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Article history: Toxoplasma gondii is an intracellular protozoan parasite responsible for toxoplasmosis, which affects
Received 28 February 2019 humans and animals. Serologic detection of anti-T. gondii immunoglobulins plays a crucial role in the
Received in revised form 2 June 2019 clinical diagnosis of toxoplasmosis. In this work, a novel electrochemical immunosensor for detecting
Accepted 16 July 2019
anti-T. gondii immunoglobulins is reported, based on immobilization of an in silico predicted pep-
Available online 17 July 2019
tide (PepB3), obtained from membrane protein of T. gondii, on the graphite electrode modified with
poly(3-hydroxybenzoic acid). Indirect ELISA confirmed infection and binding specificity of peptide PepB3.
Keywords:
Molecular modelling and simulations show this peptide binds to the T. gondii human Fab antibody in the
Toxoplasma gondii
Mimetic peptide
surface antigen 1 (SAG1) binding site, remaining a stable complex during the molecular dynamic simula-
Poly(3-hydroxybenzoic acid) tions, especially by hydrogen bonds and hydrophobic interactions. This electrochemical immunosensor
Immunosensor was able to discriminate different periods of infection, using infected mouse serum samples, showing
selectivity and discriminating infected and uninfected mouse serum.
© 2019 Published by Elsevier B.V.
https://doi.org/10.1016/j.jpba.2019.112778
0731-7085/© 2019 Published by Elsevier B.V.
2 L.M. Alves et al. / Journal of Pharmaceutical and Biomedical Analysis 175 (2019) 112778
antigen binds to the antibody, forming a stable imunocomplex, PepB3 isoelectric point (pI) was predicted by PepCalc.com
detected by various types of transducers, such as optical, piezo- tool [34] and its three-dimensional structure was predicted by
electric and electrochemical. Electrochemical immunosensors have I-TASSER suite (https://zhanglab.ccmb.med.umich.edu/I-TASSER/
been explored in several analyses since they are specific, simple, ) [35]. For electrochemical assays, PepB3 was diluted in PBS
rapid, portable, generally disposable and can carry out in situ or buffer (10 g mL−1 ). Blocking solution was prepared with glycine
automated detection [10,10,11,12]. (10 mmol L−1 , Merck, 99%) in phosphate buffer.
As antibody-mediated immune response occurs via the recog-
nition of specific epitopes, reduction of the antigen to minimal 2.4. Docking and molecular dynamic protocol
sequences of peptides has often been addressed [13,14].
Peptides have been used as biorecognition elements due to their X-ray crystallographic data of the monomeric form of T. gondii
stability against denaturation, simple acquisition, specificity, cost surface antigen 1 (SAG1) bound to a human Fab were obtained
effectiveness, standard synthetic protocol, accessibility, easy mod- from the Protein Data Bank [36] (PDB, code 1YNT [37]), being
ification, chemical versatility, chemical combination and selection extracted for analysis chains A (residues 1–104) and C (residues
in random libraries [15]. Several studies reported the application of 501–616), corresponding to a fragment of the Fab variable light
peptides in the detection of immunoglobulins [16–18]. Biosensors chain region. The three-dimensional structure of PepB3 peptide,
applied to toxoplasmosis diagnosis have been described in the liter- result from I-TASSER webserver, was first docked to the Fab anti-
ature [19–27], however, they do not use peptides as biorecognition body fragment. Molecular docking simulations were run in the
probe. specialized antibody-antigen modelling webservers ClusPro [38]
In this work, a novel electrochemical immunosensor is reported, and Rosie [39], with default parameters. 10 best-ranked solu-
using an in silico predicted peptide, for detecting anti-T. gondii tions were selected from each server, resulting in 20 complexes
immunoglobulins in real samples of infected mouse serum, as proof for the following molecular dynamic (MD) simulations. MD sim-
of concept of the applicability of this immunosensor in the detec- ulations were carried out using GROMACS 5.1.4 [40,41] with the
tion of toxoplasmosis. GROMOS 54a7 force field [42], with time step of 2 fs and the MD
integrator. For each of the 20 models, energy minimization was
2. Experimental performed using the steepest descent, followed by the conjugated
gradient algorithms, first in vacuum, then in a cubic box filled with
2.1. Chemicals water model spc216 and counter ions with salt concentration of
0.15 mol.L−1 in a neutral system. After the energy minimization
All reagents used were of analytical grade, without previ- procedure, pressure followed by volume equilibration were car-
ous purification. Solutions were prepared with deionized water ried out during 100 ps each. Production runs were performed after
(Gehaka, 18 M cm) and bubbled with ultrapure N2 prior to the equilibration step, MD simulations were coupled to an external
electrochemical measurements. The monomer employed for the heat bath to control temperature in 300 K, according to the veloc-
polymerization reaction was 3-hydroxybenzoic acid (3-HBA) 99%, ity rescaling method [43], with a coupling constant of 0.1 ps. MD
purchased from Sigma–Aldrich (USA). Buffer solutions were saline simulations were carried out over 40 ns, with snapshots recorded
phosphate buffer (PBS, 0.01 mol L−1 , pH 7.4, containing NaCl, at every 10 ps, and data were analyzed after the equilibration step.
10 mmol L−1 ) and phosphate buffer (0.1 mol L−1 , pH 7.4). Detec- PepB3-Fab complexes had the interaction analysis evaluated by the
tions were performed in KCl solution (0.10 mol L−1 ), containing LigPlot software [43] and protein structural figures were prepared
K4 Fe(CN)6 (5.0 mmol L-1 ). Experiments were conducted at room with PyMOL (https://pymol.org).
temperature (25 ± 1 ◦ C).
Electrochemical measurements were performed with a CHI Soluble Toxoplasma gondii antigen (STAg) was produced using
760C potentiostat (CH Instruments, USA). Graphite disk (6.15 mm tachyzoites obtained in vitro [44]. Tachyzoites of RH strain were
diameter, purity 99.9995%) from Alfa Aesar was used as working maintained by serial passages in HeLa cell line (CCL-2, ATCC,
electrode. Platinum plate and silver/silver chloride (3.0 mol L−1 ) Manassas, VA, USA), being cultured using RPMI 1640 medium,
were used as auxiliary and reference electrodes, respectively. Sur- supplemented with glutamine (2 mmol L−1 ), penicillin (100U/mL)
face morphology was assessed by atomic force microscopy (AFM and streptomycin (100 g/mL), at 37 ◦ C in 5% CO2 atmosphere.
5100 N, Hitachi), performed in intermittent mode. Briefly, the parasite suspensions were submitted to freeze-thawing
and sonication cycles, in the presence of protease inhibitors,
2.3. Peptide selection centrifuged, the supernatant collected and the protein content
determined by Bradford method [45].
PepB3 (APTGDPSQNSDGNRG) selection [28] was performed
using resources available online. Briefly described ahead, the 2.6. Infected mouse serum
sequence of SAG related sequence 52 A (SRS52A), a membrane
protein of T. gondii, was obtained from ToxoDB (www.toxodb.org/ Female Swiss mice were infected with 10 cysts of ME49 strain,
toxo) [29,30]. The whole protein was analyzed using B cell epitope intraperitoneally, and blood samples were collected on the day of
prediction score resources, available at Immune Epitope Database infection and after 15, 30, 45, 60, 75 and 100 days, and centrifuged at
and Analysis Resource (IEDB – www.iedb.org) [31], searching for 1000 rpm for 10 min at room temperature. Three animals were used
sequences of 15 amino acids with high B cell prediction score. for each infection time evaluated. The animals were maintained
Prediction of linear epitopes was performed by Bepipred linear under standard conditions in the Bioterism Center and Animal
prediction method using the minimum score of 1.5 [32]. Several Experimentation, Federal University of Uberlândia, Brazil. All pro-
peptides were selected and chemically synthetized as described cedures were conducted according to institutional guidelines for
elsewhere [33], tested against infected mice serum and the PepB3 animal ethics and the study received approval of the Ethics Com-
presented better results for the detection of serum samples from mittee for Animal Experimentation of the Institution (CEUA-UFU)
mice infected with Toxoplasma gondii. under the protocol 109/2016.
L.M. Alves et al. / Journal of Pharmaceutical and Biomedical Analysis 175 (2019) 112778 3
Infection and binding specificity of peptide PepB3 were con- linear regression analysis were performed with GraphPad Prism
firmed by two indirect ELISA protocols. The first, using STAg 6. Numerical data (days of infection and stability) were analysed
as coating antigen, was performed as described elsewhere [44]. statistically and compared using the one-way-ANOVA followed by
Briefly, high-binding microtiter plates (Corning Laboratories 3590, Dunnett’s test, using freeware R version 3.4.4 [47]. Values of P < 0.05
New York, USA) were coated with solution of STAg in carbon- were considered statistically significant.
ate buffer (10 g/mL, pH 9.6), 50 L/well, followed by overnight
incubation at 4 ◦ C. Next, the plates were washed with 200 L/well
of PBS-Tween 0.05% (PBST) three times. Remaining binding sites
in wells were blocked with 100 l of PBST supplemented with 3. Results
5% skim fat milk (PBSTD) at room temperature. The plate was
washed and mice serum samples were diluted in PBSTD in the 3.1. Insights into the immunosensor/peptide recognition and
dilution of 1:50, and each well received 50 l of sera. After the stability in the molecular level
plates had been incubated for 1 h at 37 ◦ C, they were washed
and dilutions of antibody against mouse Fc-specific IgG labeled In silico designed 15-residue peptide PepB3 had its sequence
with peroxidase (Sigma–Aldrich, USA) were applied to the wells based in the binding epitope of the surface antigen 1 (SAG1). SAG1
(50 L/well of 1:2000 conjugated antibody), followed by 1 h of is a membrane protein of T. gondii, important immune target due
incubation at 37 ◦ C. The plate was washed and the reaction to its strong response against the invasive tachyzoite, in addition to
revealed using 50 L/well of commercial developing solution ABTS its role as a “hot spot” decoy and adhesion during host-cell attach-
(0.03% H2 O2 and 0.01 mol.L−1 of chromogen 2,2 –azin-biz-3-ethil- ment by binding to proteoglycans [37]. Graille et al reported that a
benzothiazoline sulfonic acid; Sigma–Aldrich, USA). Optical density crystal structure monomeric of the T. gondii SAG1 protein forms a
(OD) was determined at 405 nm in a plate reader (Tecan Spectra complex with a monoclonal antibody Fab derived from an antibody
Classic, Grödig, Austria). The ELISA protocol using PepB3 as coating representative for infection with T. gondii, mimicking the human
antigen was similar to STAg ELISA, described above. The differ- immunological response for this disease [37].
ences were observed in the coating antigen used, which was PepB3 SAG1 derived PepB3 peptide was submitted to antibody/antigen
instead of STAg. The solution used to dilute sera samples and labeled molecular docking and dynamic simulations in order to gain
antibodies was PBST plus 0,5% of Bovine Serum Albumine (BSA). All insights into the immunosensor/peptide structural interactions
the remaining steps were identical to STAg ELISA protocol. and stability.
Fig. 1 shows the top-ranked structure of the 20 resulting com-
2.7. Preparation of graphite electrode modified with plexes PepB3/Fab fragment. In all the modelling experiments,
poly(3-hydroxybenzoic acid PepB3 binds to the SAG1 epitopes binding surface of Fab present
in the native complex crystal structure [37].
Bare graphite electrodes were polished mechanically with alu- Fig. 1A shows a schematic representation of the peptide-based
mina slurry (0.3 m), sonicated, washed with deionized water and electrochemical immunosensor, with detection carried out by
dried in air. Preconditioning of the electrodes was performed by differential pulse voltammetry in potassium ferrocyanide solu-
cyclic voltammetry in 0.5 mol L−1 HClO4 solution, between +0.0 tion. MD simulations of the predicted PepB3/antibody complexes
and +1.2 V, 4 cycles, 50 mV s−1 . Electrodes were modified with revealed all complexes were kinetically stable during the whole
polymer derived from 3-hydroxybenzoic acid according to Ferreira simulations with small fluctuations in the RMSD as function of
and collaborators [46], with modifications. Electropolymerization time (Fig. 1D and S1). Fig. 1B and C show the final structure of one
was conducted on graphite electrodes (10 scans, 0.0 and +1.2 V vs. simulated complex PepB3/Fab in Fig. 1D, resulting in small mean
Ag/AgCl, 50 mV s−1 ) from 3-HBA solution (2.5 mmol L−1 ) prepared deviation of 0̃.4 nm of the initial docked complex. The complex is
in HClO4 (0.5 mol L−1 ). mainly stabilized by hydrogen bonds and hydrophobic interactions
in a similar manner as the native SAG1/Fab complex.
2.8. Preparation of the peptide-modified electrode Electrostatic interactions were not quantified despite of the fact
that charged residues were prioritized in the PepB3 sequence pre-
After production of the graphite electrode modified with poly(3- diction, yet charged residues are found to interact in the PepB3/Fab
HBA), the sensitization with PepB3 probe was carried out. Solution binding interface as predicted.
containing 10 g mL−1 of peptide probe was dropped onto the This molecular modelling of the PepB3/antibody is an attempt
electrode surface at 37 ◦ C and incubated for 30 min. Blocking of to show how stable was the predicted complex with the electro-
non-specific binding was performed with glycine (10 mmol.L−1 ) at chemically active peptide acting as a probe for the novel T. gondii
37 ◦ C for 1 h. After immobilization of the peptide and surface block- immunosensor. This study in the molecular level of structure-
ing, 10 l of infected mouse serum (0, 15, 30 and 60 days after T. dynamic, related to the interaction-stability of the complex, might
gondii infection), diluted (1:25) in phosphate buffer (0.1 mol L−1 , pH shed some light into the development of even more efficient pep-
7.4) was added and incubated for 30 min. After each modification, tides for T. gondii immunosensors.
the electrodes were washed three times with 50 l of phosphate
buffer. Differential pulse voltammetry measurements were per-
formed using potassium ferrocyanide solution as electrolyte. The
immunosensor performance was evaluated with varying dilutions 3.2. Infected mouse serum tested by ELISA
of infected mouse serum (30 days of infection) in phosphate buffer
(1:100, 1:75, 1:50, 1:25, 1:10). Finally, the immunosensor perfor- Samples of infected animals were tested by ELISA against STAg
mance was evaluated after storage at 10 ◦ C for 30 days. (control) and PepB3. As shown in Fig. 2, crescent absorbance val-
ues until the 30th day of infection were observed for pepB3 and
2.9. Statistics and data presentation against STAg until the 45th day of infection and after remaining
constant. Both groups showed low rates of false positive and false
All experiments were performed in triplicate and numeric negative (<5%; data not shown). The results obtained by this tech-
results are presented as arithmetic means ± standard deviation. For nique confirm the infection of the mice and the pepB3 binding
each measurement, a new electrode was used. Graphs and simple specificity.
4 L.M. Alves et al. / Journal of Pharmaceutical and Biomedical Analysis 175 (2019) 112778
Fig. 1. A) Schematic representation of the peptide-based electrochemical immunosensor. The antibody pictured (Fab) is represented in green and the immobilized peptide
PepB3 in red. Molecular docking and molecular dynamic (MD) simulations of the top-ranked PepB3-Fab complex is shown with the amino acid residues of the binding
surface evidenced in B) (three-dimensional structure) and C) (two-dimensional projection). Hydrogen bonds (dashed lines) and hydrophobic interactions (red contours) of
the interacting surface are also shown in B) and C). D) Root mean square deviation (RMSD) of the starting docked structure as function of the computational time. The final
complexed structure is also shown in the end of the 40 ns run (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of
this article).
Fig. 3. (A) Differential pulse voltammograms and (B) histogram obtained from current peak response of K4 [Fe(CN)6 ] oxidation of graphite electrodes modified with poly(3-
HBA) before (a) and after (b) immobilization of pepB3. Electrolyte: KCl solution (0.10 mol.L−1 ), containing K4 Fe(CN)6 ( 5.0 mmol.L−1 ). Modulation amplitude: 25 mV. Pulse
interval: 0.2 s; Scan rate: 20 mV s−1 . (C) AFM topographical images of graphite/poly(3-HBA); (D) graphite/poly(3-HBA)/PepB3.
Fig. 5. Relation between current and the inverse of dilution factor (1:10, 1:25, 1:50
and 1:100) of infected mouse serum (30 days of infection). Electrolyte: KCl solution
Fig. 4. Histogram obtained from current peak response of K4 [Fe(CN)6 ] oxidation (0.10 mol.L−1 ), containing K4 Fe(CN)6 ( 5.0 mmol.L−1 ). Modulation amplitude: 25 mV.
in graphite electrodes modified with pepB3 and after 30 min of incubation with Pulse interval: 0.2 s; Scan rate: 20 mV s−1 .
mouse serum samples (n = 3), from 0 to 60 days after T. gondii infection. Electrolyte:
KCl solution (0.10 mol.L−1 ), containing K4 Fe(CN)6 ( 5.0 mmol.L−1 ). Modulation ampli-
tude: 25 mV. Pulse interval: 0.2 s; Scan rate: 20 mV s−1 . (*) Significant differences amino acid residues (lysine, arginine and histidine), favoring the
between the negative control (0 day) and 15, 30 and 60 days (P < 0.05; ANOVA). electronic transfer for the redox pair, in accordance with the liter-
ature [52,53].
ing surface modification with the probe, in agreement with the Fig. 4 indicates that the developed immunosensor discriminates
analysis by differential pulse voltammetry. between serum samples from uninfected and infected mice and,
monitoring the increase of anti-T. gondii immunoglobulin, it is able
3.4. Detection of specific immunoglobulins in infected mouse to differentiate the days of infection, being suitable for qualitative
serum analysis of T. gondii infection. ANOVA - F test of analysis of variance
for days of infection variable is indicated in Table S1.
Mouse serum samples, after infection by T. gondii, were applied
to the immunosensor and evaluated by differential pulse voltam- 3.5. Calibration curve and stability of the biossensor
metry, aiming selectivity analysis (Fig. 4).
An increase in current intensity for 15, 30 and 60 days is showed The immunosensor response was evaluated to different dilu-
in Fig. 4, when compared to 0 day (negative control). This increase tions of mouse serum (1:10, 1:25, 1:50 and 1:100), from 30 days
suggests an interaction between the PepB3 peptide and anti-T. after T. gondii infection, being observed an increase in the cur-
gondii immunoglobulins present in the samples. rent peak response with decrease in dilution. From these data, a
For the positive samples, the increase of the current values linear relation of the current values in function of the inverse of
observed after the interaction of the peptide with antibodies the dilution factor given by I/A = 335.3 (1/dilution factor) + 43.23,
occurred, possibly, due to alteration in the three-dimensional struc- r = 0.9967) was found (Fig. 5), being possible to detect up to 1: 100
ture of the immunoglobulin, causing an exposure of some basic dilution of mouse serum sample.
6 L.M. Alves et al. / Journal of Pharmaceutical and Biomedical Analysis 175 (2019) 112778
References
Nanoparticles Fe3O4/CdTe Biosensor, Int. J. Biochem. Res. Rev. 6 (3) (2015) antigen 1 (SAG1) and a monoclonal antibody that mimics the human immune
130–139, http://dx.doi.org/10.9734/IJBCRR/2015/15254. response, J. Mol. Biol. 354 (2) (2005) 447–458, http://dx.doi.org/10.1016/j.
[24] G. Gokce, A. Erdem, C. Ceylan, M. Akgöz, Voltammetric detection of jmb.2005.09.028.
sequence-selective DNA hybridization related to Toxoplasma gondii in PCR [38] D. Kozakov, D.R. Hall, B. Xia, K.A. Porter, D. Padhorny, C. Yueh, D. Beglov, S.
amplicons, Talanta 149 (2016) 244–249, http://dx.doi.org/10.1016/j.talanta. Vajda, The ClusPro web server for protein-protein docking, Nat. Protoc. 12 (2)
2015.11.071. (2017) 255–278, http://dx.doi.org/10.1038/nprot.2016.169.
[25] L.M. Alves, V.R. Rodovalho, A.C.H. Castro, M.A.R. Freitas, C.M. Mota, T.W.P. [39] B.D. Weitzner, J.R. Jeliazkov, S. Lyskov, N. Marze, D. Kuroda, R. Frick, J.
Mineo, J.R. Mineo, J.M. Madurro, A.G. Brito-Madurro, Development of direct Adolf-Bryfogle, N. Biswas, R.L. Dunbrack Jr., J.J. Gray, Modeling and docking of
assays for Toxoplasma gondii and its use in genomic DNA sample, J. Pharm. antibody structures with Rosetta, Nat. Protoc. 12 (2) (2017) 401–416, http://
Biomed. Anal. 145 (2017) 838–844, http://dx.doi.org/10.1016/j.jpba.2017.07. dx.doi.org/10.1038/nprot.2016.180.
050. [40] D. Van Der Spoel, E. Lindahl, B. Hess, G. Groenhof, A. Mark, H. Berendsen,
[26] V. Medawar-Aguilar, C.F. Jofré, M.A. Fernández-Baldo, A. Alonso, S. Angel, J. GROMACS: fast, flexible, and free, J. Comput. Chem. 26 (16) (2005)
Raba, S.V. Pereira, G.A. Messina, Serological diagnosis of Toxoplasmosis 1701–1718, http://dx.doi.org/10.1002/jcc.20291.
disease using a fluorescent immunosensor with chitosan-ZnO-nanoparticles, [41] M.J. Abraham, T. Murtola, R. Schulz, S. Páll, J.C. Smith, B. Hess, E. Lindahl,
Anal. Biochem. (2018), http://dx.doi.org/10.1016/j.ab.2018.10.025. GROMACS: high performance molecular simulations through multi-level
[27] E.A. Takara, S.V. Pereira, M.L. Scala-Benuzzi, M.A. Fernández-Baldo, J. Raba, parallelism from laptops to supercomputers, SoftwareX 1–2 (2015) 19–25,
G.A. Messina, Novel electrochemical sensing platform based on a http://dx.doi.org/10.1016/j.softx.2015.06.001.
nanocomposite of PVA/PVP/RGO applied to IgG anti- Toxoplasma gondii [42] M. Christen, P.H. Hünenberger, D. Bakowies, R. Baron, R. Bürgi, D.P. Geerke,
antibodies quantitation, Talanta 195 (2019) 699–705, http://dx.doi.org/10. T.N. Heinz, M.A. Kastenholz, V. Kräutler, C. Oostenbrink, C. Peter, D. Trzesniak,
1016/j.talanta.2018.11.070. W.F. van Gunsteren, The GROMOS software for biomolecular simulation:
[28] H.L.S. Barros, S.S. Santana, A.C.A.M. Pajuaba, P. da Silva Cardoso Barros, F. dos GROMOS05, J. Comput. Chem. 26 (16) (2005) 1719–1751, http://dx.doi.org/
Reis de Carvalho, V.F. de Paiva, T. Wilson Patriarca Mineo, J.R. Mineo, C57BL/6 10.1002/jcc.20303.
mice immunized with synthetic peptides from Toxoplasma gondii surface [43] R.A. Laskowski, M.B. Swindells, LigPlot+: Multiple Ligand–Protein Interaction
and microneme immunodominant antigens are able to decrease parasite Diagrams for Drug Discovery, J. Chem. Inf. Model. 51 (10) (2011) 2778–2786,
burden in the brain tissues, Acta Trop. 196 (2019) 1–6, http://dx.doi.org/10. http://dx.doi.org/10.1021/ci200227u.
1016/j.actatropica.2019.05.003. [44] S.S. Santana, D.A.O. Silva, L.D. Vaz, C.P. Pirovani, G.B. Barros, E.M. Lemos, R.
[29] B. Gajria, A. Bahl, J. Brestelli, J. Dommer, S. Fischer, X. Gao, M. Heiges, J. Iodice, Dietze, J.R. Mineo, J.P. Cunha-Junior, Analysis of IgG subclasses (IgG1 and
J.C. Kissinger, A.J. Mackey, D.F. Pinney, D.S. Roos, C.J. Stoeckert, H. Wang, B.P. IgG3) to recombinant SAG2A protein from Toxoplasma gondii in sequential
Brunk, ToxoDB: an integrated Toxoplasma gondii database resource, Nucleic serum samples from patients with toxoplasmosis, Immunol. Lett. 143 (2)
Acids Res. 36 (2007) D553–D556, http://dx.doi.org/10.1093/nar/gkm981 (2012) 193–201, http://dx.doi.org/10.1016/j.imlet.2012.02.008.
(Database). [45] M.M. Bradford, A rapid and sensitive method for the quantitation of
[30] C. Jung, C.Y.F. Lee, M.E. Grigg, The SRS superfamily of Toxoplasma surface microgram quantities of protein utilizing the principle of protein-dye binding,
proteins, Int. J. Parasitol. 34 (3) (2004) 285–296, http://dx.doi.org/10.1016/j. Anal. Biochem. 72 (1976) 248–254, http://dx.doi.org/10.1016/0003-
ijpara.2003.12.004. 2697(76)90527-3.
[31] Y. Kim, J. Ponomarenko, Z. Zhu, D. Tamang, P. Wang, J. Greenbaum, C. [46] D.C. Ferreira, L.P. Rodrigues, J.M. Madurro, A.G.B. Madurro, R.T.S. Oliveira, O.
Lundegaard, A. Sette, O. Lund, P.E. Bourne, M. Nielsen, B. Peters, Immune Abrahão, Graphite electrodes modified with poly(3-hydroxybenzoic acid) for
epitope database analysis resource, Nucleic Acids Res. 40 (W1) (2012) oligonucleotides sensors, Int. J. Electrochem. Sci. 9 (2014) 6246–6257.
W525–W530, http://dx.doi.org/10.1093/nar/gks438. [47] C.R. Team, R: A Language and Environment for Statistical Computing, 2017.
[32] J.E. Larsen, O. Lund, M. Nielsen, Improved method for predicting linear B-cell [48] M.C. Gerard, A. Chaubey, B.D. Malhotra, Application of conducting polymers
epitopes, Immunome Res. 2 (2006), http://dx.doi.org/10.1186/1745-7580-2-2. to biosensors, Biosens. Bioelectron. 12 (2002) 345–359, http://dx.doi.org/10.
[33] C. Toledo-Machado, L. Bueno, D. Menezes-Souza, R. Machado-de-Avila, C. 1016/S0956-5663(01)00312-8.
Nguyen, C. Granier, D. Bartholomeu, C. Chávez-Olórtegui, R. Fujiwara, Use of [49] M. Ates, A review study of (bio)sensor systems based on conducting
Phage Display technology in development of canine visceral leishmaniasis polymers, Mater. Sci. Eng. C Mater. Biol. Appl. 33 (4) (2013) 1853–1859,
vaccine using synthetic peptide trapped in sphingomyelin/cholesterol http://dx.doi.org/10.1016/j.msec.2013.01.035.
liposomes, Parasit. Vectors 8 (1) (2015) 133, http://dx.doi.org/10.1186/ [50] C.I. Awuzie, Conducting polymers, Mater Today Proc. 4 (4) (2017) 5721–5726,
s13071-015-0747-z. http://dx.doi.org/10.1016/j.matpr.2017.06.036.
[34] S. Lear, S.L. Cobb, Pep-Calc.com: a set of web utilities for the calculation of [51] F.E. Kanik, M. Kolb, S. Timur, M. Bahadir, L. Toppare, An amperometric
peptide and peptoid properties and automatic mass spectral peak acetylcholine biosensor based on a conducting polymer, Int. J. Biol. Macromol.
assignment, J. Comput. Aided Mol. Des. 30 (3) (2016) 271–277, http://dx.doi. 59 (2013) 111–118, http://dx.doi.org/10.1016/j.ijbiomac.2013.04.028.
org/10.1007/s10822-016-9902-7. [52] A.G. Brito-Madurro, L.F. Ferreira, S.N. Vieira, R.G. Ariza, L.R.G. Filho, J.M.
[35] J. Yang, R. Yan, A. Roy, D. Xu, J. Poisson, Y. Zhang, The I-TASSER Suite: protein Madurro, Immobilization of purine bases on a poly-4-aminophenol matrix, J.
structure and function prediction, Nat. Methods 12 (1) (2015) 7–8, http://dx. Mater. Sci. 42 (9) (2007) 3238–3243, http://dx.doi.org/10.1007/s10853-006-
doi.org/10.1038/nmeth.3213. 0235-0.
[36] H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. [53] C.M. de Castro, S.N. Vieira, R.A. Gonçalves, A.G. Brito-Madurro, J.M. Madurro,
Shindyalov, P.E. Bourne, The protein data bank, Nucleic Acids Res. 28 (1) Electrochemical and morphologic studies of nickel incorporation on graphite
(2000) 235–242, http://dx.doi.org/10.1093/nar/28.1.235. electrodes modified with polytyramine, J. Mater. Sci. 43 (2) (2007) 475–482,
[37] M. Graille, E.A. Stura, M. Bossus, B.H. Muller, O. Letourneur, N. Battail-Poirot, http://dx.doi.org/10.1007/s10853-007-1880-7.
G. Sibaï, M. Gauthier, D. Rolland, M.-H. Le Du, F. Ducancel, Crystal structure of [54] Q. Liu, J. Wang, B.J. Boyd, Peptide-based biosensors, Talanta 136 (2015)
the complex between the monomeric form ofToxoplasma gondii surface 114–127, http://dx.doi.org/10.1016/j.talanta.2014.12.020.