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Article history: Acute exacerbation of chronic obstructive pulmonary disease (AECOPD) is a major event in the natural
Received 16 June 2012 course of the disease, and is associated with significant mortality and socioeconomic impact. Abnormal
Accepted 27 March 2013 respiratory sounds are commonly present in patients with AECOPD. Computerized analysis of these
sounds can assist in diagnosis and in evaluation during follow-up. Exploratory data analysis methods
Keywords: were applied to respiratory sounds in these patients when they were hospitalized because of
COPD exacerbation. Two different patterns of presentation and evolution of respiratory sounds in AECOPD
Respiratory sounds were found and described from the method of computerized respiratory sound analysis and unsuper-
Exacerbation vised clustering that was devised. Based on the findings of the study, remote monitoring of respiratory
Signal processing
sounds may be useful for the detection and/or follow-up of COPD exacerbation.
Clustering
& 2013 Elsevier Ltd. All rights reserved.
0010-4825/$ - see front matter & 2013 Elsevier Ltd. All rights reserved.
http://dx.doi.org/10.1016/j.compbiomed.2013.03.011
D. Sánchez Morillo et al. / Computers in Biology and Medicine 43 (2013) 914–921 915
analysis of relative differences in respiratory sound intensity has 8000 Hz. Analog to digital conversion was performed with 16-bit
been recently reported to be potentially useful in distinguishing quantization. Both clinical history and sound files were assigned to
acute dyspnea caused by congestive heart failure (CHF), COPD or a codified electronic patient record, especially designed for hospi-
asthma during acute exacerbations [10]. To our knowledge, there talized COPD patients monitoring.
are no significant studies that have examined the evolution of All recordings were made in bed, in a semi-recumbent position
respiratory sounds in patients hospitalized for AECOPD during the (elevation of head of bed of 45 degrees). The first recording was
period of hospital stay in order to generate clinical and diagnostic performed within the first 24-h of admission and the last one on
applications. the day of discharge. At least three complete breathing cycles were
The aim of this work is to examine respiratory sounds in recorded after instructing the patients to breathe as deep as
patients with COPD hospitalized for AECOPD and find substantial possible. Recordings with background voice and/or high environ-
differences in the sounds evolutionary behaviour that may allow mental noise were discarded.
the establishment of exacerbation typologies with possible clinical
implications. Therefore, the purpose of this study is to provide an 2.2.2. Auscultation emplacement
answer to the hypothesis that a computerized system can detect
changes in respiratory sounds during COPD exacerbations and that A close relation between airflow and tracheal respiratory
these changes are consistent with those assessed by physicians, sounds spectrum has been reported [11]. The interest in tracheal
thereby aiding in the detection of AECOPD. sounds as possible indicators of airway obstruction has been
documented [12]. The trachea has been proposed as a better
location than the lung for analysing wheezes [13]. In fact, previous
2. Methods and materials studies [14] have pointed out that lung tissues absorb high
frequency components. Additionally, the spectral pattern of tra-
2.1. Subjects cheal sounds is stable with low intra-subject variability [15]. When
compared to the thorax, the trachea is an easily accessible skin
A group of patients hospitalized due to AECOPD in the surface and has lower noise interference caused by hair and
Pulmonology and Allergy Unit of the University Hospital Puerta clothes, but it poses some drawbacks in children and some
del Mar of Cádiz (Spain) were followed during their hospital stay. short-neck adults.
An intentional, non-probabilistic sample of 53 individuals was
studied. Because the recruited participants had mild to very severe 2.2.3. Other clinical variables
airflow limitation, they represented a broad spectrum of COPD
patients. Respiratory sounds were recorded from admission to Demographic and clinical data of the participants were col-
discharge. The hospital's research ethics committee approved the lected from the patients' clinical history or by face-to-face inter-
project, and signed informed consent was obtained from all view during their hospital stay. Data included age, gender, weight,
patients before enrolment. height, body mass index (BMI), smoking habits (pack-years),
Inclusion criteria were as follows: (a) a history of COPD and a smoking history (current smoker, non-smoker or ex-smoker),
ratio of forced expiratory volume in one second (FEV1) to forced COPD severity stage according to GOLD and coexisting chronic
vital capacity (FVC) less than 0.7 in a stable phase of disease; (b) respiratory insufficiency (CRI). Predicted values of FEV1 were
patients admitted for AECOPD. The only exclusion criterion was calculated in accordance with accepted Spanish population values
the presence of any cognitive impairment that prevented active [16]. Furthermore, on each admission, a chest radiograph of the
participation in the study. patient while in the emergency unit was obtained. Coexisting
pneumonia was assessed by a senior pulmonologist. Finally, the
respiratory sounds evolution (RSE) during hospitalization was
2.2. Data collection annotated. Two senior specialists studied each case independently
and classified each patient.
2.2.1. Sounds recording In order to facilitate the aforementioned task, a sensor and an
electronic stethoscope (Thinklabs ds32a) were used concurrently
Sounds were recorded with an electret microphone with to allow sounds recording in ten locations on the anterior, side and
coupling chamber and flat response between 50 and 18.000 Hz. posterior chest. Spectrogram of every recording was also provided
Electronics was embedded in a special housing tailored for self-use as an additional resource. A dichotomous classification was estab-
(Fig. 1). Sensor was placed over the trachea on the suprasternal lished based on each case. The first group of patients, referred to as
notch and handled by the patients themselves. Sampling rate was RSE-G1, included patients with absence of abnormal sounds and
and clustering were also applied, and Matlabs was used for signal
processing.
environment microphone and an estimated heart signal. The
objective was to enhance noise suppression.
2.4. Selection of features STFT for each filtered auscultation was then calculated. Each
sound signal was divided into 25% overlapping segments of 64 ms
Changes in respiratory sounds caused by diverse respiratory (Hamming window, 512 samples). The spectral content between
disorders are reflected in a spectral content displacement from the cut-off frequencies f1 ¼ 100 Hz and f2 ¼ 2000 Hz was selected
some frequency bands to others [9]. Consequently, spectral con- and the power spectral density (PSD) was normalized to a scale
tent needs to be quantified. As lung sounds are non-stationary from 0 to 1. Finally, changes of each spectral feature were captured
signals, conventional methods of frequency analysis are not by the average and standard deviation of the one-value
recommended. In order to accurately characterize the spectral per segment series. Therefore, 26 features were extracted from
time varying properties, it is necessary to use non-stationary the admission and discharge recordings. The difference between
signal analysis techniques. Analysis of non-stationary signals the discharge values and the admission ones was calculated for
including sounds has been mainly carried out using short-time each patient and used in further steps.
Fourier transform (STFT) and wavelet transforms. STFT and wave-
lets provide means of analysing signals simultaneously in both
time and frequency domain. In this work, STFT was used for 2.6. Dimensionality reduction and exploratory data analysis
respiratory sounds analysis. Features extracted from STFT can yield
physiologically meaningful information, helpful for results inter- Explorative data analysis techniques and unsupervised cluster-
pretation. Furthermore, the proposed features, derived from STFT ing methods were applied in order to study the resulting dataset
have been successfully applied in the analysis of respiratory built from the 53 COPD patients. Due to the difficulty in under-
sounds in COPD patients [17]. Thirteen features were selected standing the underlying information of such a complex data
and computed. They provided a priori useful information for the model, and to learn about its multidimensional structure and the
purpose of this study. Mean and standard deviation of each of the potential existence of subsets of patients with observable differ-
spectral parameters were calculated to quantify the characteristics ences in clinical practice, the interrelationships among the attri-
of respiratory sounds, as displayed in Table 1. butes were evaluated by applying a data-driven approach. Rather
than using statistical methods for classical hypothesis testing,
2.5. Features estimation exploratory data analysis (EDA) tools were used [19]. Multivariate
statistical theory and cluster analysis were applied to discard
Much of the tracheal sounds spectral energy is located in the imposition of an a priori structure [20].
band from 100 to 1200 Hz, although some abnormal sounds may As a first approach to visual inspection of the data, the study of
present higher frequency content [13]. As heart sounds spectrum hidden structures and dimensionality reduction were performed
is concentrated below 100 Hz, intelligent reduction of the without a priori hypotheses through PCA. The main goal was to
unwanted heart components is essential. To prevent aliasing and assess the presence of separated clusters. PCA was applied to the
to reduce the influence of heart, noise and muscle sounds, sound features dataset. The results allowed reducing the space dimen-
signals were band-pass filtered after removal of the DC compo- sions. Second, a fuzzy C-means algorithm was used for unsuper-
nents by using an equirriple band-pass finite impulse response vised clustering to characterize the subgroups observed. Finally,
filter (FIR) from 100 to 2000 Hz with 80 dBs of attenuation out of the observed clusters were compared against variables like FEV1,
the band-pass. coexistent CRI and pneumonia, BMI, pack-years and RSE. The
A recursive least squares (RLS) adaptive filter [18] was used objective was to verify possible correspondences between the
to adaptively filter the respiratory signal by using a second results and the clinical evidence.
D. Sánchez Morillo et al. / Computers in Biology and Medicine 43 (2013) 914–921 917
2.6.1. Principal component analysis 90% of the sample variance, and the first two for more than 83%.
In order to perform a better discriminating visual exploratory
Multidimensional data visualization is a typically challenging analysis, the first two components were considered for further
task in biomedical multivariate problems. Since our dataset was processing stages.
composed of a large number of variables operating in the same Biplots show inter-unit distances, variances and correlations of
domain, a high correlation between some of them was expected. It variables of datasets. They can be used to reveal clustering and to
was necessary to simplify the explorative analysis process by guide the interpretation of PCA [23]. A PCA biplot overlaps both
considering a smaller number of linear combinations among the the original variables vectors and a scatter plot of the transformed
original variables. Such dimensionality reduction can be achieved data. Fig. 2 shows the biplot related to the first two PCA
by PCA [21]. Therefore, linear combinations of the twenty six components (see Table 1 for details and labels). From the direc-
variables were used to build a new set of twenty six independent tions of the original variable vectors it is possible to derive a subset
components. The advantage of PCA is that the first few compo- of parameters with a better discriminating capacity. In particular,
nents explain most of the variance in the dataset. Consequently, Fig. 2 displays a set of features composed of uMNF, uMDF, dKU and
dimensionality of the original dataset can be reduced with mini- uKU along the two-cluster axis direction. The other parameters
mal loss of information. Voronoi density plots [22] and special seem not to be significant, either because they are orthogonal to
graphs called biplots [23] were then used to explore the data, by the possible cluster axis or because of their low modules. There-
displaying information on both new components and original fore, the aforementioned variables do not provide reliable infor-
variables and by allowing easy visual interpretation of the rela- mation for discriminating between the two clusters.
tionships among them. If the scatter plot of the transformed data is drawn using a color
scheme representing the data density, the presence of partially
2.6.2. Cluster analysis overlapping subgroups or clusters in the underlying data structure
is revealed. Fig. 3 shows the density plot computed using the
PCA-based cluster analysis was performed to search for groups Voronoi approach. Remarkably, the number of identified clusters
in data. Clustering is a main task of explorative data mining and is remained at two, as shown by the two high density structures that
widely used in bioinformatics and many other fields. Clustering is are clearly distinguishable.
an unsupervised strategy that allows automatic assigning of To sum up, the visual exploratory analysis of the functional
samples into relatively homogeneous groups. In this study, respiratory variables yielded the presence of a patient subgroup
fuzzy-C-means clustering (FCM) was used [24]. Because the (cluster I) characterized by lower values for uMNF and uMDF, and
number of clusters cannot be defined a priori, a good cluster simultaneous higher values for dKU and uKU. The analysis also
validity criterion has to be found. Cross-validation is an approach revealed a second subgroup characterized by higher values for
to estimate the number of clusters in the data. For cross-validation, uMNF and uMDF, and simultaneous lower values for dKU and uKU
data are split into two or more parts. One part is used for (cluster II).
clustering and the remaining parts are used for validation. How- Overlaid on Fig. 3 are the results of cluster analysis. Each point
ever, some authors have reported that cross-validation fails to corresponds to one patient. Two subgroups or clusters identified
identify the optimal number of clusters, particularly when the by applying FCM are visible in this space. The two clusters show
features are highly correlated [25], as it occurs in this study. In this slight overlaps. The values of the selected validity measures
work, the partition coefficient (PC), a measure of the fuzziness of depending on the number of clusters are plotted in Fig. 4. The
the partition, and partition entropy (PE), which provides informa- highest PC and the lowest PE values were obtained considering
tion about the membership matrix, were used for internal valida- two as the optimum number of clusters within the series of
tion [26]. patient’s data points. This estimation agreed with the exploratory
analysis performed through biplots and density plots.
The aim of the next steps in the analysis of data was to evaluate
3. Results the two clusters and the relationship between them and clinical
factors related to the condition like FEV1, CRI, GOLD stage and RSE
Patients' morphological, smoking and functional characteristics perceived by the pulmonologists. Statistical significance was
are presented in Table 2. Application of PCA to the dataset led to not found for the interaction between CRI (chi-square¼0.011,
the conclusion that the three first components accounted for over
Table 2
Anthropometric, smoking and functional characteristics of the group of 53 patients
with COPD. Values are given as mean 7SD. BMI: body mass index; FEV1: forced
expiratory volume in 1 s; CRI: chronic respiratory insufficiency. Smoking habit was
not available for one patient.
Characteristic Value
n
Significant at Po 0.05.
Fig. 4. Clustering validation indexes. Dashed line: partition coefficient (PC). PC
measures fuzziness. The closer to unity the index is, the “crisper” the clustering is.
Continuous line: partition entropy (PE). PE provides information about the Table 4
membership matrix. The closer the value of PE to 0, the “crisper” the clustering is. Confusion matrix between respiratory sounds evolution groups and cluster
memberships. RSE-G1: respiratory sounds evolution, group 1; RSE-G2: respiratory
sounds evolution, group 2.
respiratory sounds and changes in airway diameter gets revealed effects of the progression of COPD and their direct influence on the
in routine auscultation of patients with varying degrees of airway established classification. Another factor to bear in mind is the
obstruction. The emergence or the increase in adventitious sounds inclusion of patients with pneumonia. Radiographic consolidation
and/or decrease in normal sounds can be appreciated in these commonly complicates acute exacerbations of COPD. Pulmonary
cases. consolidation has not been considered an exclusion criterion in the
There are many acoustic studies addressing recognition or major UK national audits of COPD exacerbations [39] as well as in
automatic analysis of respiratory sounds [28]. Different authors relevant recent studies [40–41]. Therefore, AECOPD and coexisting
have designed methods for automatic detection of wheezes pneumonia were included in this work within the definition of
[29–31]. It has been shown that automated detection provides AECOPD. The analysis of the results suggests that the coexistence
earlier detection of wheezes than ordinary auscultation [32]. Other of pneumonia does not reveal any significant relationship with
authors have studied recognition methods to automatically differ- established partitions. These results are consistent with those
entiate between normal and pathological respiratory sounds, and reported in [17], where discrimination between AECOPD and
even discriminate between different types of adventitious sounds pneumonic exacerbations using computerized analysis of respira-
[33–35]. tory sounds recorded at admission was performed with an
Efforts have been focused on the improvement of automatic accuracy of 77.6%. In the study, since a fraction of patients
classification systems for certain adventitious sounds. The goal has admitted because of exacerbation, regardless of its etiology, did
been to provide rates correlated to the degree of airway obstruc- not present the characteristic sounds that enabled discrimination
tion or severity of respiratory disorders. (wheezing and/or crackles) the classifier failed in these cases. This
However, such a strategy has some weak points. First of all, it is fraction could correspond to the patients in cluster I. These
well known that normal lung sounds show interpersonal varia- patients have high values of FEV1 and present no clear adventi-
tions. In addition to this, it is worth pointing out that there exist tious sounds at admission. These adventitious sounds may appear
both same-day variability and between-day variability in lung after initiation of treatment.
sounds [36]. Second, even in the same subject, there is a correla- No significant relationship with coexisting chronic respiratory
tion between respiratory sounds and age, possibly due to the failure was either found. The most relevant finding was related to
change in tissue structure with age, which also leads to a change in the changes of respiratory sounds perceived by the specialists
lung function [37]. Finally, the absence of wheezes in many (RSE). In this respect, the two groups or clusters characterized in
patients with significant airway obstruction is remarkable [38]. this study confirm the aforementioned statement concerning
Therefore, automatic classification tools lose effectiveness in the intra-subject variability. According to Table 4, there was an overall
aforementioned cases. In these patients, other types of changes in agreement of 79% between the clustering results and the RSE
the respiratory sounds, such as the decrease in intensity of normal score. 75% of RSE-G1 patients were assigned to cluster I, whereas
breath sounds, can be perceived on auscultation. 81% of patients classified as RSE-G2 were included in cluster II.
A personalized approach should be then proposed. To this end, Therefore, the group of patients that makes up cluster I displays
this study has applied a different strategy that focused on the the respiratory sounds progression described in the literature. In
estimation of spectral parameters and their changes over time the acute state of exacerbation, some patients do not have
rather than applying automatic detection of adventitious sounds adventitious sounds but decreased vesicular sounds. On the other
or their ratios. hand, the characteristics of the second group (cluster II) largely
This study has delved into the aforementioned direction and correspond with the usual description in the literature, including
has tried to show the existence of two groups of patients the presence of adventitious sounds as symptomatic AECOPD
hospitalized for AECOPD. These groups showed significant differ- indices.
ences, as it can be clearly seen in the exploratory visual analysis in Our study has some limitations: the sample size is relatively
Fig. 2 and Fig. 3. As shown in Fig. 2 and confirmed in Table 3, the small and thus further studies with a larger sample of patients
uMNF, uMDF, uKU and dKU parameters have a discriminatory (different ages and disease severity) should be carried out to
capacity. uKU and dKU have greater mean values for cluster I, confirm the findings. The results of our PCA-based cluster analysis
whereas uMNF and uMDF present greater values for cluster II. suggest that the relationship between the clusters and BMI and
The implementation of PCA and FCM led to a space partition in FEV1 needs to be further researched. P values are bordering
the dataset. The resulting space partition was capable of quantita- statistical significance (0.0442 and 0.0491, respectively). The
tively summarizing the data characteristics. Visual inspection sample of this study is biased to low FEV1 values (mainly GOLD
confirmed the presence of two partially overlapping subsets of 3 and 4 stages). A sample with a wider range of COPD severities is
aggregation. As Fig. 3 illustrates, cluster I has predominantly required to shed some light on the aforementioned limitations.
negative values along principal coordinate I when compared to On the other hand, there have been several attempts, most of
cluster II, which has mainly positive values of this principal them based on biological markers, to define exacerbation pheno-
coordinate. Unlike coordinate I, principal coordinate II is predo- types [42]. Such phenotypes could correspond to different etiolo-
minantly positive for cluster I and negative for cluster II. The two gies (bacterial, viral or eosinophilic). The markers used in such
clusters are an optimum approach, according to the validity studies are expensive and hardly applied in routine clinical
indexes PC and PE, showing only slight overlaps. practice [43]. The existence of different respiratory sounds evolu-
After confirming and quantifying the existence of the afore- tionary patterns in AECOPD opens up the possibility of considering
mentioned two groups, the following step in the analysis was to such patterns as the expression of different exacerbation etiolo-
examine whether the two partitions correlated with the available gies, which makes it much more easily available in daily clinical
clinical variables. Table 3 summarizes the mean values and the practice.
standard deviations of the most relevant parameters for each In recent years, the existence of different COPD phenotypes has
group together with the results of the statistical analysis. been suggested. Such an idea would entail the acceptance of
The study of the prevalence of each group of patients with different groups of patient that share the same clinical, functional,
varying degrees of COPD severity yielded statistically non- prognostic or evolutionary characteristics [44]. In fact, some of
significant results (Fig. 5). However, the intentional non probabil- the aforementioned phenotypes are being more clearly defined
istic sample is characterized by a high percentage of patients with [45–46], and it is possible that either of the clusters identified in
GOLD stage III or IV COPD, which makes it difficult to exclude the this study is related to certain phenotypes.
920 D. Sánchez Morillo et al. / Computers in Biology and Medicine 43 (2013) 914–921
In addition, if it is possible to characterize the course of out the computerized processing of signals, and SA and MAF the
exacerbations to define two groups based on the variation of recording and annotations of data.
certain parameters computed from respiratory sounds analysis,
and if there is a stable correlation between such groups and the
exacerbation profiles, what follows is that the follow-up of these Conflict of interest statement
parameters and the detection of increasing or decreasing trends
may serve as the basis for the establishment of personalized alert The authors declare no conflict of interest.
thresholds to determine the onset of exacerbations with a high
probability of success.
Acknowledgements
5. Conclusions This work was supported in part by the Ambient Assisted Living
(AAL) E.U. Joint Programme, by grants from Ministerio de Educa-
This study suggests that COPD population does not show a ción y Ciencia (Ministry of Education and Science) of Spain and
homogeneous spectrum but two different respiratory sounds Instituto de Salud Carlos III under Projects PI08/90946 and PI08/
patterns that can be differentiated in the course of AECOPD 90947.
through computerized analysis. To our knowledge, the aforemen-
tioned finding has not been described in other previous works,
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Daniel Sánchez Morillo received his Engineering degree in Telecommunications
wheeze detection in patients with obstructed airways and in healthy subjects,
from the University of Seville, Spain and his Ph.D. degree from the University of
J. Asthma 45 (2008) 903–907.
Cádiz, Spain. He is Professor at the School of Engineering of Cádiz and currently is
[32] L. Bentur, R. Beck, D. Berkowitz, J. Hasanin, I. Berger, N. Elias, N. Gavriely,
with the Biomedical Engineering and Telemedicine Researching Group. His
Adenosine bronchial provocation with computerized wheeze detection in
research interests are in biomedical signal processing, e-health, HMI and ambient
young infants with prolonged cough: correlation with long-term follow-up,
assisted living. He is a member of the Spanish Biomedical Engineering Society.
Chest 126 (2004) 1060–1065.
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Proceeding of the Second Joint EMS BMES Conference, October, 2002,
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classification into normal and wheeze classes, Comput. Biol. Med. 39 (2009) Sonia Astorga received her Medical Degree from the Faculty of Medicine (Uni-
824–843. versity of Cádiz, Spain). She has been a scholarship holder in the Pulmonology and
[35] A. Abbas, A. Fahim, An automated computerized auscultation and diagnostic Allergy Unit of the Puerta del Mar University Hospital of Cádiz, where she is
system for pulmonary diseases,, J. Med. Syst. 34 (2010) 1149–1155. researching towards the Ph.D. degree. Her scientific interest is focused to the areas
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healthy adults, Resp. Physiol. 65 (1996) 1–11.
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function in bronchial asthma: how is acute bronchial obstruction reflected in
Miguel Angel Fernandez is Professor at the School of Engineering of Cádiz, Spain,
dyspnoea and wheezing? Respiration 50 (1986) 294–300.
from which he received his Bachelor in Engineering. He currently lectures in
[39] Royal College of Physicians, British Thoracic Society, British Lung Foundation.
Automatics and Systems Engineering in the University of Cádiz and he is with the
Report of the National Chronic Obstructive Pulmonary Disease Audit 2008:
Biomedical Engineering and Telemedicine Researching Group where he is research-
Clinical Audit of COPD Exacerbations Admitted to Acute NHS Trusts Across the
ing towards the Ph.D. degree.
UK London. Royal College of Physicians, 2008.
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and pneumonia as predictors of in-hospital mortality and early readmission in
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[41] D. Lieberman, D. Lieberman, Y. Gelfer, R. Varshavsky, B. Dvoskin, M. Leinonen,
M.G. Friedman, Pneumonic vs nonpneumonic acute exacerbations of COPD, Antonio León is Dr. in Medicine and Associate Professor at the Faculty of Medicine
Chest 122 (2002) 1264–1270. (University of Cádiz, Spain). He is currently the Head of the Pulmonology and
[42] M.H. Cho, G.R. Washko, T.H. Hoffmann, G.J. Criner, E.A. Hoffman, F.J. Martinez, Allergy Unit of the Puerta del Mar University Hospital of Cádiz. He coordinates the
N. Laird, J.J. Reilly, E.K. Silverman, Cluster analysis in severe emphysema COPD care management process by the Ministry of Health (Regional Government of
subjects using phenotype and genotype data: an exploratory investigation, Andalusia) and is a member of the Working Group of the COPD South Association of
Resp. Res. 11 (2010) 30. Pulmonologists and of the Spanish Society of Respiratory Pathology (SEPAR).