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LESSON 1
Genetic Engineering
BEGIN
Genetic engineering is the direct manipulation of genes for practical purposes. In addition to
research, the applications of genetic engineering include the manufacture of hundreds of useful
products. Using the biochemical and mechanical tools of DNA technology, scientists can make
recombinant DNA in vitro. They can introduce the DNA into cultured cells that replicate the DNA
and may express its genes, yielding a desired product.
In this Module No. 1 you will be exploring diverse activities for you to gain awareness and
understanding about the processes involved in genetic engineering.
ASSESS
YOUR WHAT
TARGETS
YOU’VE LEARNED
At the end of this Module No 1, you should be able to:
In order to survive, man has successfully domesticated selected plants and animals. He has taken an
active part in choosing desired traits of plants and animals. Traits that were considered valuable (i.e. high fruit
yield; high milk production, etc.) were sought out and propagated. The processes involved may include
classical breeding practices such as controlled pollination of plants, and the mating of animals with desired
traits. In today’s modern science, molecular biology techniques are being employed in the insertion and
expression of proteins in different organisms for various purposes
DO THIS!
Venn Diagram
Classical
Modern Genetic
Breeding Similarities
Engineering
Lecturette No. 1
Classical breeding practices focus on the mating of organisms with desirable qualities.
Genetic engineering involves the use of molecular techniques to modify the traits of a target organism. The
modification of traits may involve: I. introduction of new traits into an organism II. enhancement of a present trait
by increasing the expression of the desired gene III. enhancement of a present trait by disrupting the inhibition
of the desired genes’ expression.
Lecturette No. 2
A general outline of recombinant DNA (Genetic Engineering Process) may be given as follows:
I. cutting or cleavage of DNA by restriction enzymes (REs)
II. selection of an appropriate vector or vehicle which would propagate the recombinant DNA ( eg.
circular plasmid in bacteria with a foreign gene of interest)
III. ligation (join together) of the gene of interest (eg. from animal) with the vector ( cut bacterial
plasmid)
IV. transfer of the recombinant plasmid into a host cell (that would carry out replication to make
huge copies of the recombined plasmid)
V. selection process to screen which cells actually contain the gene of interest
VI. sequencing of the gene to find out the primary structure of the protein
EXPLORE!
Directions: Following are the ways in which plasmids may be introduced into host organisms and Some methods
to screen recombinant cells, read and analyze the selection and do Task No. 3 below.
THREE (3) WAYS IN WHICH PLASMIDS MAY BE INTRODUCED INTO HOST ORGANISMS
1. BIOLISTICS. In this technique, a “gene gun” is used to fire DNA-coated pellets on plant tissues. Cells
that survive the bombardment, and are able to take up the expression plasmid coated pellets and
acquire the ability to express the designed protein.
2. PLASMID INSERTION BY HEAT SHOCK TREATMENT. Heat Shock Treatment is a process used to
transfer plasmid DNA into bacteria. The target cells are pre-treated before the procedure to increase the
pore sizes of their plasma membranes. This pretreatment (usually with CaCl2) is said to make the cells
“competent” for accepting the plasmid DNA. After the cells are made competent, they are incubated with
the desired plasmid at about 4°C for about 30min. The plasmids concentrate near the cells during this
time. Afterwards, a “Heat Shock” is done on the plasmid-cell solution by incubating it at 42°C for 1
minute then back to 4°C for 2 minutes. The rapid rise and drop of temperature is believed to increase
and decrease the pore sizes in the membrane. The plasmid DNA near the membrane surface are taken
into the cells by this process. The cells that took up the plasmids acquire new traits and are said to be
“transformed”.
3. ELECTROPORATION. This technique follows a similar methodology as Heat Shock Treatment, but, the
expansion of the membrane pores is done through an electric “shock”. This method is commonly used
for insertion of genes into mammalian cells.
ASSESS
REFLECT
Task No. 5: Fill Me Please!
What an exemplar performance! You did a great job in finishing this
module. Hopefully, you had an enjoying moments in this journey.
Congratulations!
After accomplishing series of Activities, fill in the blanks to
complete the sentences bel ow.
Genetic Engineering can be defined as
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________.
LESSON 2
APPLICATIONS OF RECOMBINANT DNA
BEGIN
In this lesson, you will be exploring diverse activities for you to gain awareness and
understanding about the applications of recombinant DNA.
YOUR TARGETS!
At the end of this Lesson 2, you should be able to:
The processes in the Central Dogma of Molecular Biology can be illustrated as: DNA (gene) - RNA
(transcript) - Protein (trait). Different organisms have different traits based on their genes (DNA sequences).
For example, frogs have antimicrobial peptides on their skin. Some jellyfish have proteins that allow them to
glow in the dark. Mutations in hemoglobin genes lead to anemia.
Based on the central dogma, if transcription and translation of genes lead to some traits, then the
insertion of certain genes in a given organism may provide it with new traits. This is the basis for the
development of genetically modified organisms (GMOs).
Procedure: Construct your own genetically modified organism. Make sure to indicate the following factors
in your design:
• Identify a special trait. (Ex. large fruit size)
• Identify a source organism. (Ex. Jackfruit/langka)
• Identify a target organism. (Ex. Aratilis)
• Identify the modified / added trait. (Ex. Langka-sized aratilis)
• Show a simple illustration of the processes involved and your product
After identifying the trait and the possible modification, answer the following questions below:
A. How do traits change properties?
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B. How useful is the application of recombinant DNA?
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C. List of examples of products from recombinant DNA technology.
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Conclusion (Task No.1):
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GENERAL BIOLOGY 2
Lecturette No. 1
There are many different traits that can be introduced to organisms to change their properties. The
following table shows examples of modified traits using cloned genes and their applications:
Lecturette No. 2.
PCR AMPLIFICATION
Once a desired trait is chosen, information must be acquired for either its detection or expression in
a given organism.
A. DETECTION
Some researchers may be interested in determining if a given gene/trait is available in a particular
organism. If no previous research provides this information, researchers may test the DNA of different
organisms for the presence of these specific genes. A technique that allows the detection of specific genes
in target organisms is called PCR.
GENERAL BIOLOGY 2
PCR amplification is an in-vitro method that simulates DNA replication in vivo. It utilizes a thermostable
(heat-resistant) DNA polymerase that builds single stranded DNA strands unto unwound DNA templates.
PCR uses repeated cycles of incubation at different temperatures to promote the unwinding of the DNA
template (~95°C); the annealing of a primer (a ~20bp oligonucleotide sequence (recall RNA primers in DNA
replication) onto the ssDNA template strand (~54 - 60°C); and the extension of the generated ssDNA strand
through the binding of complementary bases to the template strand (~72° C). The thermostability of the
polymerase allows it to survive the repeated cycles of denaturation, annealing and extension with little loss
of enzyme function. Each cycle of PCR doubles the amount of the target sequence. A typical PCR experiment
uses about 35 cycles of amplification. This increases the original amount of the target sequence by 235 (i.e.
~34 billion) times.
Gene detection by PCR involves the design of primers that would only bind to sequences that are
specific to a target. For example, researchers would want to find out if gene X (e.g. the gene for insulin) is
available in a target organism (e.g. a mouse, Mus musculus). Primers may be designed by looking at the
available sequences for gene X in the databases (e.g. all the genes for insulin in different organisms; humans,
pigs, cows, etc.). The different gene X sequences must be aligned/ compared to match areas of sequence
similarity (conserved sequences) and areas of sequence dissimilarity (non-conserved sequences). Primers
designed to have the same sequence as the conserved areas will be specific for binding gene X sequences
in all the target organisms. Primers designed to have the same sequence as the non-conserved areas will
only be specific for the organisms which match its sequence.
Primers may be classified as forward or reverse primers. Forward primers are complementary and bind
to the reverse complementary (non-coding) sequence of the gene. Reverse primers are complementary and
bind to the coding sequence of the gene.
PCR may be used to detect the presence of a desired gene in an organism. Depending on the primer
design, the expected product may represent only a specific region of the gene or the entire gene itself. The
first case is useful for detection of the gene, or the detection of organisms with that specific gene within a
sample. The second case is useful for the amplification of the entire gene for eventual expression in other
organisms. The direct amplification/copying of a full gene is part of the process for “cloning” that gene.
Certain types of bacteria are capable of this process since they are able to take genes within their cell
membranes for eventual expression.
The genes are normally in the form of small, circular DNA structures called plasmids. The genes found in
the inserted plasmid DNA sequence will be expressed as proteins that provide specific traits to the
transformed bacteria.
GENERAL BIOLOGY 2
EXPLORE!
Directions: Read and analyze the given activity and questions. Write your answer on the space provided
for the activity or provide your own if needed.
Taken from the Webpage of University of Utah, 2019, a sample biography of a Filipino Scientist is
presented below for your reference.
GENERAL BIOLOGY 2
Baldomero (“Toto”) Olivera grew up in the Philippines; he received his B.S. degree in Chemistry
from the University of the Philippines, his Ph.D. working on the Biophysical Chemistry of DNA at Caltech,
followed by postdoctoral work in Biochemistry at Stanford. His early research contributions include the
discovery and biochemical characterization of E. coli DNA ligase, a key enzyme of DNA replication and
repair that is widely used in recombinant DNA technology. He is presently a Distinguished Professor of
Biology at the University of Utah.
Toto Olivera initiated the characterization of the venoms of the predatory cone snails. A large number of
peptide neurotoxins ("conopeptides") are present in these venoms, and their characterization led Olivera’s
research group to a broad involvement with molecular neuroscience. Conus venom components are used
to investigate the function of individual ion channels and receptors. The cone snail project has raised
wide-ranging biological questions, from mechanisms of protein folding and posttranslational modification,
to gene organization and mechanisms of speciation. Several peptides discovered in Olivera’s laboratory
reached human clinical trials and one (Prialt) has been approved for the treatment of intractable pain. He
is a member of the American Philosophical Society, the U.S. National Academy of Science, and the
Institute of Medicine. He was given the Outstanding Alumni Award of Caltech, the Redi Award from the
International Society for Toxinology and the Harvard Foundation Scientist of the Year 2007 Award. As an
HHMI professor, Dr. Olivera has implemented an outreach program to instill an interest in science in young
students by educating them about scientific principles they can observe in the organisms that they see
every day.
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RUBRICS
CATEGORY 1 2 3
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Rea, Maria Angelica D., and Dagamac, Nikki Heherson A. 2017. General Biology 2. Quezon City, Philippines:
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1. Which vehicles are often used for gene therapy to carry a healthy gene?
a. bacteria b. powder balls c. plastic capsules d. viruses
2. In which ways can genetic engineering can improve crops?
a. Make them pest or drought resistant c. Make them larger
b. Make them more nutritious d. All answers are correct
3. A clone is ____________.
a. recombinant DNA b. a transgenic organism c. plasmid d. genetically identical
4. Making changes in the DNA of an organism is called _____________.
a. selective breeding b. artificial selection c. genetic engineering d. genetic transformation
5. What term is used to express creating an identical copy of a gene or organism?
a. hybridization
b. inbreeding
c. cloning
d. gene splicing
6. What process is shown in the picture?
a. Gene therapy
b. DNA fingerprinting
c. Cloning
d. Gene splicing
7. Putting the gene for bioluminescence into a fish is an example of ____________.
a. Genetic Engineering
b. Selective Breeding
c. Artificial Selection
d. Gene Mutation
8. The advantages of genetically modified crops include(s) _______________.
a. insect resistance
b. drought/freeze resistance
c. higher yield
d. all of these are reasons for using GMOs
9. Why might people be against cloning?
a. It's creepy b. It can cause unknown defects c. It is detrimental to genetic diversity d. All of the above
10. In cloning, what is the purpose of the surrogate mother?
a. Donate her DNA b. Donate her egg cell c. Incubate and carry the baby until birth d. Nothing. She's useless.
11. Which of these would NOT be a case of GM (genetic modification)?
a. Cloning a mammoth
b. Golden rice
c. Square watermelons
d. Glowing tobacco plant
a. I, II, III, V, VI, IV b. I, III, II, IV, V, VI c. I, II, III, IV, V, VI d. I, II, III, IV, VI, V
24. In this technique, a “gene gun” is used to fire DNA-coated pellets on plant tissues. Cells that survive the
bombardment, and are able to take up the expression plasmid coated pellets and acquire the ability to express the
designed protein.
a. Electroporation
b. Biolistic
c. Plasmid Insertion by heat shock treatment
d. insertion
25. This technique follows a similar methodology as Heat Shock Treatment, but the expansion of the membrane pores
is done through an electric “shock”. This method is commonly used for insertion of genes into mammalian cells.
a. Electroporation
b. Biolistic
c. Plasmid Insertion by heat shock treatment
d. insertion
GENERAL BIOLOGY 2
26. The genes are normally in the form of small, circular DNA structures called __________.
a. virus b. cell wall c. plasmid d. nucleus
27. It is an in-vitro method that simulates DNA replication in vivo. It utilizes a thermostable (heat-resistant) DNA
polymerase that builds single stranded DNA strands unto unwound DNA templates.
a. PCR Amplification b. Retention c. Selection d. Hybridization
28. The following are example of gene modification EXCEPT;
a. insertion of human insulin gene
b. insertion of BT-toxin gene
c. delayed ripening with the use of enzyme
d. lycopene in a tomato
29. Based on the central dogma, if transcription and translation of genes lead to some traits, then the insertion of
certain genes in a given organism may provide it with new traits. This is the basis for the development of
___________________.
a. Naturally occurring organisms
b. Genetically disrupted organisms
c. Genetically modified organisms
d. Physically altered organisms
30. What is removed from the nucleus of an animal cell during Genetic Engineering?
a. Gene b. Plasmid c. Nucleus d. Ribosome