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0022-538X/04/$08.00⫹0 DOI: 10.1128/JVI.78.20.11334–11339.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Severe acute respiratory syndrome coronavirus (SARS-CoV) is the pathogen of SARS, which caused a global
panic in 2003. We describe here the screening of Chinese herbal medicine-based, novel small molecules that
bind avidly with the surface spike protein of SARS-CoV and thus can interfere with the entry of the virus to
its host cells. We achieved this by using a two-step screening method consisting of frontal affinity chromatog-
raphy-mass spectrometry coupled with a viral infection assay based on a human immunodeficiency virus
(HIV)-luc/SARS pseudotyped virus. Two small molecules, tetra-O-galloyl--D-glucose (TGG) and luteolin, were
identified, whose anti-SARS-CoV activities were confirmed by using a wild-type SARS-CoV infection system.
TGG exhibits prominent anti-SARS-CoV activity with a 50% effective concentration of 4.5 M and a selective
index of 240.0. The two-step screening method described here yielded several small molecules that can be used
for developing new classes of anti-SARS-CoV drugs and is potentially useful for the high-throughput screening
of drugs inhibiting the entry of HIV, hepatitis C virus, and other insidious viruses into their host cells.
Severe acute respiratory syndrome (SARS) is a viral respi- propagation of virus at an early stage, thus minimizing the
ratory disease that spread to more than two-dozen countries in chance for the virus to evolve and acquire drug resistance.
Asia, North America, South America, and Europe in the Inhibitors of the entry of several important viruses have been
spring of 2003 (36, 49). Approximately 8,400 people worldwide developed. For example, a new class of virus entry inhibitors
suffered from SARS and more than 900 died according to a has been developed for the human immunodeficiency virus
report of the World Health Organization executive board on type 1 (HIV-1) (14, 32), and one of these, T20 (enfuvirtide), is
27 November 2003. A novel coronavirus, SARS-coronavirus now in clinical usage (14, 20, 23, 32). For the respiratory syn-
(SARS-CoV), was identified as the pathogen that caused cytial virus (RSV), the small molecules RFI 641 (33, 37) and
SARS (13, 26). SARS-CoV is highly infectious and is trans- VP-14637 (11) have been developed to inhibit its entry process.
mitted via the respiratory route (13, 15, 26, 36, 49). Although For herpes simplex virus, entry inhibitors such as FGF4 signal
the first outbreak is over, it is possible that even a low-level peptide (4, 5) and n-docosanol (35) are under development.
epidemic or accidental infection, as recently happened in Sin- We have developed a two-step screening method combining
gapore and Taiwan, could cause a sudden worldwide epidemic. frontal affinity chromatography-mass spectrometry (FAC/MS)
At present, few drugs are available for treating SARS. Riba- and pseudotyped virus infection assay to search for drugs that
virin was initially used, but it proved to be barely effective and can interfere with the entry of SARS-CoV into host cells.
had serious side effects (25, 50). Cinatl et al. reported recently FAC/MS allows for competitive assays of interacting mole-
that interferon exhibited anti-SARS-CoV potency (8) and that cules, such as enzymes and ligands, as well as for a quick
glycyrrhizin had an anti-SARS-CoV activity with a 50% effec- analysis and direct presentation of the assay (6, 41, 42). Here,
tive concentration (EC50) of 300 mg/liter (364.5 M) (9). in the first step, we use the FAC/MS to perform high-through-
We have targeted our drug discovery to small molecules that put screening of small molecules that can bind with high affin-
can inhibit SARS-CoV from entering its host cells. Virus entry ity to the SARS-CoV S2 protein. The other rationale of our
is an attractive target step for therapy because it can block the study is that some of these S2-binding molecules may interfere
with the function of the S protein, thus preventing the SARS-
CoV from entering its host cells. To test this, we developed an
* Corresponding author. Mailing address for H. Deng: Department
of Cell Biology and Genetics, College of Life Sciences, Peking Uni- HIV-luc/SARS pseudotyped virus that can infect Vero E6 cells
versity, Beijing 100871, Peoples Republic of China. Phone: 8610-6275- resulting in the cellular expression of luciferase that can be
6474. Fax: 8610-6275-6474. E-mail: hongkui㛭deng@pku.edu.cn. Mailing detected by luminometry. Thus, as a second step, we used
address for X. Xu: College of Chemistry and Molecular Engineering, HIV-luc/SARS pseudotyped virus to check the function of the
Peking University, Beijing 100871, Peoples Republic of China. Phone:
8610-6275-7456. Fax: 8610-6275-1708. E-mail: xiaojxu@chem.pku.edu
small molecules obtained in the first step. This system is highly
.cn. sensitive, rapid, and reproducible; the materials are safe to
† L.Y., Z.L., and K.Y. contributed equally to this study. handle and can be used for high-throughput screening.
11334
VOL. 78, 2004 ENTRY INHIBITORS OF SARS-CoV 11335
We used the FAC/MS approach to screen small molecule was operated in the negative mode under the following conditions: spray tip
libraries consisting of extracts from 121 Chinese herbs, includ- potential, 5,000 V; nozzle potential, 100 V; detector voltage, 2,250 V; nozzle
temperature, 140°C; and quad temperature, 140°C. All of the other parameters
ing Prunella vulgaris and Saussurea lappa Clarks, that exhibited were set at the default values.
antiviral activities against HIV-1 (7), RSV (30), and hepatitis B The volume of the small molecules that bind to S2 protein (V), the volume of
virus (27). We identified two small molecules that bind avidly the nonbinding small molecules (V0), and the concentration of the bound small
to the SARS S2 protein and can interfere with the entry of molecules (C) were recorded. Using these data, we calculated the binding affinity
of the small molecules (Kd) to S2 protein according to the intercept in the
SARS-CoV into Vero E6 cells, with potent antiviral activi-
following liner equation (22):
ties against wild-type SARS-CoV with EC50 values of 4.5 and
10.6 M. 1 1 Kd 1
⫽ ⫹ 䡠
C共V ⫺ V0兲 Lt Lt C
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