the reacting
agents, which are usually small and hard to measure. However, this is only part of the problem.
Another reason for the huge scatter probably is that the activity coefficients of the reacting
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agents are neglected when determining the R g 0 from equilibrium measurements of biological
reactions. The activity coefficients of reacting agents (as well as the K m values) depend on tem-
perature, on the concentrations of the reacting agents, on the presence of additives, and on the
solvent in which a reaction occurs. If this is not accounted for, these dependencies show up in the
R g 0 values.
The influence of temperature on biological reactions is usually quite small, as these reactions are
usually performed over a narrow temperature range. Furthermore, K m values strongly depend on
pH if the dissociation constants of the reactant(s) and product(s) differ significantly. Correlations
that use the dissociation constants of the reacting agents reliably predict the influence of pH on
Km.
In contrast, the influence of electrolytes on K m values is not very pronounced. Correlations for
calculating the influence of ionic strength on K m often overestimate this effect. Moreover, they
usually account only for ionic strength rather than for the nature of the ions actually present in
the reaction medium. Thus, it is recommended that either measurements or more sophisticated
electrolyte models be used to determine the influence of electrolytes on K m .
K m values strongly depend on the reacting agents’ concentrations and on the presence of
organic solvents in the reaction medium, due to the activity coefficients of the reacting agents.
State-of-the-art thermodynamic models now allow for estimates of these activity coefficients and,
from those, provide very good predictions of K m as a function of reacting agents’ concentrations
and solvent media (given reliable R g 0 values).
As for chemical reactions and phase equilibria, the application of thermodynamics to biological
reactions is straightforward. However, biological systems are usually more complex, as they contain
many different species, and the reacting agents often show a species distribution that varies as a
function of pH. This requires careful data analysis using state-of-the-art models to account for
a system’s nonidealities. If applied properly, thermodynamics is a powerful tool for assessing
biological reactions and evaluating the influence of a system’s properties on these reactions.
DISCLOSURE STATEMENT
The authors are not aware of any affiliations, memberships, funding, or financial holdings that
might be perceived as affecting the objectivity of this review.
ACKNOWLEDGMENT
The authors thank Peter Halling for inspiring discussions.
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Annual Review of
Chemical and
Biomolecular
Engineering
vii
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Membranes
Santosh Mogurampelly, Oleg Borodin, and Venkat Ganesan p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 349
Polymer Thin Films and Surface Modification by Chemical Vapor
Deposition: Recent Progress
Nan Chen, Do Han Kim, Peter Kovacik, Hossein Sojoudi, Minghui Wang,
and Karen K. Gleason p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 373
Thermodynamics of Bioreactions
Christoph Held and Gabriele Sadowski p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 395
Complex Fluids and Hydraulic Fracturing
Alexander C. Barbati, Jean Desroches, Agathe Robisson, and Gareth H. McKinley p p p p 415
Biomanufacturing of Therapeutic Cells: State of the Art, Current
Challenges, and Future Perspectives
Kyung-Ho Roh, Robert M. Nerem, and Krishnendu Roy p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 455
Polymer Fluid Dynamics: Continuum and Molecular Approaches
R.B. Bird and A.J. Giacomin p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 479
Progress in the Development of Oxygen Reduction Reaction Catalysts for
Low-Temperature Fuel Cells
Dongguo Li, Haifeng Lv, Yijin Kang, Nenad M. Markovic,
and Vojislav R. Stamenkovic p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 509
The Carbon-Water Interface: Modeling Challenges and Opportunities
for the Water-Energy Nexus
Alberto Striolo, Angelos Michaelides, and Laurent Joly p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 533
New Vistas in Chemical Product and Process Design
Lei Zhang, Deenesh K. Babi, and Rafiqul Gani p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 557
Advances in Nanoimprint Lithography
Matthew C. Traub, Whitney Longsine, and Van N. Truskett p p p p p p p p p p p p p p p p p p p p p p p p p p p 583
viii Contents
CH07-FrontMatter ARI 14 May 2016 8:27
Indexes
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Errata
Contents ix