Professional Documents
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Abstract
A workshop was held on September 13 and 14, 1993, at the GSF, Neuherberg, Germany, to start a discussion of
experimental design and statistical analysis issues for three in vivo mutagenicity test systems, the micronucleus test in mouse
bone marrowrperipheral blood, the chromosomal aberration tests in mouse bone marrowrdifferentiating spermatogonia, and
the mouse dominant lethal test. The discussion has now come to conclusions which we would like to make generally known.
Rather than dwell upon specific statistical tests which could be used for data analysis, serious consideration was given to test
design. However, the test design, its power of detecting a given increase of adverse effects and the test statistics are
interrelated. Detailed analyses of historical negative control data led to important recommendations for each test system.
Concerning the statistical sensitivity parameters, a type I error of 0.05 Žone tailed., a type II error of 0.20 and a dose related
increase of twice the background Žnegative control. frequencies were generally adopted. It was recommended that sufficient
observations Žcells, implants. be planned for each analysis unit Žanimal. so that at least one adverse outcome Žmicronucleus,
aberrant cell, dead implant. would likely be observed. The treated animal was the smallest unit of analysis allowed. On the
basis of these general consideration the sample size was determined for each of the three assays. A minimum of 2000
immature erythrocytesranimal should be scored for micronuclei from each of at least 4 animals in each comparison group in
the micronucleus assays. A minimum of 200 cells should be scored for chromosomal aberrations from each of at least 5
animals in each comparison group in the aberration assays. In the dominant lethal test, a minimum of 400 implants Ž40–50
pregnant females. are required per dose group for each mating period. The analysis unit for the dominant lethal test would be
the treated male unless the background frequency of dead implants ŽDI. is so low that multiple males would need to be
)
Corresponding author. Tel.: q49-89-3187-2302; Fax: q49-89-3187-3099; E-mail: adler@gsf.de
integrated to meet the minimum observation of one adverse outcome ŽDI. per analysis unit. A three-step strategy of data
analysis was proposed for the cytogenetic assays. Use of negative historical controls was allowed in certain circumstances
for interpretation of results from micronucleus tests and chromosomal aberration tests. q 1998 Elsevier Science B.V. All
rights reserved.
Keywords: Experimental design; Statistical analysis; Micronucleus test in mouse bone marrowrperipheral blood; Chromosomal aberration
tests in mouse bone marrowrdifferentiating spermatogonia; Mouse dominant lethal test
Fig. 1. Strategy of statistical evaluation of test data for micronucleated PCE and aberrant bone-marrow cells. The strategy applies for data
which contain several doses and a negative control. Historical negative controls serve two purposes; first to accept or reject a set of data, and
second, to evaluate individual data points by pair-wise comparison.
one adverse event Žmicronucleus, aberrant cell, dead and K ŽTable 1.. The data of laboratory K could
implant. will be recorded for each analysis unit. It deviate from the theoretical distribution because of
should be generally required that a clear description the rather small number of groups. The reason, how-
of the design of the experiment including the power ever, for the small Poisson index for the data of
of the test, the statistical methods used to analyse the laboratory A is not clear. Although there were these
data and the level of significance actually achieved is two exceptions, it can be concluded that the frequen-
required in every data report. cies of spontaneous micronucleated immature ery-
throcytes in negative Žno treatment or vehicle. con-
trols follow a Poisson distribution Ža binomial distri-
3. Micronucleus test bution, as well. thus the differences among animals
are minimal.
The analysed variables are firstly, the proportion The results of the F-test on the micronucleus data
of immature erythrocytes with micronuclei ŽMN. and excluding the two groups with exceptional factors
secondly, for bone marrow toxicity, the proportion of are summarized in Table 2. Data for the F-test were
immature erythrocytes among total erythrocytes. not transformed because some data were only pro-
vided as percent micronucleated cells. A preliminary
3.1. Historical control data analyzed trial with selected data showed no difference be-
tween the results of F-tests with square-root trans-
The historical control data of the micronucleus formed and non-transformed data. When F-ratios are
test have been provided by 12 laboratories Ž7 from relatively small then these factors do not seriously
Japan, 2 from UK, 2 from USA, and 1 from Ger- affect the background level. However, there are sev-
many. and are comprised of 1299 experiments with a eral factors affecting the frequencies of micronucle-
total of 6883 mice ŽTable 1.. In most laboratories, ated immature erythrocytes, i.e., years when data
the Poisson index of dispersion was approximately were obtained Žpossibly by different investigators.,
1.0 as expected with two exceptional laboratories, A strains of mice, and vehiclersolvents.
22 I.-D. Adler et al.r Mutation Research 417 (1998) 19–30
Table 1
Characteristics of the historical negative control data provided from micronucleus assays
X
Laboratory Total no of Total no of No. of animals per group Frequencies of MNPCE Mean T
animals groupsa Mean Max Min Mean S.D. Max Min
A 555 119 47 8 2 0.187 0.071 0.500 0.067 0.585
B 357 62 5.8 7 2 0.127 0.076 0.317 0.000 1.083
C 483 84 5.8 6 3 0.214 0.076 0.440 0.083 0.945
D 122 20 6.1 15 2 0.216 0.054 0.233 0.050 0.980
E 470 84 5.6 6 4 0.122 0.049 0.240 0.025 1.090
F 1026 193 6.3 12 1 0.278 0.087 0.600 0.000 0.903
G 395 69 5.7 6 4 0.208 0.067 0.400 0.075 1.021
b
H 601 121 5.0 5 3 0.185 0.074 0.380 0.020
I 599 120 5.0 5 4 0.090 0.053 0.244 0.000 1.041
J 1182 234 5.1 7 4 0.073 0.039 0.218 0.010 0.918
K 222 34 6.5 9 5 0.133 0.033 0.200 0.071 0.743
L 871 159 5.5 10 3 0.175 0.067 0.350 0.030 1.093
Total 6883 1299
a
Males and females in an experiment were considered as different groups.
b X
T could not be calculated because data were provided in percent with a significant figure of 2.
X
T : ŽPoisson index of dispersion.rŽgroup size minus 1..
On that basis, historical negative controls should the criteria necessary for quality of the historical
be compiled separately for strains and vehicles within control data are met, these data may be combined
each laboratory and it should comprise at least 10 over vehicles and time. To assure the quality of the
separate experiments. It was agreed that as long as historical control data there must exist no systematic
Table 2
Summary of F-tests of the historical negative control data provided from micronucleus assays
Laboratory Year Strain Vehicle Route No. of Sample time Cell type Sex No. of cells
treatments analysed
per animal
A ? q " y q q y " 1000
B ? BDF1 q q y y B " 1000
C ? BDF1 y y y q B y 1000
D " CD-1 y y y 24 B M 1000
E ? q y y y q B M y
F ? q nt nt $ $ P q 1000
G " ddY q " y y B M 1000
H q Swiss " po " y q y D
I ? ICR q po q q B y 1000
J ? CD-1 " ? q y B q q
K ? 102 = C3H y ip 1 24 B y 2000
L q B6C3F1 " ip 3 " B M 2000
q: Significant; ": Ambiguous; y: Not significant; ?: No data available; D: Probably identical numbers of cells were evaluated; nt: No
treatment, therefore ‘Number of treatments’ and ‘Sample time’ do not apply Ž$..
When name of strain, treatment Žpo or ip., Number of treatments Ž1 or 3., sample time Ž24., cell type ŽB s bone marrow or P s peripheral
blood., sex ŽM s males., and number of cells analysed per animal Ž1000. appear in the table, these factors were used exclusively in the
respective laboratory.
I.-D. Adler et al.r Mutation Research 417 (1998) 19–30 23
differences between the various control groups, cur- of statistical evaluation are proposed w12,13x. The
rent and historical w10x. Factors in achieving the steps are illustrated in Fig. 1.
above include: Ž1. Acceptance of the test: A test is acceptable
1. The method of scoring the response must be only if the mean of the concurrent negative control is
unchanged during the relevant period. within the mean " 3SD of the historical control,
2. The experimental units must be comparable where SD relates to the interanimal variability. Non-
throughout the period. acceptance requires a new experiment Žtest..
3. The experimental protocol must have remained Ž2. Dose–response analysis: When accepted, the
fixed throughout the period covered by the histor- data are evaluated by an appropriate trend analysis
ical data and the current experiment. using the concurrent negative control data w22x. A
significant positive trend test signifies an effect of
3.2. Size of the experiment the treatment.
Ž3. Evaluation of individual group responses: Each
On the basis of the historical control data Žaround
treated group mean is then evaluated by pair-wise
1–2 MNr1000 immature erythrocytes. a per animal
comparison to the historical negative control. If none
sample size of 1000 immature erythrocytes is insuffi-
of the individual treated groups shows a significant
cient to detect at least one micronucleus per animal.
difference but significance was shown in the trend
To avoid too many zero counts a minimum of 2000
test the interpretation requires biological judgement.
immature erythrocytes per animal should be scored.
The same applies to data which show no trend but a
The minimum number of animals is 4 per group if
significant difference between an individual treat-
the historical control is 1.5 MNr1000 ŽTable 3 and
ment group and the historical negative control pro-
Appendix A.. The protocol described above is suffi-
vided the pair-wise evaluation was corrected for
cient to detect at least 80% of chemicals which
multiplicity of comparisons w14x. The test may then
induce a 2-fold increase in micronucleated immature
be considered equivocal.
erythrocytes over the historical control level at the
The importance of the historical control mean and
significance level of 0.05 ŽTable 3, Fig. 3.. If a
variance makes it necessary that both should be
laboratory does not follow this sample size recom-
reported. We agree with Margolin and Risko w5x that
mendation it should justify their own experimental
historical control can be easily misused without
design and report the power of detection and the
proper safeguard Žsee Section 3.1..
assayed increment over the negative control.
This strategy is an illustration of an approach
3.3. Statistical methods to be proposed rather than a recommendation and laboratories should
feel free to choose their own approaches as long as
An experiment typically comprises a negative they justify them adequately.
Žsolvent. control group, three dose groups and a The procedure described here is applicable only to
positive control group w11x. Three consecutive steps the data of the frequencies of micronucleated imma-
Table 3
Power Ž%. for the micronucleus assay based on the mean frequencies of micronucleated cells in the negative controls under the given
sample size to detect a doubling of the spontaneous frequency with a significance of 5%
Percent of MN cells Number of animals per group Ž2000 cells per animal.
in negative 2 3 4 5 6
historical controls
0.10 42.9 65.2 73.4 82.8 86.4
0.15 63.6 78.4 86.3 91.8 96.2
0.20 73.1 86.7 93.2 96.6 98.6
0.25 82.1 91.7 96.6 98.7 99.4
0.30 87.1 95.8 98.3 99.5 99.8
24 I.-D. Adler et al.r Mutation Research 417 (1998) 19–30
ture erythrocytes and not to the ratio of the immature full potential, i.e., the variables analysed should in-
erythrocytes to total erythrocytes. The latter can be clude both the
approximated by a Gaussian distribution and stan- ) percentage of damaged cells, and
dard methods of statistical analysis are acceptable ) the types of aberrations observed, i.e., gaps,
w4x. breaks and exchanges.
The more laborious and skill-demanding cytoge-
netic test is best used for validationrcharacterization
4. Chromosomal aberration tests purposes.
The following considerations pertain to the analy- 4.1. Historical control data analyzed
sis of structural chromosome aberrations in bone
marrow cells as well as in differentiating spermato- The historical control data of the chromosomal
gonia. To make the effort of scoring all types of aberration test have been provided by 2 laboratories
aberrations meaningful the test should be used to its from the USA and are comprised of 135 experiments
Fig. 2. Comparison of negative control data from the bone marrow chromosomal aberration tests in two laboratories over time
Žmeans" SEM..
I.-D. Adler et al.r Mutation Research 417 (1998) 19–30 25
Table 5
Power Ž%. for the chromosomal aberration assay based on the mean frequencies of aberrant cells in the negative controls under the given
sample size to detect a doubling of the spontaneous frequency with a significance of 5%
Percent of aberrant Number of cells per group
cells in negative 400 600 800 1000 1200 1400 1600 1800
historical controls
0.5 23.8 38.9 43.9 56.0 66.0 65.8 73.8 78.7
1.0 44.7 66.7 73.0 83.5 86.6 91.3 93.6 96.2
1.5 65.8 78.9 87.4 92.4 95.6 97.2 98.7 99.1
2.0 75.3 94.2 95.0 96.5 98.6 99.3 99.4 99.9
characterize mutagenic effects in germ cells. De- cal dominant lethal test with treated males. They are
pending on the purpose, continuous treatment of all applicable to experiments for identification of andror
developmental stages from meiosis to mature ga- for characterization of germ cell mutagens.
metes followed by a short mating period or single
acute treatment followed by sequential matings are
commonly used. The statistical treatment of domi- 5.1. Definition of Õariables
nant lethal data has been described by various au-
thors w2,15–20x. The present recommendations of the Many authors have defined the possible variables
statistical test design are directed towards the classi- to be included in the evaluation of dominant lethal
data w15,21–24x. The main parameters of dominant
lethality are )Postimplantation loss: the proportion
of dead implants ŽDI.. )Preimplantation loss: aver-
age number of total implants per pregnant female in
the control minus average number of total implants
per pregnant female in the treated group. If corpora
lutea are counted, then preimplantation loss is calcu-
lated as corpora lutea minus total implants.
Other variables to be evaluated are:
) pregnancy rate,
) live implants per pregnant female,
) dead implants per pregnant female,
) contribution of early death and late death to
total death.
The analysis of all variables should be male ori-
ented. Although the smallest unit for analysis may be
Fig. 4. The type I error and the power of the proposed three-step the individual male, an analysis unit may involve
procedure for the bone marrow chromosomal aberration test. For multiple males, that is, it may be necessary to com-
the simulation, dose levels were set as Ž d 0 , d1 , d 2 , d 3 . s Ž0, 1, 2, bine the results for two or more males to achieve a
4. and the assumed population proportions of micronucleated cells
of historical controls as p s 0.5% Ž`., p s1.0% Žv ., p s1.5%
sufficient number of implants per analysis unit to
ŽI., and p s 2.0% ŽB.. The dose–responses were assumed as analyse the DI. The results for each variable can be
Žp 0 , p 1 , p 2 , p 3 ,. s Žp , p , p , p . for the type I error and Ž1=p , analyzed using analysis of variance methods after
1.25=p , 1.5=p , 2.0=p . for the power. A total of 5000 quasi transformation to achieve reasonable normality and
experiments were performed in the present simulation study. To similar intra-group variances w15,25x. It is particu-
keep the family-wise type I error at 5%, the nominal significance
levels for step 2 ŽCochran–Armitage trend test. and step 3 Žcom-
larly useful to present the data not only in tabular
parison with a historical control. were set as 20% and 5% Ž15r3., form containing all these parameters but to illustrate
respectively. the data graphically w26,27x.
I.-D. Adler et al.r Mutation Research 417 (1998) 19–30 27
Table 8
Approximate number of implants and number of pregnant females
Table 6
in each analysis unit needed to yield at least one dead implant
Approximate number of implants Žpregnant females. needed in
ŽDI. in negative controls with a range of DI-frequencies
each group to detect actual increases in the proportion of dead
implants ŽDI. when a s 0.05 and power is 80% DI-frequencies in negative controls
DI frequencies DI-frequencies in exposure groups Ž%. 3% 5% 7% 10% 12% 15%
in control 10% 15% 20% 25% Implants 30 20 15 10 8 7
groups Females 3 2 2 1 1 1
5% 333 Ž33. 105 Ž11. 55 Ž6. 35 Ž4. Males Ž1:3. a 1 1 1 1 1 1
10% na 535 Ž54. 155 Ž16. 76 Ž8. Males Ž1:2. a 2 1 1 1 1 1
15% na na 710 Ž71. 195 Ž20. Males Ž1:1. a 3 2 2 1 1 1
a
na s not applicable. Mating ratio.
28 I.-D. Adler et al.r Mutation Research 417 (1998) 19–30
when the value of the negative control in the simula- replaced by such a procedure for a downturn in the
tion was out of the 3)SD range, new series of dose–response data.
random numbers were generated. In the second step,
the Cochran–Armitage trend test using logŽdose.
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