Professional Documents
Culture Documents
28, 2020
Commercial Systems
Conventional method of placing a drop of centrifuged urine on a glass slide, adding a cover
slip, and examining microscopically has been substantially improved through the use of
commercial slide systems.
The CLSI recommends their use together with standardization of all phases of the
methodology.
Specimen Preparation
Specimen Volume
A standard amount of urine, usually between 10 and 15 mL, is centrifuged in a conical tube.
12-mL volume is frequently used because multiparameter reagent strips are easily immersed in
this volume.
Some laboratories choose to make this correction prior to reporting. For example, if 6 mL of
urine is centrifuged, the results are multiplied by 2.
Centrifugation
The speed of the centrifuge and the length of time the specimen is centrifuged should be
consistent.
The speed of the centrifuge and the length of time the specimen is centrifuged should be
consistent.
Centrifugation calibration should be routinely performed in the laboratory.
To prevent biohazardous aerosols, all specimens must be centrifuged in capped tubes.
Sediment Preparation
Volumes of 0.5 and 1.0 mL are frequently used in doing sediment preparation.
The volume of urine centrifuged divided by the sediment volume equals the concentration
factor, which in the preceding examples is 24 and 12
The probability of detecting elements present in low quantities and is used when quantitating
the number of elements present per millilitre.
The pipettes are also used for sediment resuspension and transfer of specimens to the slide.
The sediment must be thoroughly resuspended by gentle agitation.
Thorough resuspension is essential to provide equal distribution of elements in the microscopic
examination fields.
The volume of sediment placed on the microscope slide should be consistent for each specimen.
The recommended volume is 20 L (0.02 mL) covered by a 22 22 mm glass cover slip.
Commercial systems control the volume of sediment examined by providing slides with
chambers capable of containing a specified volume.
Performed should be consistent and should include observation of a minimum of 10 fields under
both low (10) and high (40) power.
If the conventional glass-slide method is being used, casts have a tendency to locate near the
edges of the cover slip;
It is essential that sediments be examined under reduced light when using bright-field
microscopy.
An epithelial cell will be present to provide a point of reference.
Continuous focusing with the fine adjustment aids in obtaining a complete representation of the
sediment constituents.
Casts are reported as the average number per low-power field following examination of 10
fields, and RBCs and WBCs, as the average number per 10 high-power fields.
Epithelial cells, crystals, and other elements are frequently reported in semiquantitative terms
such as, rare, few, moderate, and many, or as 1±, 2±, 3±, and 4±.
Laboratories should evaluate the advantages and disadvantages of adding an additional
calculation step to the microscopic examination.
Correlation of Results
Many factors can influence the appearance of the urinary sediment, including cells and casts in
various stages of development;
Degeneration, distortion of cells and crystals by the chemical content of the specimen;
The presence of inclusions in cells and casts, and contamination by artifacts
Sediment Stains
Elements such as hyaline casts have a refractive index very similar to that of urine.
Imparts identifying characteristics to cellular structures, such as the nuclei, cytoplasm, and
inclusions.
Most frequently used stain in urinalysis is the Sternheimer-Malbin stain, which consists of crystal
violet and safranin O.
The dye is absorbed well by WBCs, epithelial cells, and casts, providing clearer delineation of
structure and contrasting colors of the nucleus and cytoplasm.
A 0.5% solution of toluidine blue, a metachromatic stain, provides enhancement of nuclear
detail.
Useful in the differentiation between WBCs and renal tubular epithelial cells and is also used in
the examination of cells from other body fluids.
Lipid Stains
The lipid stains, Oil Red O and Sudan III, and polarizing microscopy can be used to confirm the
presence of these elements.
Generally, cholesterol does not stain but is capable of polarization.
Gram Stain
Gram stain is used primarily in the microbiology section for the differentiation between gram-
positive (blue) and gram negative (red) bacteria.
To perform Gram staining, a dried, heat-fixed preparation of the urine sediment must be used.
Hansel Stain
A drug-induced allergic reaction producing inflammation of the renal interstitium, eosinophils
are present in the sediment.
Preferred stain for urinary eosinophils is Hansel stain, consisting of methylene blue and eosin Y
(Lide Labs, Inc, Florissant, Mo.); however, Wright’s stain can also be used.
Yellow-brown granules may be seen in renal tubular epithelial cells and casts or free-floating in
the urine sediment.
It is used and stains the hemosiderin granules a blue color.
Microscopy
Microscope
Essentially all types of microscopes contain a lens system, illumination system, and a body
consisting of a base, body tube, and nosepiece.
Primary components of the lens system are the oculars, the objectives, and the coarse- and
fineadjustment knobs.
Illumination system contains the light source, condenser, and field and iris diaphragms.
The compound bright-field microscope is used primarily in the urinalysis laboratory and consists
of a two-lens system combined with a light source.
Second lens system, the ocular lens, is located in the eyepiece. The path of light passes through
the specimen up to the eyepiece.
Laboratory microscopes normally contain oculars capable of increasing the magnification 10
times; the field of view is determined by the eyepiece and is the diameter of the lens.
Objectives are adjusted to be near the specimen and perform the initial magnification of the
object on the mechanical stage. The image then passes to the oculars for further resolution.
Kohler Illumination
Two adjustments to the condenser—centering and Köhler illumination—provide optimal
viewing of the illuminated field. They should be performed whenever an objective is changed to
center the condenser and obtain Köhler illumination.
Additional focusing of the object should be performed using the adjustment knobs and the
rheostat on the light source.
Routine preventive maintenance procedures on the microscope ensure good optical
performance.
An annual professional cleaning for the microscope is recommended. Light sources are replaced
as necessary .
Types of Microscopy
Bright-Field Microscopy
Phase-Contrast Microscopy
Polarizing Microscopy
Interference-Contrast Microscopy
Dark-Field Microscopy
Fluorescence Microscopy
Sediment Constituents
Clinical Significance
Presence of RBCs in the urine is associated with damage to the glomerular membrane or
vascular injury within the genitourinary tract.
Microscopic analysis may be reported in terms of greater than 100 per hpf or as specified by
laboratory protocol.
Macroscopic hematuria is frequently associated with advanced glomerular damage.
Damage to the vascular integrity of the uri nary tract caused by trauma, acute infection or
inflammation, and coagulation disorders.
The observation of microscopic hematuria can be critical to the early diagnosis of glomerular
disorders and malignancy of the urinary tract and to confirm the presence of renal calculi.
Epithelial Cells
It is not unusual to find epithelial cells in the urine, because they are derived from the linings of
the genitourinary system.
Three types of epithelial cells are seen in urine: squamous, transitional, and renal tubular.
Squamous cells are the largest cells found in the urine sediment.
They contain abundant, irregular cytoplasm and a prominent nucleus about the size of an RBC.
The first structures observed when the sediment is examined under low-power magnification.
It serves as a good reference for focusing of the microscope.
Squamous epithelial cells are commonly reported in terms of rare, few, moderate, or many.
Difficulty identifying squamous cells is rare.
They represent normal cellular sloughing and have no pathologic significance.
Specimens collected using the midstream clean-catch technique contain less squamous cell
contamination.
Variation of the squamous epithelial cell is the clue cell, which does have pathologic significance.
Clue cells are indicative of vaginal infection by the bacterium Gardnerella vaginalis.; this gives
the cell a granular, irregular appearance.
Clue cells is performed by examining a vaginal wet preparation for the presence of the
characteristic cells.
Transitional epithelial cells are smaller than squamous cells and appear in several forms,
including spherical, polyhedral, and caudate.
It is caused by the ability of transitional epithelial cells to absorb large amounts of water.
All forms have distinct, centrally located nuclei.
Usually reported as rare, few, moderate, or many following laboratory protocol.
Presence of a centrally located rather than eccentrically placed nucleus, and supravital staining,
can aid in the differentiation.
Transitional epithelial cells originate from the lining of the renal pelvis, calyces, ureters, and
bladder, and from the upper portion of the male urethra.
Increased numbers of transitional cells seen singly, in pairs, or in clumps (syncytia).
The increase in transitional cells exhibiting abnormal morphology such as vacuoles and irregular
nuclei may be indicative of malignancy or viral infection.
Renal tubular epithelial (RTE) cells vary in size and shape depending on the area of the renal
tubules from which they originate.
The cells from the proximal convoluted tubule (PCT) are larger than other RTE cells. They tend to
have a rectangular shape and are referred to as columnar or convoluted cells.
This is a PCT cell that has absorbed fat globules and could easily be mistaken for a granular or
fatty cast.
Cells from the distal convoluted tubule (DCT) are smaller than those from the PCT and are round
or oval.
Observation of the eccentrically placed round nucleus aids in differentiating them from spherical
transitional cells.
Collecting duct RTE cells are cuboidal and are never round.
RTE cells are often present as a result of tissue destruction (necrosis), the nucleus is not easily
visible in unstained sediment.
RTE cells must be identified and enumerated using high power magnification.
They may be reported as rare, few, moderate, or many, or as the actual number per high-power
field.
Clinical Significance
RTE cells are the most clinically significant of the epithelial cells. The presence of increased
amounts is indicative of necrosis of the renal tubules, with the possibility of affecting overall
renal function.
Conditions producing tubular necrosis include exposure to heavy metals, drug-induced
toxicity, hemoglobin and myoglobin toxicity, viral infections (hepatitis B), pyelonephritis,
allergic reactions, malignant infiltrations, salicylate poisoning, and acute allogenic transplant
rejection.
Renal fragments are an indication of severe tubular injury with basement membrane
disruption.
Single cuboidal cells are particularly noticeable in cases of salicylate poisoning.
One of the functions of RTE cells is reabsorption of the glomerular filtrate, it is not unusual
for them to contain substances from the filtrate.
RTE cells absorb bilirubin present in the filtrate as the result of liver damage.
Confirmation of the presence of hemosiderin is performed by staining the sediment with
Prussian blue. The iron-containing hemosiderin granules stain blue.
RTE cells absorb lipids that are present in the glomerular filtrate.
They then appear highly refractile, and the nucleus may be more difficult to observe.
Confirmed by staining the sediment with Sudan III or Oil Red O fat stains and examining the
sediment using polarized microscopy.
Maltese cross formations in droplets containing cholesterol.
Staining should be performed on sediments negative under polarized light. Oval fat bodies are
reported as the average number per hpf .
Free-floating fat droplets also stain or polarize depending on their composition.
Lipiduria is most frequently associated with damage to the glomerulus caused by the nephrotic
syndrome.
It is also eferred to as “bubble cells,” they appear to represent injured cells in which the
endoplasmic reticulum has dilated prior to cell death.
Bacteria
Bacteria are not normally present in urine. However, unless specimens are collected under
sterile conditions.
May produce a positive nitrite test result and also frequently result in a pH above 8,
indicating an unacceptable specimen.
They are present in the form of cocci (spherical) or bacilli (rods).
It is reported as few, moderate, or many per high-power field.
Observing bacteria for motility also is useful in differentiating them from similarly appearing
amorphous phosphates and urates.
The presence of bacteria can be indicative of either lower or upper urinary tract infection.
Most frequently associated with UTI are the Enterobacteriaceae referred as gram-negative
rods.
The actual bacteria producing an UTI cannot be identified with the microscopic examination.
Yeast
Yeast cells appear in the urine as small, refractile oval structures that may or may not contain a
bud.
It is usually reported as rare, few, moderate, or many per hpf.
Differentiation between yeast cells and RBCs can sometimes be difficult.
The acidic, glucose-containing urine of patients with diabetes provides an ideal medium for the
growth of yeast.
A true yeast infection should be accompanied by the presence of WBCs.
Parasites
Spermatozoa
Spermatozoa are easily identified in the urine sediment by their oval, slightly tapered heads and
long, flagella-like tails.
Urine is toxic to spermatozoa they rarely exhibit the motility observed when examining a semen
specimen.
Occasionally found in the urine of both men and women following sexual intercourse,
masturbation, or nocturnal emission.
A positive reagent strip test for protein may be seen when increased amounts of semen are
present.
Laboratories supporting the reporting of spermatozoa cite the possible clinical significance and
the minimal possibility of legal consequences.
Mucus
It is a protein material produced by the glands and epithelial cells of the lower genitourinary
tract and the RTE cells; Tamm-Horsfall protein is a major constituent of mucus
Appears microscopically as thread-like structures with a low refractive index.
Usually be made by observing the irregular appearance of the mucous threads.
It is reported as rare, few, moderate, or many per lpf.
Casts
Casts are the only elements found in the urinary sediment that are unique to the kidney.
Formed within the lumens of the distal convoluted tubules and collecting ducts.
It provides a microscopic view of conditions within the nephron.
Examination of the sediment for the detection of casts is performed using lower power
magnification.
Once detected, casts must be further identified as to composition using high-power
magnification.
It is reported as the average number per 10 lpfs
Cast Composition and Formation
Major constituent of casts is Tamm-Horsfall protein, a glycoprotein excreted by the RTE cells of
the distal convoluted tubules and upper collecting ducts; proteins present in the urinary filtrate.
Tamm-Horsfall protein is found in both normal and abnormal urine and, as discussed previously,
is a major constituent of mucus. It is not detected by reagent strip protein methods.
As the cast forms, urinary flow within the tubule decreases as the lumen becomes blocked.
Formation of casts at the junction of the ascending loop of Henle and the distal convoluted
tubule may produce structures with a tapered end.
Cylindruria is the presence of urinary casts.
The types of casts found in the sediment represent different clinical conditions and will be
discussed separately in this section.
Hyaline Casts
Most frequently seen cast is the hyaline type, which consists almost entirely of Tamm-Horsfall
protein.
The Qon-exis of zero to two hyaline casts per lpf is considered normal.
Hyaline casts appear colorless in unstained sediments and have a refractive index similar to that
of urine.
They can easily be overlooked if specimens are not examined under subdued light.
Morphology of hyaline casts is varied, consisting of normal parallel sides and rounded ends,
cylindroid forms, and wrinkled or convoluted shapes that indicate aging of the cast matrix.
RBC Casts
The presence of RBC casts is much more specific, showing bleeding within the nephron
RBC casts are primarily associated with damage to the glomerulus (glomerulonephritis) that
allows passage of the cells through the glomerular membrane.
Easily detected under low power by their orange-red color.
More fragile than other casts and may exist as fragments or have a more irregular shape as the
result of tightly packed cells adhering to the protein matrix.
The actual presence of RBCs must also be verified to prevent the inaccurate reporting of Qon-
existent RBC casts.
It is highly improbable that RBC casts will be present in the absence of free-standing RBCs and a
positive reagent strip test for blood.
Presence of massive hemoglobinuria or myoglobinuria, homogenous orange-red or red-brown
casts may be observed.
They are associated with the acute tubular necrosis often caused by the toxic effects of massive
hemoglobinuria that can lead to renal failure.
WBC Casts
The appearance of WBC casts in the urine signifies infection or inflammation within the
nephron.
They are visible under low-power magnification but must be positively identified using high
power.
Supravital staining may be necessary to demonstrate the characteristic nuclei.
Casts tightly packed with WBCs may have irregular borders.
WBCs frequently form clumps, and these do not have the same significance as casts.
Bacterial Casts
Containing bacilli both within and bound to the protein matrix are seen in pyelonephritis.
It can be difficult, because packed casts packed with bacteria can resemble granular casts.
Confirmation of bacterial casts is best made by performing a Gram stain on the dried or
cytocentrifuged sediment.
Casts containing RTE cells represent the presence of advanced tubular destruction, producing
urinary stasis along with disruption of the tubular linings.
They are associated with heavy metal and chemical or drug-induced toxicity, viral infections, and
allograft rejection.
Owing to the formation of casts in the distal convoluted tubule, the cells visible on the cast
matrix are the smaller, round, and oval cells.
Staining and the use of phase microscopy can be helpful to enhance the nuclear detail needed
for identification.
Fatty Casts
Fatty casts are seen in conjunction with oval fat bodies and free fat droplets in disorders causing
lipiduria.
They are highly refractile under bright-field microscopy.
Confirmation of fatty casts is performed using polarized microscopy and Sudan III or Oil Red O
fat stains.
Fats do not stain with Sternheimer-Malbin stain.
Most frequently encountered include RBC and WBC casts in glomerulonephritis and WBC and
RTE cell casts, or WBC and bacterial casts in pyelonephritis.
Presence of mixed elements in a cast may make identification more difficult.
Bacteria are often incorporated into WBC casts and provide little additional diagnostic
significance.
Granular Casts
Coarsely and finely granular casts are frequently seen in the urinary sediment and may be of
pathologic or nonpathologic significance.
It is not considered necessary to distinguish between coarsely and finely granular casts.
The origin of the granules in nonpathologic conditions appears to be from the lysosomes
excreted by RTE cells during normal metabolism.
Scanning electron microscope studies have confirmed that granular casts seen in
conjunction with WBC casts contain WBC granules of varying sizes.
Occurring as a result of cellular disintegration may contain an occasional recognizable cell.
Easily visualized under low-power microscopy; final identification should be performed using
high power to determine the presence of a cast matrix.
Waxy Casts
They are representative of extreme urine stasis, indicating chronic renal failure.
Usually seen in conjunction with other types of casts associated with the condition that has
caused the renal failure.
It is more easily in visualizing than hyaline casts because of their higher refractive index.
With supravital stains, waxy casts stain a homogenous, dark pink.
Broad Casts
Also referred to as renal failure casts, broad casts like waxy casts represent extreme urine
stasis.
Bile-stained broad, waxy casts are seen as the result of the tubular necrosis caused by viral
hepatitis.
Urinary Crystals
Crystal Formation
They are formed by the precipitation of urine solutes, including inorganic salts, organic
compounds, and medications.
Precipitation is subject to changes in temperature, solute concentration, and pH, which affect
solubility.
Extremely abundant in refrigerated specimens and often present problems because they
obscure clinically significant sediment constituents.
A valuable aid in the identification of crystals is the pH of the specimen because this determines
the type of chemicals precipitated.
The most common crystals seen in acidic urine are urates, consisting of amorphous urates, uric
acid, acid urates, and sodium urates.
Amorphous urates appear microscopically as yellowbrown granules; occur in clumps resembling
granular casts.
Uric acid crystals are seen in a variety of shapes, including rhombic, four-sided flat plates
(whetstones), wedges, and rosettes; usually appear yellow-brown, but may be colorless and
have a six-sided shape.
Acid urates and sodium urates are rarely encountered and, like amorphous urates, are seen in
less acidic urine; Acid urate crystals appear as larger granules and may have spicules similar to
the ammonium biurate crystals seen in alkaline urine; Sodium urate crystals are needle-shaped
and are seen in synovial fluid during episodes of gout, but do appear in the urine.
Calcium oxalate crystals are frequently seen in acidic urine, but they can be found in neutral
urine and even rarely in alkaline urine; most common form of calcium oxalate crystals is the
dihydrate that is easily recognized as a colorless, octahedral envelope or as two pyramids joined
at their bases.
Calcium phosphate crystals are not frequently encountered. They may appear as colorless, flat
rectangular plates or thin prisms often in rosette formations.
Amorphous phosphates are granular in appearance, similar to amorphous urates; they can be
differentiated from amorphous urates by the color of the sediment and the urine pH.
Triple phosphate crystals are commonly seen in alkaline urine; they are easily identified by their
prism shape that frequently resembles a “coffin lid”.
Calcium carbonate crystals are small and colorless, with dumbbell or spherical shapes; they may
occur in clumps that resemble amorphous material, but they can be distinguished by the
formation of gas after the addition of acetic acid.
Ammonium biurate crystals exhibit the characteristic yellow-brown color of the urate crystals
seen in acidic urine; they are frequently described as “thorny apples” because of their
appearance as spicule-covered spheres.
Artifacts frequently resemble pathologic elements such as RBCs and casts, artifacts can present
a major problem to students.
Mostly, very highly refractile or occur in a different microscopic plane than the true sediment
constituents.
Starch granule contamination may occur when cornstarch is the powder used in powdered
gloves; resemble fat droplets when polarized, producing a Maltese cross formation; occasionally
be confused with RBCs.
Oil droplets and air bubbles also are highly refractile and may resemble RBCs to inexperienced
laboratory personnel; presence of these artifacts should be considered in the context of the
other urinalysis results.
Pollen grains are seasonal contaminants that appear as spheres with a cell wall and occasional
concentric circles; large size may cause them to be out of focus with true sediment constituents.
Hair and fibers from clothing and diapers may initially be mistaken for casts; they are usually
much longer and more refractile.
Fibers often polarize, whereas, casts, other than fatty casts, do not.
Fecal artifacts may appear as plant and meat fibers or as brown amorphous material in a variety
of sizes and shapes.