BIOINFORMATICS

1-
We are interested by the publications of professor James Allison
1. How many clinical trails does he have?
2. How many review articles does he have on immune checkpoint ?
3. How many review articles does he published on the previous two years?
4. What is the title of his last article he published on immune checkpoint?
For his last article provide the following :
a) Pubmed ID
b) Volume number
c) Issue number
d) Page number
e) Journal name
f) Doi
g) Corresponding author

2- We are interested in the free full text reviewed article of breast cancer
treatment that was published the last 5 years.
1) What is the name of the journal .
2) What is publication date .
3) Give the volume, issue and page number.
4) Give PMID and PMCID.
5) Who is the first and last author .
3-We are interested in the first free full text article published in the last 5
years about human elastin protein.

1) What is the name of the journal

2) Give the PMID PMCID and DOI numbers of this journal
3) What is the date of its publication
4) Give the name of the first author and last author
A. Design primers for the whole sequence corresponding to the first
entry of nonredundant mrna of human myosin
1) Give their GC content
2) Give their melting temperature
B. Repeat part B but with specific primers

4- P53 and cancer

1) How many reviewed articles with free full text have been published
in the last 5 years?
2) How many clinical trials have been published about humans?
a) From the third entry:
i- Give the name of the journal
ii- Give its publication date
iii- Give its volume number, issue number, & page number
iv- Give its doi
v- What is the name of corresponding author
vi- Give the PMID

5- We are interested in the most recent article about “chronic traumatic

encephalopathy”:
a-what is the name of the article?
b-what is the name of the journal?
c-what is its issue number?
d-what is its volume number?
e-what is its PMID?
f-what is the name of the 1st and last authors?
g-what is the name of the corresponding author?

Question2:
We are interested in the first published review free full text article about
“Parkinson’s Disease”:
a-what is the date of publication of this article?
b-what is the PMID of the article?
c-what is the name of the article?
d-what is its volume and issue numbers?
e-what is its page number?
f-what is its doi?

6- William G. Kaelin Jr. is an American Nobel Laureate physician-scientist.

His laboratory studies tumor suppressor proteins.
A) How many articles were published by William G. Kaelin Jr. ?
B) How many review articles were published in the last 5 years?
C) Among those review articles,what is the title of the second most recent
review?
D) i-In what magazine was it published?
ii-What is the volume and issue of this magazine?
iii-What pages is it found in?
E) i-What is the Pubmed ID of this article?
ii-What is the digital object identifier of the article?
F)What’s the corresponding author’s:
i-Full name
ii-affiliation
iii-contact information
G)In how many institute does William G. Kaelin Jr. work?
H)Is William G. Kaelin Jr. the first author?
I)How many references were used to write this review article?
J)Is this article available on PMC database?

7- Exercise one :
We areinterested in articles published by professor Fayyad kazan
1) How many clinical trails he have?
2) How many review articles he have on cancer
3) What is the title of his most recent review articles?
4) Provide journal name, publication date, VOLUME NB, ISSUE NB, DOI &
PMID on TH17 IMMUNE RESPONSE TO ADIPOSE TISSUE.

Exercise two :
We are interested in the articles on covid-19 treatment
1) How many articles whose abstract are available?
2) How many free review articles are available?
3) What is the name of journal, publication date, volume number, issue number,
page number of most recent review article?
4) What is the name of the first and last corresponding authors in this article?
5) What is the PMID, and DOI of this article?

8- We are interested in relationship between growth hormone and muscle mass

1.How many reviews do we have that are sorted by best match in last five
years?
2. Regarding the second entry. Give :
1. The title of the article
2. The name of the journal
3. The date of publication
4. The digital object identifier
5. PMID and PMCID
6. The volume and the issue number
 7. The name of the corresponding author
8. The affiliation of the coordinator

9- We are interested in articles which are published on colon

cancer and oral bacteria
1) How many articles whose abstract are available ?
2) How many clinical articles are available ?
3) How many free review articles are available ?
4) What is the name of the journal for the most recent review
one ?
a) Its publication date ?
b) Its volume number ?
c) Its issue number ?
d) Its page number ?
5) What is the name of the first, co-first, last, co-last and
corresponding authors in this article ?
6) What is its PMID?
PMC? doi ?

10- Zahraa Berro(99677)

Friday, April 24,2020
Questions:
We are interested in studying tonsil derived stem cell therapy for charcot marie
tooth disease
1-What is the issue number of the article?
2- What is its PMID?
3-Is it a Research or Review article?
4- Who are the co-first writers?
5-Write the affiliation of Sung-Chul Jung.
6- How to know if the article is freely available as a full text?

11- We are interested in the articles that are published on brain

cancer
1. what is the number of articles whose abstracts are
available?
2. How many free review articles are available?
3. Concerning the most recent full free reviewed article;
what is :
a. The name of the journal, publication date, volume, issue
number and page number?
b. It’s PMID/PMCID/DOI?
c. The name of the first, cofirst, last, colast and the
corresponding authors?

Exercise 2:
We are interested in the articles that are published by
professor David Borg
1. How many clinical trials does he have?
2. How may articles he published in the previous 2 months?
3. Concerning his first article published on pancreatic cancer:
a. Provide the journal name, publication date, volume, issue
number
b. Provide the name of first, cofirst, last, colast, and
corresponding authors

12-We are interested in article which is published on Crohns disease

 1-How many articles whose abstract are available?
2-How many free review articles are available?
3-What is the name of the most recent review article?
4-How many articles are published on the previous 3 months?
5-provide the publication date, volume number, issue number, doi, PMID
of the second most recent review article
6-what is the name of first, cofirst, last, colast, corresponding author in
this article

13- Hox genes and cardiovascular development

1-How many articles have been published?
2-How many review articles have been published in the last 5 years about hox
genes and cardiovascular development in humans ?

3-Choose the first entry

a. What is the publication date and name of the journal?
b. Give its PMID and doi
c. Give its volume number, issue number, and number of pages
What is the n
d. Name of the corresponding author?

15- Topic:cancer and mutation

Questions:
1. How many reviewed articles with free full text have been published in the
last 10 year?
2. Choose the second entry
3. Give the name of journal
4. Give its publication date
5. Give its volume and issue numbers
6. Give its doi
7. What is the name of the corresponding author
16- Exercise 1
We are interested in articles which are published on stem
cells and immunotherapy.
1) What is the number of articles that their abstract are
available?
2) How many free full text reviewed articles are available?
3) i- what is the title of the most recent free full text
reviewed article that is published in 2020 on humans?
ii-what is the name of the journal, volume, and issue
number?
iii-what is its PMID , PMCID and doi?
iv- what is the name of the corresponding author?
Exercise 2
We are interested in the articles published by Anbok Lee.
i. How many clinical trials does he have?
ii. What is the title of the most recent one?
iii. What is the name of the journal, publication date,
volume and issue number?
iv. What is the author affiliation?
v. What is the doi and PMID?

17- we are interested in article which is published on diabetes 1

1-How many critical trail does we have?
2-How many review does he have on cancer?
3-what is title of his most recent review article?
4-how many article did published in the previous 3 month?
5- provide the publicaion date, volume number, issue number, DIO,PIMD of
fourth most recent on
hypertension?
6-what is the first name of first and last?

18- I- We are interested in the articles concerning the influenza virus H1N1,
1) How many articles are present with their abstract available ?
2) How many review articles are there available ?
3) Among these review articles,
a) how many full free text articles are there available ?
b) Also among these review articles, how many are there related to humans ?
4) Concerning the second most recent review article, determine the :
Title of the article, name of the journal, publication date, volume, issue number
5) Concerning the most recent published article of this topic, determine the
DOI,
PMID, PMCID

II- We are interested in the articles published by Dr. Ekaterina Krauss about
lung
cancer.
1) How many published articles are there available ?
2) How many full free text articles are there ?
3) Concerning the most recent published article, determine :
a)Title of the article, name of the journal, publication date, volume, issue
number
b) the DOI, PMID, PMCID

19- We are interested in the most recent free reviewed article about prostate
cancer.
A. 1) How many entries do you get related to this search.
2) what is the exact title of the article
3) what is the exact date of publication
B. 1) PMID
2) Doi
3) volume and issue
C. 1) who is the first author
2) who is the corresponding author
3) who did arrange the work of this publication
4) how many accesses does this article has
5) how many pages is this article
6) where did they submit this article
E. 1)how many article does the first author has
2) how many review article does he has.
3) does he has any clinical trial work ?

20- We are interested in articles published about colon cancer and red meat
1- How many free full articles are published about this topic?
2- How many review free full articles are published about this topic?
We are interested in the first free full article published in the last 5 years:
3- Indicate the name of the journal where this article is published and the
publication
date.
4- Indicate the volume, issue number, and the pages number.
5- Indicate doi, PMID and PMC.
6- Who is the correspondent author?

21- We are interested in the artices ubcished by Timothy J. Henriih about

HIV.
1) How many artices have their abstraits avaicabce?
2) Regarding the most reient free artice, what is the:
3) Titce of the artice, Name of the journac, Pubciiaton date, Vocume,
4) Issue number, and Page number.
5) 3) What is the PMCID, PMID, and DOI of his frst ubcished editoriac
6) artice?