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Integrative Taxonomy:
A Multisource Approach
ANNUAL
REVIEWS Further to Exploring Biodiversity
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Annual Reviews content online,
including:
Birgit C. Schlick-Steiner,1 Florian M. Steiner,1
• Other articles in this volume Bernhard Seifert,2 Christian Stauffer,3
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• Top cited articles


• Top downloaded articles Erhard Christian,4 and Ross H. Crozier5
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• Our comprehensive search 1


Institute of Ecology, University of Innsbruck, 6020 Austria;
email: Birgit.Schlick-Steiner@uibk.ac.at; Florian.M.Steiner@uibk.ac.at
2
Senckenberg Museum für Naturkunde Görlitz, 02806 Görlitz, Germany;
email: Bernhard.Seifert@senckenberg.de
3
Institute of Forest Entomology, Forest Pathology and Forest Protection, BOKU,
University of Natural Resources and Applied Life Sciences, 1190 Vienna, Austria;
email: Christian.Stauffer@boku.ac.at
4
Institute of Zoology, BOKU, University of Natural Resources and Applied Life Sciences,
1180 Vienna, Austria; email: Erhard.Christian@boku.ac.at
5
School of Marine and Tropical Biology, James Cook University, Townsville,
Queensland 4811, Australia; email: Ross.Crozier@jcu.edu.au

Annu. Rev. Entomol. 2010. 55:421–38 Key Words


First published online as a Review in Advance on complementarity of disciplines, species delimitation hypotheses,
September 8, 2009
resolution of disagreement, procedural protocol, catalysis of
The Annual Review of Entomology is online at evolutionary biology
ento.annualreviews.org

This article’s doi: Abstract


10.1146/annurev-ento-112408-085432
Good alpha taxonomy is central to biology. On the basis of a survey of
Copyright  c 2010 by Annual Reviews. arthropod studies that used multiple disciplines for species delimitation,
All rights reserved
we evaluated the performance of single disciplines. All included disci-
0066-4170/10/0107-0421$20.00 plines had a considerable failure rate. Rigor in species delimitation can
thus be increased when several disciplines chosen for complementarity
are used. We present a flexible procedure and stopping rule for inte-
grative taxonomy that uses the information from different disciplines
separately. Disagreement among disciplines over the number and de-
marcation of species is resolved by elucidating and invoking evolution-
ary explanations for disagreement. With the identification of further
promising study organisms and of new questions for in-depth analysis,
evolutionary biology should profit from integrative taxonomy. An im-
portant rationale is clarity in researcher bias in the decision-making pro-
cess. The success of integrative taxonomy will further increase through
methodological progress, taxonomic training of evolutionary biologists,
and balanced resource allocation.

421
ANRV397-EN55-22 ARI 10 November 2009 11:17

INTRODUCTION Three imperatives drive integrative taxon-


omy. First, morphological methods fail in some
The Task, Relevance, and State cases, absolutely necessitating the application
Taxonomy: science of of Alpha Taxonomy
characterizing, of other approaches, and, second, even where
classifying, and Taxonomy is central to exploring and under- morphology can succeed in delimiting species,
naming taxa standing biodiversity. It is the science of char- other approaches can assist significantly and
Species category: acterizing, classifying, and naming taxa. Alpha speed the process (5, 8, 9, 12, 15, 25, 32–34,
level in taxonomic taxonomy deals with the species category, beta 38, 44, 48, 49, 51, 55–60, 63, 76). Third, the use
hierarchy, considered of several disciplines helps taxonomy go beyond
taxonomy with higher categories. To most biol-
by most to reflect
ogists, the species category is unique in the taxo- the naming of species to understanding the pro-
actual evolving groups
nomic hierarchy in that it has claims to objective cesses bringing them about. This is especially
Species delimitation:
apparent in cases of disagreement among disci-
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building explicit reality (1, 10, 57). Delimiting species—using


hypotheses as to which empirical data to build explicit hypotheses as to plines, in that such cases are resolved by drawing
on evolutionary biology (15, 18, 19, 44, 48, 49,
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

specimens constitute which specimens belong to particular species


particular species taxa taxa (57)—is a practical application of such a 51, 55–59).
Species concept: view. Any species delimitation depends on a the- Integrative taxonomy does not replace tra-
theoretical definition oretical idea of what species are, a species con- ditional taxonomy. Rather, it compresses the
of the entity species; traditional but slow taxonomic routine of vis-
cept. Whichever of the more than 20 species
over 20 concepts
concepts (23) is chosen, a delimitation criterion iting a taxonomic problem repeatedly (1, 3,
available
appropriate to that concept is required, and the 24, 65, 66) into one procedure by coordinat-
Delimitation
concept used will influence the choice, analysis, ing the findings of different disciplines under
criterion: empirical
method for translating and interpretation of data (2, 32). the procedure. By doing so, integrative taxon-
a species concept into Alpha taxonomy is central to biology: omy improves rigor. More rigorous delimita-
the logic of data Species are the basic units of many fields tion by integrative taxonomy has yielded a bet-
analysis and ter biodiversity inventory, by both increasing
(2, 49, 57) and the species name provides
interpretation
the link to the knowledge about an organ- and decreasing species numbers. Increases have
Hypothesis-driven been due especially to the discovery of cryp-
ism. The need for good alpha taxonomy is
approach: test of
further increased by the biodiversity crisis tic species, with prominent examples including
prior hypotheses with
data (37, 64, 65), both for assisting conservation understudied marine (5, 33) and tropical ter-
programs and documenting diversity before restrial taxa (5, 7, 9, 38, 48, 76) but extending
Discovery approach:
data analysis without it is lost. However, taxonomy’s resources— to well-studied biomes (49, 55, 56, 60). Species
prior hypotheses; including manpower—have been declining numbers have decreased through demonstra-
hypotheses follow steadily, both in absolute numbers and in pro- tion of conspecificity of nominal species, thus
from data often ending longstanding taxonomic disputes
portion to the rest of biology, and this decline
has strongly affected the field’s vitality and ac- (34, 45, 58).
centuated the taxonomic impediment (3, 6, 54,
61, 74).
WORKING TERMINOLOGY
A delimitation hypothesis is one about the num-
Integrative Taxonomy ber and demarcation of the species in the set
A multisource approach that takes advantage of of specimens. We recognize two approaches
complementarity among disciplines, i.e., fields to species delimitation and adapt terms from
of study, has been called combined (38), mul- systems biology (29) to term these the dis-
tidisciplinary (55), multidimensional (76), col- covery and hypothesis-driven approaches. In
laborative (18), or integrative (12, 15, 51, 62, the discovery approach, specimens are an-
73) taxonomy. We use the term integrative tax- alyzed without prior hypotheses about the
onomy and focus on species. species present—including their number—and

422 Schlick-Steiner et al.


ANRV397-EN55-22 ARI 10 November 2009 11:17

hypotheses about the species present follow SURVEY OF ARTHROPOD


from the data (specimens). An example would LITERATURE
be to subject population genetics data to clus-
We used the ISI Web of KnowledgeSM to sur-
ter analysis (16). In the hypothesis-driven ap-
vey published studies from 48 journals, from
proach, the set of specimens is used to test prior
1977 to 2008 (for the journals and search terms
hypotheses about the existence of species, as
used in the ISI search, and for the complete
when a species delimitation hypothesized from Supplemental Material
list of studies selected, see the Supplemen-
morphology is tested using population genetics
tal Material (follow the Supplemental Mate-
data.
rial link from the Annual Reviews home page
By discipline we understand a field of study,
at http://www.annualreviews). One hundred
such as the study of nuclear DNA, ecology, or
eighty-four studies were selected that reported
morphology; frequently, we refer to a discipline
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arthropod diversity at the species level using


in a short form, e.g., nuclear DNA. A disci-
more than one discipline, and we analyzed the
pline is termed conclusive for a particular set
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

data from the various disciplines separately; if


of specimens when its delimitation hypothesis
a taxonomic problem was treated in more than
is significant, and when more than one data set
one study, only the latest study was used if it
from the discipline has been analyzed (such as
reanalyzed the same data presented earlier.
morphological data for males and females), the
The arthropod classes covered were Insecta
same hypothesis is significant for all of them.
(n = 141 studies), Arachnida (n = 20), Mala-
The delimitation hypothesis is significant when
costraca (n = 13), Maxillopoda (n = 5), Bran-
more than 95% of the specimens fit it (a prag-
chiopoda (n = 4), Chilopoda (n = 1), and
matic level suggested; 72), in accord with the
Ostracoda (n = 1). The genera most ana-
significance cut-off specified for the data analy-
lyzed were Drosophila (n = 7 studies), Anopheles
sis method. A discipline is inconclusive for a set
(n = 6), Encarsia (n = 5), Chrysoperla (n = 4),
of specimens when its delimitation hypothesis is
and Heliconius (n = 3). About 3010 species were
not significant or when different data sets from
analyzed, the uncertainty stemming from unre-
the same discipline significantly support differ-
solved delimitation; we then adopted the con-
ent hypotheses.
servative view according to the latest author.
More than one discipline can be applied to
In Table 1, we classified the methods ap-
the same taxonomic problem, in which case
plied into 11 disciplines in order of frequency
agreement, partial agreement, or total disagree-
of use: morphology (qualitative or quantitative
ment over the number and demarcation of
analyses), mitochondrial DNA (sequencing,
species will emerge among disciplines. In case of
fingerprinting), nuclear DNA (sequencing of
agreement, all specimens are placed into species
one or more loci, fingerprinting, genotyping),
in the same way by the disciplines applied. With
ecology (habitat; ecological niche; pathogen,
partial agreement, disciplines agree for some of
symbiont, host, or foodplant association),
the hypothesized species, but not for others.
enzymes, behavior (mating-related, social, or
With total disagreement, disciplines disagree
interspecific behavior), reproductive compat-
for all hypothesized species. Disagreement can
ibility, life history (spatiotemporal, physio-
be of different types: Disciplines can either dis-
logical, reproduction-related, or social traits),
agree over the number of species, or agree over
cytogenetics (karyology, DNA content), chem-
the number of species but disagree over the
istry (cuticular hydrocarbons, sex pheromones,
placement of specimens into species. Arriving
venoms), and whole genome scans (amplified
at a final delimitation hypothesis then involves
fragment length polymorphism, random
deciding which of the hypotheses supported by
amplification of polymorphic DNA). The
conclusive disciplines are plausible and which
number of disciplines ranged from two to eight
are implausible.
per study. Discovery (hypothesis building)

www.annualreviews.org • Integrative Taxonomy 423


ANRV397-EN55-22 ARI 10 November 2009 11:17

Table 1 Performance of disciplines in the survey of arthropod literature


Species delimitation hypotheses
Delimitation Failure Performance
Disciplines Totala definitiveb ratec superior tod
Morphology 359 302 0.23 Ecology
Mitochondrial DNA 284 235 0.33 Ecology
Nuclear DNA 142 119 0.28 Ecology
Ecology 72 65 0.60
Enzymes 46 39 0.21 Ecology
Behavior 27 24 0.08 Ecology
Reproductive compatibility 25 22 0.23 –
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Life history 24 21 0.52 –


Cytogenetics 25 20 0.20 –
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

Chemistry 11 9 0.22 –
Whole genome scans 9 8 0.38 –

a
Total number of delimitation hypotheses.
b
Number of delimitation hypotheses for sets of specimens for which delimitation was thought definitive.
c
Portion of failure scores among delimitation hypotheses for sets of specimens for which delimitation was thought
definitive; e.g., 68 of delimitation hypotheses by morphology for the 302 sets of specimens for which delimitation was
thought definitive failed.
d
Failure rate significantly lower than that of compared discipline (Fisher’s exact test, α = 0.05, Bonferroni-Holm adjusted).

and hypothesis-driven approaches (hypothesis each contributing discipline as either success or


testing) were taken, either alone or in various failure. A discipline’s performance was scored
combinations. In the case of iterative analyses in as a success when the delimitation hypothesis
a study, we considered the results from the pri- it supported was identical to the definitive de-
mary and final analyses. For considering clades limitation reached at the end of the study. A
in phylogenetic reconstructions as significantly discipline’s performance was scored as a failure
supported, we applied a cut-off value for node when it was inconclusive or when the delimita-
support of >70 to bootstrapping results (26) tion hypothesis supported by it differed signif-
and >0.95 to posterior probabilities (28). icantly from the definitive delimitation, either
We extracted one delimitation hypothesis initially or on reanalysis.
per discipline for every set of specimens. The
number of sets of specimens per study was de-
termined by pairwise comparison of the results PRINCIPAL OUTCOMES OF
of all disciplines. One set of specimens com- USING MULTIPLE DISCIPLINES
prised all those hypothesized species over which
disciplines either agreed, or over which dis-
Agreement among Disciplines
agreement of one particular type emerged for a When multiple disciplines are used for analyz-
pairwise combination of disciplines. The num- ing a taxonomic problem, the clearest result
ber of delimitation hypotheses per study ranged is agreement among disciplines. In the survey,
from 2 to 24. In total, 1024 delimitation hy- such overall agreements emerged for 147 of
potheses were extracted for 353 sets of speci- 353 sets of specimens. Study authors considered
mens (Table 1). agreement as reason to regard a delimitation
When an author considered delimitation as hypothesis as plausible. Authors also explic-
definitive for a set of specimens (n = 296 sets itly or implicitly considered agreement among
of specimens), we evaluated the performance of disciplines as a stronger indication that the

424 Schlick-Steiner et al.


ANRV397-EN55-22 ARI 10 November 2009 11:17

Table 2 Decision-making process in choosing three disciplines for primary exploration


Suggested order of considering disciplines
Targeted contributionsa through answering Questions 1 to 4b
Phenotypic information; link to Linnean nomenclature Mo
Nuclear genetic information Nu → Wh → En
Complementary information Be → Cy → Ch → Mt → Re → Ec → Li
a
One discipline per targeted contribution is chosen.
b
See section Primary Exploration.
Abbreviations: Mo, morphology; Nu, nuclear DNA, either sequencing or genotyping; Wh, whole genome scans;
En, enzymes; Be, behavior; Cy, cytogenetics; Ch, chemistry, either cuticular hydrocarbons or pheromones;
Mt, mitochondrial DNA; Re, reproductive compatibility; Ec, ecology; Li, life history.
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evolutionary pattern had indeed been discov- disagreement among them. In the literature
ered than if data from only a single discipline survey, disagreements occurred for 206 of 353
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had been analyzed (25). sets of specimens. Given disagreement, one of


The plausibility of a delimitation hypothesis the delimitation hypotheses should be plausible
rises with the independence of the information and the other(s) implausible. To identify the
of the disciplines contributing to the finding. plausible hypothesis is challenging, requiring
Complete independence of different informa- an evolutionary explanation for disagreement
tion that relates to one and the same organism (Table 3) (44, 51, 57, 71). Once an explanation
is unachievable, considering that any given or- has been found, the conflicting delimitation
ganism has a single history (25), but our un- hypotheses can be qualified as plausible or
derstanding of the degree of independence is implausible (Table 3). We have noted that
incomplete. Integrative taxonomy has to oper- when disciplines agree about the species
ate with this uncertainty and assumptions from present, this conclusion can still be wrong. It
general biology are useful (Table 2). is also true that when there is disagreement
Of course, disciplines may agree but none of the disciplines may have inferred the
nonetheless be incorrect about the species in correct situation; thus, one might lead to the
nature. For example, two disciplines may sup- conclusion of one species, another that there
port the same two-species hypothesis, whereas are two, but in fact there are three in nature.
in fact only one species in nature is involved. Disagreement can lead to new evolutionary
This problem holds for any taxonomy and re- insights. It raises the number of promising
minds us that any species taxon, i.e., a taxo- study organisms, without which evolutionary
nomic construct assigned to the species cate- biology will stagnate (75), and facilitates access
gory, is a hypothesis and should not be seen to a range of questions for in-depth analysis
as true even if well-supported (47). This risk (Table 3) that thus potentially lead to “in-
cannot be avoided, but it is arguably lowered triguing insights” (19). Integrative taxonomy
the more the information from multiple disci- profits through a reverse-flow effect: The
plines is independent. In practical terms, agree- evolutionary explanations at hand for resolving
ment means the link between a species taxon disagreements become more complete and
and the evolving group, i.e., the species in na- better founded. The large proportion of
ture, is the closest that can be made from cur- disagreements in our literature survey sug-
rent knowledge. gests that irregular evolutionary patterns and
processes that shape species might be more
common than we appreciate and may require Species taxon:
Disagreement among Disciplines several disciplines to uncover.
taxonomic construct
assigned to species
The application of multiple disciplines be- In practical terms, the resolution of dis- category
comes more complicated when there is agreement marks situations in which use of a

www.annualreviews.org • Integrative Taxonomy 425


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Table 3 Evolutionary explanations for disagreements among disciplines, detailed questions potentially resolvable, and operational priority of disciplines,
exemplified by morphology, nuclear DNA, and mitochondrial DNAa
ANRV397-EN55-22

Operational priority of disciplines, depending on the particular disagreement


ARI

Evolutionary Detailed questions potentially resolvable


explanation through the integrated data Mo Nub Mt Mo Nu Mt Mo Nu Mt
d

426
Recent speciation Allopatric? Parapatric? Peripatric? Sympatric? c    
Ecological? Allochronic? Mediated by
endosymbionts? Sexual selection?
Hybridization Recent? Ancient? Hybrid speciation?     
Reinforcement? Lack of selection against
10 November 2009

hybridization? Selection for hybridization?


Disruptive selection? Sexual selection?

Schlick-Steiner et al.
11:17

Mediated by endosymbionts? Paternal


leakage? Genome organization?
Intraspecific Sympatric? Geographic? Ecological?     
morphological Alternative reproduction strategies?
variation Phenotypic plasticity? Selection for
accelerated morphological evolution?
Disruptive selection?
Cryptic species, Morphological stasis? Convergent evolution? 
speciation not Parallel evolution? Sexual selection?
recent Stabilizing selection? Mimicry?
Substitution Genome organization?  
saturation
Incomplete lineage Recent vicariance? Balancing selection?    
sorting Peripatric speciation? Population sizes?
Selective sweep Genome organization? Mediated by  
endosymbionts? Population sizes?
Mt substitutions Population sizes? 
accelerated by
endosymbionts
Pseudogenes Genome organization?  

a
Based on the arthropod literature survey. Each row illustrates up to three scenarios based on morphology (Mo), nuclear (Nu) genes, and mitochondrial (Mt) genes. For each scenario
consideration of the evolutionary processes listed leads to rejection of the hypotheses for the disciplines with open boxes; checked boxes indicate disciplines whose hypotheses remain plausible.
b
Any nuclear gene which resolves at species level but has a lower substitution rate than mitochondrial DNA.
c
After invoking the evolutionary explanation for disagreement, the hypothesis supported by the discipline is qualified as implausible.
d
After invoking an evolutionary explanation for disagreement, the hypothesis supported by the discipline is qualified as plausible and the discipline is given priority operationally over disciplines
supporting an implausible hypothesis(es).
ANRV397-EN55-22 ARI 10 November 2009 11:17

single discipline would potentially have failed, using several disciplines for a problem because
by yielding an implausible hypothesis. The next only then can incongruence be detected.
practical question is whether there is any silver- In particular, two sources of information
bullet discipline for taxonomy, i.e., one that have been much contrasted: morphology and
rarely results in implausible hypotheses, the ap- genetics. Indeed, genetic methods have dra-
plication of which would render application of matically improved taxonomic insight (5, 25).
other disciplines redundant. However, as Hillis (25) noted, “collaborations
between morphological and molecular system-
atists often produce analyses that transcend the
usefulness of separate studies.” The failure rates
EVALUATION OF THE of morphology and the various genetic disci-
PERFORMANCE OF plines in our literature survey (Table 1) confirm
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SINGLE DISCIPLINES that neither should be used as a single informa-


The failure rates of the 11 disciplines in the tion source. This conclusion agrees with recent
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

literature surveyed ranged from 0.08 to 0.60; assertions that genetics may distort taxonomy
5 disciplines have statistically significantly when other data are neglected (15, 36, 40, 44,
better performance when compared with 65, 67). We conclude that there is no single
ecology (Table 1). Conclusions from these silver-bullet discipline and that integrated use
failure rates should take account of additional of several disciplines is needed to guard against
considerations. First, improved data genera- single-discipline failure.
tion and analysis methods might decrease a
discipline’s failure rate, such as for ecological
niche modeling in ecology (48, 49, 60) or A PROTOCOL FOR
geometric morphometrics in morphology (42). INTEGRATIVE TAXONOMY
Second, more rigor in applying a consistent Taxonomy is a decision-making process, and
approach might decrease a discipline’s failure more decisions are necessary when more than
rate. Third, the failure rate may not perfectly one discipline is used. Our survey of the arthro-
reflect the performance of a discipline because pod literature found inconsistencies in how de-
it was not consistent across studies, whether cisions were made, and the justification for
or not reanalysis of data from a discipline that how decisions were made was often vague, as
had been inconclusive or that had resulted in noted elsewhere (8, 70). We used conclusive el-
an implausible delimitation hypothesis was ements of the studies surveyed and present a
attempted. Careful reanalysis can be successful, general protocol for integrative taxonomy. Nar-
as shown for morphology (21, 41, 42, 56). row guidelines may not be universally applica-
Fourth, if a discipline is sufficiently decisive, ble (57, 62), and hence the protocol does not in-
its hypothesis might be plausible even if it clude rules other than taking decision-making
disagreed with one supported by many other steps in a particular order. Figure 1 as well
disciplines, a possibility requiring a comparison as the Worked Examples (follow the Supple- Supplemental Material
of statistical support across disciplines, imprac- mental Material link from the Annual Reviews
tical at present. Fifth, if a discipline is generally home page at http://www.annualreviews.org)
deployed for particularly difficult problems, illustrate how the protocol is used. The exam-
its failure rate may be inflated. Sixth, the true ples are hypothetical in that in each of them a
failure rate may be higher, as when disciplines range of situations from multiple separate stud-
agree on an incorrect solution. The first and ies is projected onto imaginary species, but they
second considerations indicate that the picture are realistic with regard to the general natural
could change in the future, but the observed history of the insects used.
failure rates reflect current practice. The other The overarching idea of the protocol is that
considerations all indicate the superiority of information from different sources should first

www.annualreviews.org • Integrative Taxonomy 427


ANRV397-EN55-22 ARI 10 November 2009 11:17

Researcher bias in decision making


Choice of study system
No researcher bias in decision making

Choice of: three disciplines including Choice of: one additional discipline
data generation methods including data generation method
+ species concept + species concept for all disciplines
+ delimitation criteria + delimitation criteria for all disciplines

Sequential exploration
Primary exploration

+ data analysis methods + data analysis methods


Further samples available?**

Further samples available?**


Data generation, Data generation,
Data generation, three disciplines
additional discipline all disciplines
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Discipline by discipline data analysis Discipline by discipline data analysis


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+ delimitation hypotheses elaboration + delimitation hypotheses elaboration

No Yes
No Yes

Inconclusive Conclusive Conclusive Inconclusive


discipline(s) discipline(s) discipline(s) discipline(s)

** Applicable only if inconclusiveness is due to


More than one One or none lack of significance of delimitation hypothesis

Further discipline(s) available?


Agreement Partial agreement; Disagreement; potential
conclusive disciplines

= plausible hypothesis set-of-specimens splitting set-of-specimens splitting


Comparison of

No Yes
No evolutionary
Evolutionary explanation Evolutionary explanation
explanation

Priority of discipline(s) with plausible


hypothesis over discipline(s) with
implausible hypothesis/es

Choice of data analysis method(s)


for hypothesis-driven approach
characterization
Integrated

Reanalysis of data from inconclusive


discipline(s) and/or discipline(s)
supporting implausible hypotheses

Characterization by disciplines supporting plausible


hypothesis either initially or on reanalysis
If applicable

Nomenclatural consequence(s) No delimitation

Figure 1
Protocol for integrative taxonomy.

428 Schlick-Steiner et al.


ANRV397-EN55-22 ARI 10 November 2009 11:17

be used separately and then integrated. Thus, 0.027 represents an acceptable compromise
we did not consider the total evidence ap- between practical constraints and power of
proach that submits data from different disci- resolution.
plines to combined analysis (31), although it The above consideration rests on indepen-
is sometimes used in species delimitation (68). dence of the disciplines chosen, and the actual
However, the approach either does not explore but unknown error rate will be higher when
whether data from different sources agree or they are not independent. Thus, we suggest
disagree, or does so but nevertheless uses dis- choosing one discipline each for targeting phe-
agreeing data for elaborating one hypothesis. notypic, nuclear genetic, and complementary
information (Table 2). Our suggestion to al-
ways choose morphology for obtaining pheno-
Choice of Study System typic information flows from the ease of obtain-
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Using several disciplines rather than just one ing morphological information, compatibility
costs more; hence problems for integrative tax- with past taxonomic practice, the need to assess
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

onomy should be carefully chosen. Examples morphology as a discriminator in any case and,
include (a) longstanding taxonomic disputes, for at least some years to come, better access for
(b) ambiguous delimitation in morphology- most people to the biological knowledge tied to
based revisionary work, (c) pronounced life- names. Both genetics and morphology should
history variability of or broad geographic or be included in the first set of disciplines because,
ecological space occupied by nominal species, on the one hand, species are genetic and not
(d ) biodiversity hotspots, and (e) outstanding morphological entities, and on the other hand,
importance of organisms to progress in other morphological identification is generally much
fields. easier if it is possible at all.
The decision-making process we suggest for
choosing the other two disciplines allows for
Primary Exploration the flexibility needed across taxa. On the basis
The primary exploration consists of several of the results in Table 1 and general method-
steps that are run through in turn. ological considerations (4, 19, 21, 35, 39, 40, 42,
48–52, 57, 60), we suggest a particular order of
Choice of disciplines. We recommend considering disciplines within targeted contri-
choosing three disciplines because, given butions (Table 2). For a discipline to be chosen,
the mean failure rate of single disciplines of four questions need to be answered positively;
Table 1, 0.30, the combination of two disci- if the list of disciplines for any of the three tar-
plines should result in an average error rate of geted contributions becomes exhausted without
0.09, and the combination of three disciplines positive answers, the problem cannot be solved
in an average error rate of 0.027. These average under the protocol. Question 1: Is the disci-
error rates represent those instances when pline actually or potentially established for the
disciplines agree but nonetheless are incorrect organism? Question 2: Has the discipline suc-
about the species in nature. On the one hand, cessfully resolved species-level problems in re-
the estimates are overly pessimistic in that they lated organisms? Question 3: Are the existing
consider the case of all disciplines settling on samples adequate (type of preservation, living
the same wrong result out of the many possible organisms if necessary) or, if not, can new sam-
ones; on the other hand, the estimates are ples be collected? Question 4: Are the necessary
overly optimistic in that they do not account resources available?
for those instances when disciplines disagree The choice of disciplines then entails choos-
and none of them is correct about the species ing the best mode of generating data for
in nature; neither inaccuracy can be quantified. each. Characters should be sought that delimit
We suggest that the approximate error rate of species unambiguously. Discrete characters

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ANRV397-EN55-22 ARI 10 November 2009 11:17

have better ease of use but therefore are likely criteria for various disciplines. However, the
to have already been studied, so that new quan- unified species concept (13) is sufficiently ro-
titative characters will often be needed for per- bust to accommodate any delimitation crite-
sistent taxonomic problems, as noted for mor- rion; thus, using a phenotypic distinctness cri-
phology (56, 69, 72). Reasonably high numbers terion, this concept readily handles discrete as
of characters varying in state between speci- well as continuous characters (43, 56).
mens should be sought so that a subset can be Some criteria can be applied only in a
selected if reanalysis is needed. hypothesis-driven approach (hypothesis test-
ing), meaning that the choice of taking a discov-
Choice of species concept. The species con- ery (hypothesis building) or a hypothesis-driven
cept must be applicable to data from the three approach restricts the criteria applicable. There
disciplines chosen. Different species concepts is no alternative to the discovery approach when
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focus on different aspects of species. No species there is no adequate prior hypothesis, but this
concept is perfect when applied to nature, i.e., approach is also appropriate if the existing hy-
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

every concept will in some instances lead to am- potheses are inadequate. Given that it may not
biguities in species delimitation (23, 24), but to be knowable whether any hypotheses are cor-
increase the comparability of species taxa (66), rect under the hypothesis-driven approach, the
it would be desirable that all taxonomists agree discovery approach may be more appropriate in
on one concept. Agreement on one concept is general because it has the potential to use the in-
unrealistic, though, given the contentions about formation available when inferring the number
species concepts (10, 23). A less strict version of and demarcation of species present more fully
standardization may arise from the notion that than does the hypothesis-driven approach (43,
all species concepts have a common core (23). 63). An erroneous prior hypothesis might ap-
Thus, delimitation hypotheses can be built un- pear to be corroborated under the hypothesis-
der one primary, unified species concept lacking driven approach (because this approach chooses
defined properties (13) with the justification of between hypotheses), even if the discipline used
the delimitation based on any of the properties for hypothesis testing would delimit the actual
of species that other species concepts consider. species in nature when analyzed in a discovery
approach. We thus doubt the wisdom of sug-
Choice of delimitation criteria. Delimita- gestions to use one discipline for building a hy-
tion criteria are empirical methods (57) used pothesis (e.g., morphology, 12; DNA, 63) and
for translating species concepts into the logic the others for testing it, and, instead, suggest
of data analysis and interpretation and can dif- applying the discovery approach whenever fea-
fer among disciplines; for example, a criterion sible for a discipline.
under the genotypic cluster concept is the oc-
currence of a lack of heterozygotes in sym-
patric populations (13). A delimitation crite- Choice of data analysis methods. A data
rion thus needs to be compatible with at least analysis method needs to be compatible with
one of the disciplines and the species concept a delimitation criterion chosen. We focus on
chosen. Intuitive criteria are often used in the discovery (hypothesis building) methods. Such
sense of verbal postanalysis arguments without methods are standard procedure for some dis-
explicit tests (8, our survey), but explicit crite- ciplines, such as in DNA-based phylogenetic
ria are needed for reproducibility and rigor (8, reconstruction (17), and are also available for
57). Sites & Marshall (57) reviewed 12 delimi- population genetics analysis (16). For all other
tation methods, and other formal criteria have disciplines, classical statistics offers a range of
been presented since, for example, for genetic ordination methods (53) as does machine learn-
(14, 46) and ecological data (48, 49, 60). Under ing (20), albeit the latter has as yet rarely been
many species concepts there are no delimitation used in species delimitation (59).

430 Schlick-Steiner et al.


ANRV397-EN55-22 ARI 10 November 2009 11:17

Data generation. The set of specimens for the of the following: (a) lower number of species,
disciplines used should be the same; that is, the (b) higher number of species, (c) same number
same specimens should be used throughout as of species but different placement of specimens
far as possible. Otherwise, disagreements may into species, or (d ) agreement (disagreement
be apparent rather than real or discrepancies between two disciplines can be accompanied by
may not be discovered. a further discipline agreeing with one of them,
Worked Examples 2–4). Splitting is necessary
Hypothesis elaboration. Using the delimita- (Worked Example 4) if, from the perspective
tion criteria and the data analysis methods cho- of one of any two disciplines compared, any
sen, delimitation hypotheses are built (discov- combination of a through c occurs for differ-
ery approach) or tested (hypothesis-driven ap- ent parts of the set of specimens. Splitting then
proach) for all three disciplines separately. aims at sets of specimens with only one type of
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disagreement, and for each of them the proto-


Assessment of conclusiveness of disciplines. col continues separately.
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

To reduce the error rate of the procedure, it is For sets of specimens with disagreement, a
desirable to minimize the number of inconclu- resolution is sought. Resolution cannot be ob-
sive disciplines. A discipline that is inconclusive tained by a simple tally of how many disciplines
owing to nonsignificance of a delimitation support each delimitation hypothesis. Rather,
hypothesis may become conclusive if further the evolutionary processes known for each
specimens are sampled; these specimens discipline are examined to see if any of these
then should also be examined for the other processes could explain why the delimitation
disciplines (Worked Example 2). A discipline hypothesis from a discipline disagrees with that
that stays inconclusive is considered again in from another discipline (see Table 3 for exam-
the integrated characterization. If two or all ples). A few quantitative methods are available
disciplines stay inconclusive, the procedure for this step, including one to test convergence
continues with sequential exploration. in morphology (71) and one to distinguish
between hybridization and incomplete lineage
sorting in sequence data for large numbers of
Comparison of Conclusive Disciplines loci (27). If an evolutionary explanation can be
The delimitation hypotheses from all con- found, hypotheses are qualified as plausible or
clusive disciplines are compared. In case of implausible. Disciplines that support the plau-
agreement (Worked Example 1), the delimi- sible delimitation hypothesis are given priority
tation hypothesis is considered plausible, with operationally over disciplines that support im-
the number of conclusive disciplines determin- plausible ones. If no evolutionary explanation
Supplemental Material
ing the error rate. Disciplines that resulted in can be found, the procedure continues with
the plausible hypothesis are considered again sequential exploration (Worked Example 3).
in the integrated characterization.
With partial agreement, the part of the set of
specimens for which all disciplines agree is split Sequential Exploration
operationally from the part with disagreement Once sequential exploration has become nec-
(Worked Example 3). For the part with agree- essary, the procedure follows the rationale of
ment the procedure continues as above. The sequential analysis in statistics (22), where the
following pertains to the disagreement part of final number of observations is not fixed in ad-
partial agreements and to total disagreement: vance but where observations are added until
No splitting of the set of specimens is neces- a predefined stopping rule applies. Here, the
sary (Worked Example 2) if, for the whole set stopping rule is resolution of disagreement or
of specimens from the perspective of one of exhaustion of the number of disciplines appli-
any two disciplines compared, there is only one cable or affordable, whichever applies first.

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ANRV397-EN55-22 ARI 10 November 2009 11:17

One additional discipline is chosen, as inde- of characters (53). Classification methods can
pendent from the other disciplines in the infor- be used for the latter purpose as well, by ex-
mation revealed as possible. Species concept, ploratory omission of some of the characters,
Nomenclature:
system of scientific delimitation criteria, and data analysis meth- as through an exhaustive process using combi-
names for taxa and the ods are chosen. Data are generated by the addi- nation procedures to identify the optimal com-
provisions for the tional discipline, aiming at sample congruence bination of characters for discrimination (41).
formation, treatment, across all disciplines. Discipline by discipline, In morphology, correction for allometry is pos-
and use of those names
data analysis follows for hypothesis elabora- sible at this stage (21, 56), in combination with
tion. Conclusiveness of disciplines is assessed. any of the methods described above.
In case of inconclusiveness due to nonsignifi- If any characters from an inconclusive dis-
cance of a delimitation hypothesis, additional cipline, or even one that led to an implausi-
samples are analyzed, if available, by all dis- ble hypothesis, support the ultimate plausible
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ciplines. Disciplines that stay inconclusive are hypothesis, then they are available for charac-
considered again in the integrated characteri- terizing species. If no characters of a discipline
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

zation. If there is more than one conclusive dis- support the plausible hypothesis, the discipline
cipline, their hypotheses are compared. If no is not used further (Worked Examples 3–4).
evolutionary explanation for the disagreement
can be found, or if only one or no disciplines
Supplemental Material are conclusive, the sequential exploration starts Nomenclatural Consequences
over again (Worked Example 3). In taxonomy, any species delimitation and
characterization is available, and thus open to
further scrutiny, only if it is associated with a
Integrated Characterization formal name published in accord with nomen-
When the three disciplines of the primary ex- clature (30), such publications having “eternal
ploration are conclusive and their hypotheses life” (6). Thus, if the analyses we propose reveal
plausible, the information from all disciplines the need for nomenclatural changes, these must
is presented in such a way that it best character- be published. This activity is straightforward
izes the species. When disciplines from primary if current nomenclature is oversplit, i.e., when
and/or sequential exploration do not support a nominal species needs to be sunk into syn-
the plausible delimitation hypothesis (inconclu- onymy; however, if nomenclature is undersplit,
sive or implausible hypotheses), data analysis analysis of type specimens is necessary. In any
methods are chosen for hypothesis-driven re- case, adherence to standard nomenclatural
analysis. Reanalysis is performed to see if the rules (30) is essential. The findings could reveal
plausible hypothesis accords with the data of that an available junior synonym can be rescued
those disciplines (at least as well as the implau- from synonymy or that the species delimited
sible hypothesis if a discipline did not fail be- needs to be described as a new species. When it
cause of inconclusiveness). Reanalysis can thus is possible to include morphology in the inte-
reveal that all or some of the data from a disci- grated characterization, there is a morphologi-
pline which failed in the first place can never- cal system at hand for type analysis; otherwise,
theless be used for the integrated characteriza- in many cases, but certainly not all, molecular
tion (Worked Examples 2–4). information can be obtained from types (11).
Methods used here include classification
methods, for example from classical statistics
or machine learning (20, 53), ecological niche No Delimitation
modeling (48, 49, 60), and methods to search for Cases may remain where the supply of dis-
characters that mediate information in accord ciplines is exhausted without delimitation, al-
with the plausible delimitation hypothesis, such though we are not aware of any. This would
as techniques to estimate and test association not be a negative result in the sense of failing

432 Schlick-Steiner et al.


ANRV397-EN55-22 ARI 10 November 2009 11:17

to contribute to science. Rather, these would be two-species hypothesis, but nuclear DNA
cases where the nature of the evolving groups and chemistry support a one-species hy-
is poorly understood and would demarcate the pothesis. Because there is total disagree-
limits of present integrative taxonomy. Such ment of one particular type, the set of
cases should be documented carefully. In-depth specimens does not need to be split and
analysis by evolutionary biology could reveal a the procedure continues with seeking
hitherto unrecognized evolutionary pattern or an evolutionary explanation for the dis-
process which would then become available as agreement. Intraspecific dimorphism of
an evolutionary explanation for disagreements workers is invoked as the evolutionary
in general. explanation for the disagreement. The
morphology-based hypothesis is con-
sidered implausible, and nuclear DNA
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EXAMPLE and chemistry are given priority over


For an illustration of how the protocol is used, morphology. Evolutionary biology prof-
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

consider the following hypothetical situation its from the resolution of disagreement,
(see Worked Example 2). in that Novomyrmex ants had not been Supplemental Material
 Choice of study system: Criterion (a). known to show intraspecific dimorphism;
There is a longstanding dispute whether in-depth analysis of whether the worker
the ant species Novomyrmex secundus is in- dimorphism is coupled with alternative
deed a species separate from N. primus. reproductive strategies by small and large
 Primary exploration: Morphology, nu- queens can now follow.
clear DNA, and chemistry are chosen  Integrated characterization: The
as disciplines, with traditional morpho- hypothesis-driven approach (hypothesis
metrics (10 continuous characters), mi- testing) is taken to test whether, despite
crosatellite genotyping (10 loci), and lack of support for the plausible hypothe-
analysis of cuticular hydrocarbons by gas sis in the discovery approach (hypothesis
chromatography coupled with mass spec- building), the morphometric data at
trometry as modes of generating data. hand can be used to characterize the
The unified species concept (13) is cho- species as one entity. With an association
sen, and the delimitation criteria to be test, those morphometric characters
applied are phenotypic distinctness for that contributed most strongly to the
morphology and chemistry, and repro- grouping of specimens as two entities
ductive isolation for nuclear DNA. Dis- are singled out and omitted from the
covery (hypothesis building) data analysis data set. In a reanalysis of the remaining
methods are selected for the three dis- characters by the discovery data analysis
ciplines. The same 50 worker ants are method used in the primary exploration,
analyzed under all disciplines, and de- all 100 workers plot as one group. The
limitation hypotheses are built for the remaining characters are thus used for
disciplines separately. Nuclear DNA and the morphological characterization of
chemistry are conclusive, but morphol- the species, and the ones omitted are
ogy is inconclusive, in that the statisti- labeled as indicative of the dimorphism.
cal significance level is not met. There- The complete microsatellite and cu-
fore, 50 further workers are sampled for ticular hydrocarbon data sets are used
all three disciplines, resulting in conclu- for the nuclear genetic and chemical
siveness of all of them. characterization, respectively.
 Comparison of conclusive disciplines:  Nomenclatural consequences: Novo-
Total disagreement of one particular myrmex secundus is synonymized under
type emerges: morphology supports a N. primus.

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ANRV397-EN55-22 ARI 10 November 2009 11:17

RATIONALES applies, for example, to morphology (57, 70).


Subjective assessments, especially of shape, are
Widely recognized general rationales apply. A
still practiced (42) and quantitative approaches
comprehensive sample in terms of intraspecific
frequently do not assess continuous character
variation including ecology- and geography-
states for persistent taxonomic problems. Well-
related variation is paramount for approach-
established methods have not been capitalized
ing congruence between recognized and actual
on: Geometric morphometrics allows capturing
species. Voucher deposition and accessibility of
shape in a refined way but has only recently been
primary data are important for follow-up stud-
applied to arthropod taxonomy (42). The de-
ies and meta-analyses. Yet there is an additional
velopment of formal species delimitation crite-
aspect that has received scant attention.
ria received negligible attention by the system-
atic biology community compared with phylo-
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Clarity in Researcher Bias


genetic reconstruction (57, 70), and a broad,
It has been deplored that “taxonomy is not an
empirical cross-validation of criteria is much
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

exact science” (37). For alpha taxonomy, this


needed. Standardized methods for finding evo-
is true in two respects: Any attempt to catego-
lutionary explanations for disagreements would
rize the diversity of evolving life into species
reduce researcher bias as would methods for
taxa is necessarily imperfect and oversimplified
comparing statistical support across disciplines.
(24), and researcher bias is unavoidable in some
steps of the taxonomic decision-making process
(24, 57). Such researcher bias is inherent to any Taxonomic Training for
approach in taxonomy including DNA-based Evolutionary Biologists
taxonomy, in which, for example, the selection
Practicing integrative taxonomy relies on a
of genes to be sequenced involves subjectivity
strong infusion of evolutionary biological
(36). Yet, honest assessments of uncertainties of
thinking and many evolutionary biologists ad-
methods have generally been lacking (1, 24).
dress species-level problems. When the need
For integrative taxonomy, we have identi-
for nomenclatural changes is revealed, nontax-
fied steps involving researcher bias in Figure 1.
onomists, however, usually shrink from pub-
As the decisions in these steps bear on all fol-
lishing them; in our literature survey, this ap-
lowing steps, the delimitations by different tax-
plied to 75 of 123 sets of specimens. Reasons
onomists may differ. These uncertainties must
for this reluctance may include lack of exper-
be addressed by comprehensively documenting
tise and poor appreciation of the importance
how a particular decision was made. Such clar-
of nomenclature. Solutions include collabora-
ity is paramount for transparency and repro-
tion with trained taxonomists or taxonomic
ducibility of the procedure and thus for revision
training.
of species taxa and cross-validation and fine-
Collaborations between evolutionary bi-
tuning of methods. At present, there is often lit-
ologists and taxonomists are truly feasible.
tle clarity. For example, in our arthropod litera-
However, the work force of taxonomists is
ture survey, a mere 33 of 184 studies mentioned
small, between 6000 (74) and 10,000 (61)
the species concept applied, as noted elsewhere
worldwide. Thus, serious taxonomic training
(32).
for evolutionary biologists who delimit species
is important. Such training helps alleviate the
THE FUTURE OF INTEGRATIVE
taxonomist shortage and increases research out-
TAXONOMY: AGENDA
put in terms of nomenclatural consequences.
Methodological Progress Needed Also, taxonomy then becomes increasingly un-
on Many Frontiers derstood in its logic and difficulties by a broader
Data generation and analysis methods are of- community, rather than being a term to be
ten underexplored. In contrast to genetics, this avoided in grant applications or when aiming

434 Schlick-Steiner et al.


ANRV397-EN55-22 ARI 10 November 2009 11:17

at high-ranking journals (3). Concerning the current funding policy has changed to reflect
latter we may approach a trend reversal as how evolutionary biological research can po-
shown by occasional taxonomic papers re- tentially contribute to taxonomy. This will be
sulting from multiple-discipline delimitation an additional incentive for both communities
appearing in high-impact journals (7). to coordinate their efforts.
Geopolitical balance is needed. To obtain
a comparable state of taxonomy in various
Balanced Resource Allocation regions and thus a sensible census of the
If the profound implications for biology of in- Earth’s species, integrative taxonomy will have
tegrative taxonomy are to be realized, balanced to choose study systems relating to biodiversity-
resource allocation to both taxonomy and evo- rich, developing nations with higher frequency
lutionary biology is necessary (54, 65). To facil- over study systems relating to biodiversity-
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itate this, taxonomists also must acknowledge poor, developed nations (64). To achieve this,
that the current taxonomy crisis is due partly international collaborations are needed, and al-
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

to them (6). It is fair that taxonomists have though examples exist (76), they mark just the
to compete actively for funding—but only if beginning of the journey.

SUMMARY POINTS
1. Using multiple disciplines to solve taxonomic problems helps avoid failure inherent to
single disciplines and increases rigor in species delimitation.
2. For procedural consistency in decision making, a flexible protocol is presented based on
the use of information from every discipline separately.
3. Morphology should always be used for obtaining phenotypic information, alongside
disciplines revealing nuclear genetic and complementary information.
4. Disagreement among disciplines is resolved by seeking evolutionary explanations for
disagreement.
5. If no evolutionary explanation can be found, additional disciplines are added, one at a
time, until the disagreement has been resolved or no more disciplines can be used.
6. Explicitness in decision making is paramount to make researcher bias transparent.
7. For increased success of integrative taxonomy, methodological progress, taxonomic train-
ing, and balanced resource allocation will be vital.

DISCLOSURE STATEMENT
The authors are not aware of any affiliations, memberships, funding, or financial holdings that
might be perceived as affecting the objectivity of this review.

ACKNOWLEDGMENTS
For funding, BCS, FMS, and CS are grateful to the Austrian Science Fund (FWF), and RHC to
the Australian Research Council (DP0665890). BCS and FMS obtained Schrödinger grants (FWF
J2639-B17 and J2642-B17) for a stay in RHC’s lab in Townsville. We thank Nora J. Besansky, Joel
Cracraft, Graham W. Elmes, L. Lacey Knowles, Karl Moder, David R. Nash, and F. James Rohlf

www.annualreviews.org • Integrative Taxonomy 435


ANRV397-EN55-22 ARI 10 November 2009 11:17

for helpful discussion, and the Editor and two anonymous reviewers for inspiring criticism. BCS
and FMS contributed equally to this review.

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438 Schlick-Steiner et al.


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Annual Review of
Entomology

Contents Volume 55, 2010


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Frontispiece
Mike W. Service p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p xiv
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

The Making of a Medical Entomologist


Mike W. Service p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 1
Ecology of Herbivorous Arthropods in Urban Landscapes
Michael J. Raupp, Paula M. Shrewsbury, and Daniel A. Herms p p p p p p p p p p p p p p p p p p p p p p p p p p19
Causes and Consequences of Cannibalism in Noncarnivorous Insects
Matthew L. Richardson, Robert F. Mitchell, Peter F. Reagel,
and Lawrence M. Hanks p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p39
Insect Biodiversity and Conservation in Australasia
Peter S. Cranston p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p55
Ekbom Syndrome: The Challenge of “Invisible Bug” Infestations
Nancy C. Hinkle p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p77
Update on Powassan Virus: Emergence of a North American
Tick-Borne Flavivirus
Gregory D. Ebel p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p95
Beyond Drosophila: RNAi In Vivo and Functional Genomics in Insects
Xavier Bellés p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 111
Dicistroviruses
Bryony C. Bonning and W. Allen Miller p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 129
Olive Fruit Fly: Managing an Ancient Pest in Modern Times
Kent M. Daane and Marshall W. Johnson p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 151
Insect Silk: One Name, Many Materials
Tara D. Sutherland, James H. Young, Sarah Weisman, Cheryl Y. Hayashi,
and David J. Merritt p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 171
Bayesian Phylogenetics and Its Influence on Insect Systematics
Fredrik Ronquist and Andrew R. Deans p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 189
Insect Fat Body: Energy, Metabolism, and Regulation
Estela L. Arrese and Jose L. Soulages p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 207

vii
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Sex Differences in Phenotypic Plasticity Affect Variation in Sexual Size


Dimorphism in Insects: From Physiology to Evolution
R. Craig Stillwell, Wolf U. Blanckenhorn, Tiit Teder, Goggy Davidowitz,
Charles W. Fox p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 227
Facultative Symbionts in Aphids and the Horizontal Transfer of
Ecologically Important Traits
Kerry M. Oliver, Patrick H. Degnan, Gaelen R. Burke, and Nancy A. Moran p p p p p p p p p 247
Honey Bees as a Model for Vision, Perception, and Cognition
Mandyam V. Srinivasan p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 267
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Invasion Biology, Ecology, and Management of the Light Brown Apple


Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

Moth (Tortricidae)
D.M. Suckling and E.G. Brockerhoff p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 285
Feeding Mechanisms of Adult Lepidoptera: Structure, Function, and
Evolution of the Mouthparts
Harald W. Krenn p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 307
Integrated Management of Sugarcane Whitegrubs in Australia:
An Evolving Success
Peter G. Allsopp p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 329
The Developmental, Molecular, and Transport Biology of Malpighian
Tubules
Klaus W. Beyenbach, Helen Skaer, and Julian A.T. Dow p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 351
Biorational Approaches to Managing Stored-Product Insects
Thomas W. Phillips and James E. Throne p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 375
Parallel Olfactory Systems in Insects: Anatomy and Function
C. Giovanni Galizia and Wolfgang Rössler p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 399
Integrative Taxonomy: A Multisource Approach to Exploring
Biodiversity
Birgit C. Schlick-Steiner, Florian M. Steiner, Bernhard Seifert,
Christian Stauffer, Erhard Christian, and Ross H. Crozier p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 421
Evolution of Plant Defenses in Nonindigenous Environments
Colin M. Orians and David Ward p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 439
Landscape Epidemiology of Vector-Borne Diseases
William K. Reisen p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 461
Role of Adhesion in Arthropod Immune Recognition
Otto Schmidt, Kenneth Söderhäll, Ulrich Theopold, and Ingrid Faye p p p p p p p p p p p p p p p p p p p p 485
Physical Ecology of Fluid Flow Sensing in Arthropods
Jérôme Casas and Olivier Dangles p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 505

viii Contents
AR397-FM ARI 12 November 2009 9:17

Managing Invasive Populations of Asian Longhorned Beetle and Citrus


Longhorned Beetle: A Worldwide Perspective
Robert A. Haack, Franck Hérard, Jianghua Sun, and Jean J. Turgeon p p p p p p p p p p p p p p p p p 521
Threats Posed to Rare or Endangered Insects by Invasions of
Nonnative Species
David L. Wagner and Roy G. Van Driesche p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 547
Malaria Management: Past, Present, and Future
A. Enayati and J. Hemingway p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 569
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Regulation of Midgut Growth, Development, and Metamorphosis


Raziel S. Hakim, Kate Baldwin, and Guy Smagghe p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 593
Annu. Rev. Entomol. 2010.55:421-438. Downloaded from www.annualreviews.org

Cellulolytic Systems in Insects


Hirofumi Watanabe and Gaku Tokuda p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 609

Indexes

Cumulative Index of Contributing Authors, Volumes 46–55 p p p p p p p p p p p p p p p p p p p p p p p p p p p 633


Cumulative Index of Chapter Titles, Volumes 46–55 p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 638

Errata

An online log of corrections to Annual Review of Entomology articles may be found at


http://ento.annualreviews.org/errata.shtml

Contents ix

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