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J Biotechadv 2017 10 003
J Biotechadv 2017 10 003
Biotechnology Advances
journal homepage: www.elsevier.com/locate/biotechadv
A R T I C L E I N F O A B S T R A C T
Keywords: Industrial enzymatic reactions requiring 1,4-NAD(P)H2 to perform redox transformations often require con-
Cofactors voluted coupled enzyme regeneration systems to regenerate 1,4-NAD(P)H2 from NAD(P) and recycle the co-
NADH factor for as many turnovers as possible. Renewed interest in recycling the cofactor via electrochemical means is
NADPH motivated by the low cost of performing electrochemical reactions, easy monitoring of the reaction progress, and
Biocatalysis
straightforward product recovery. However, electrochemical cofactor regeneration methods invariably produce
Electrochemical bioreactors
adventitious reduced cofactor side products which result in unproductive loss of input NAD(P). We review
Cofactor regeneration
Industrial biotechnology various literature strategies for mitigating adventitious product formation by electrochemical cofactor re-
Renalase generation systems, and offer insight as to how a successful electrochemical bioreactor system could be con-
structed to engineer efficient 1,4-NAD(P)H2-dependent enzyme reactions of interest to the industrial biocatalysis
community.
1. Introduction H2. The C-2 and C-6 isomers of the reduced form will be termed 1,2-
NAD(P)H2 and 1,6-NAD(P)H2, respectively, and the more general term
Nicotinamide adenine dinucleotide, commonly written as NAD+/ NAD(P)H2 will be used when specifying a particular isomer of the re-
NADH, and its phosphorylated variants nicotinamide adenine dinu- duced cofactor is not necessary.
cleotide phosphate, NADP+/NADPH, are biochemical redox cofactors Nearly 20% of known oxidoreductases require cofactors to supply
responsible for the transfer of electrons and protons in biological redox stoichiometric quantities of reducing equivalents. For nearly 700
reactions. Formally, this allows the transfer of a molecule of hydrogen known classes of redox enzymes (Ullah et al., 2015), 1,4-NAD(P)H2 is
between metabolic intermediates. The oxidized form of the cofactor the required cofactor. Since the total intracellular pool of both the
accepts electrons, balanced by protons, and in doing so can assume a oxidized and reduced forms of the cofactor is fairly low, the cofactor
number of isomeric structures as well as a dimer. These are shown in undergoes reduction and oxidation turnovers on the order of 103 to 105
Fig. 1. in typical reactions (Angelastro et al., 2017; Ströhle et al., 2016). The
The naming convention for the species in Fig. 1, however, is not current technology for regeneration of 1,4-NAD(P)H2, exemplified in
consistent in the literature, and the common NAD(P)+terminology Fig. 2, includes 1) sacrificial substrates, e.g., a non-valuable alcohol is
causes confusion when considering electrochemical reactions. As ex- present in the reaction mixture and is simultaneously oxidized to an
plained further in Section 2.1, the oxidized form will be termed NAD aldehyde (or acid). This was used by Whitesides and Wong (1982),
(P), and the biologically active reduced form will be termed 1,4-NAD(P) Wong and Whitesides (1983) to utilize all of the reducing power
Abbreviations: NAD, oxidized nicotinamide adenine dinucleotide; NADP, oxidized nicotinamide adenine dinucleotide phosphate; NADH2, reduced nicotinamide adenine dinucleotide
(any isomer); NADPH2, reduced nicotinamide adenine dinucleotide phosphate (any isomer); [NAD]2, nicotinamide adenine dinucleotide dimer; [NADP]2, nicotinamide adenine dinu-
cleotide phosphate dimer; DPN, diphosphopyridine nucleotide; DPNH, reduced diphosphopyridine nucleotide; TPN, triphosphopyridine nucleotide; TPNH, reduced triphosphopyridine
nucleotide; 1,n-NADH2, reduced 1,n-nicotinamide adenine dinucleotide; FAD, flavin adenine dinucleotide; HPLC, high performance liquid chromatography; MSE, saturated mercury
sulfate electrode; mt, metric tonne; SCE, saturated calomel electrode; Poly-His, polyhistidine; HRP, horseradish peroxidase
⁎
Corresponding author at: Department of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, 110 8th Street, Troy, NY 12180, United States.
E-mail address: koffam@rpi.edu (M.A.G. Koffas).
http://dx.doi.org/10.1016/j.biotechadv.2017.10.003
Received 23 August 2017; Received in revised form 2 October 2017; Accepted 6 October 2017
0734-9750/ © 2017 Elsevier Inc. All rights reserved.
Please cite this article as: Morrison, C.S., Biotechnology Advances (2017), http://dx.doi.org/10.1016/j.biotechadv.2017.10.003
C.S. Morrison et al. Biotechnology Advances xxx (xxxx) xxx–xxx
HO OH HO OH
O NH2
H
H2N N -
HO O O O Na+ H
O O
1,4-NADH2
N N P P N
O O O (sodium salt)
N
HO OH HO OH
O NH2
H2 N N H
HO O O O-
O P O + NADP (disodium salt)
N N P N
O O O pKa1 = 3.9; pKa2 = 6.1
N
O OH HO OH
O P O- Na+
O- Na+
O
O NH2 O NH2
NH2
H 3
3 H
H 2
2 4 4 R N 4 4' N R
H
N N 6 5
5
R 1 R 1
6 H2N
H H
O
H2 N N
HO O O O- Na+
N O P P O
R= N O O O
N
HO OH HO OH
available by employing three enzymes and oxidizing methanol all the Historically, the regeneration of 1,4-NAD(P)H2 by electrochemical
way to CO2; 2) whole cell methods, using resting cells or active fer- means has been well reported, but has never attained wide-spread
mentations, in which a nutrient such as glucose is metabolized to practical application due to the barrier caused by the formation of
provide reducing equivalents (Zaks and Dodds, 1997); and 3) combined biologically inactive isomers of NAD(P)H2 and dimers of NAD(P). The
chemoenzymatic methods (Eikeren, 1989). While all of these methods recognition of these well-known chemistries has held back the appli-
can be used, they require handling whole cells, multiple enzymes, and/ cation of electrochemical 1,4-NAD(P)H2 regeneration to industrial
or other molecules, such as the sacrificial substrate. Direct regeneration processes. As discussed in Section 4.2, strategies for dimer mitigation
of the 1,4-NAD(P)H2 would be simpler and less expensive if electrons have been recognized for decades, but no similar approaches for isomer
and protons could be provided directly to the oxidized form of NAD(P). mitigation were known. However, naturally occurring enzymes (re-
Electrochemical methods, under specific reaction conditions, are able to nalases) were recently discovered, as discussed in Section 4.2.1, in both
achieve exactly that. eukaryotic and prokaryotic cells whose primary function is the recovery
Formally, the reduced form of the cofactor, NAD(P)H2, carries one of the biologically inactive forms of 1,2- and 1,6-NAD(P)H2 by re-oxi-
molecule of H2, which is provided to the reaction being catalyzed by the dizing them back to NAD(P). This recent discovery of nature's system
enzyme requiring reducing power. Reduced cofactor is thus the che- for conserving the biologically active NAD(P) molecule within the cell
mical equivalent of hydrogen, and competition with other sources of can be incorporated into electrochemical systems for removing this
hydrogen must be considered when planning a chemical process that barrier.
could use NAD(P)H2. An electrochemical bioreactor must achieve a number of cofactor
2
C.S. Morrison et al. Biotechnology Advances xxx (xxxx) xxx–xxx
sacrificial
NAD(P) product
substrate
oxidized cofactor
WHOLE CELL
nutrient substrate
e.g. glucose
cell
CHEMO-ENZYMATIC
turnovers to maximize process efficiency and economic value. To when writing balanced electrochemical reactions showing the formal
maximize the number of cofactor turnovers, strategies for mitigating transfer of a hydrogen molecule, as two electrons and two protons, to
the formation of the adventitious but undesired reduced cofactor side the oxidized species NAD(P). These molecules are best regarded as a
products, 1,2- and 1,6-NAD(P)H2 as well as the dimer [NAD(P)]2, must neutral zwitterion, in the same way that amino acids are regarded, in
be considered. These mitigation strategies can take the form of re- order to account for a holistic perspective on the overall charge balance
covering NAD(P) or 1,4-NAD(P)H2 from the undesired reduction pro- within their native biological environments. To avoid further confusion,
ducts or preventing their formation in the first place. this review suggests to the chemical community the nomenclature of
This review surveys the literature of NAD(P)H2 reduction and oxi- Reaction 2 below, despite the lengthy historical use of the nomen-
dation over the last 70 years and documents the important electro- clature of Reactions 1a and b.
chemical products resulting from NAD(P) reduction along with the In its oxidized state, non-phosphorylated NAD is an electron ac-
observations that have confounded and confused the field for many ceptor with a formal positive charge at the quaternary nitrogen atom of
decades. This literature review, along with recent developments in the the nicotinamide ring and two ionizable hydroxyl groups on the di-
last 18 months, provides insights into the issues that have held back the phosphate linkage. The pKa of these hydroxyl groups are approximately
use of electrochemical regeneration of 1,4-NAD(P)H2. 2.4 and 6.6, respectively. The more acidic hydroxyl provides a formal
negative charge on the molecule to satisfy the positive charge on the
nitrogen atom in the nicotinamide ring as a zwitterion. Depending on
2. Redox enzymes and pyridine nucleotide cofactors
the exact pH, the second hydroxyl group will be deprotonated to
varying degrees giving NAD a net negative charge, contrary to the
2.1. Properties of NAD(P)H2
commonly used NAD + notation. This net negative charge is balanced
by a suitable cation in aqueous solution.
As of this review, thousands of articles in the scientific literature
A similar situation exists with NADP, albeit with two additional
refer to a charged species NAD(P)+ as part of a redox pair with neutral
ionizable hydroxyl groups on the extra phosphate moiety. Thus NADP
NAD(P)H2. Indicating a positive charge on the nicotinamide moiety of
should be properly represented as a di- or even tri-anionic species, not
NAD(P) without the context of the rest of the molecule leads one to
as NADP +, which suggests it is a mono-cation.
conclude that the entire molecule has a formal charge of + 1 due to the
The aforementioned discussion on net charge is important when
nitrogen at the 1-position of the nicotinamide ring. This is commonly
considering electrochemical redox reactions in solution. Critically, two
represented in the literature by either of the following representations:
electrons and two protons are required for the reduction of NAD(P) to
NAD(P)+ + H+ + 2e− → NAD(P)H (a) NAD(P)H2, and this is clear experimentally using mass spectrometry
NAD(P)+ + 2H+ + 2e− → NAD(P)H + H+ (b) Reaction (1) with NAD and NADH2 having a molecular weight difference of 2 amu.
Therefore, it is more accurate to report the overall redox reaction with
While commonly encountered, these descriptions lead to confusion
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C.S. Morrison et al. Biotechnology Advances xxx (xxxx) xxx–xxx
N Step 2a N
R R
e- 1,4-NADH2
O NH2 O NH2 Step 2
H H
e-
N+ Step 1 N Step 3
O
R R NH2
NAD NAD NAD
R N N R 4,4'-dimer; [NAD]2
H2N
H2N N
HO O O O- Na+ O
N O P P O
R= N O O O
N
HO OH HO OH
the following representation: paper as [NAD(P)]2, is also reported to form during the electrochemical
reduction of NAD(P). This reaction also locks some of the cofactor
NAD(P) + 2H+ + 2e− → NAD(P)H2 Reaction (2)
material into a biologically inactive form with each electrochemically-
In some reports, NAD(P)H2 is referred to in its enzymatically active driven reduction cycle. This problem, referred to as “the nonspecific
form as 1,4-NAD(P)H2 in order to specifically reflect that the hydrogen reduction problem,” was pointed out in the 1980s by Whitesides et al.
on the dihydropyridyl moiety is at the C-4 position. Other reported as a major reason for the inability of electrochemical 1,4-NAD(P)H2
names for the non-phosphorylated 1,4-NADH2 include β-NADH, DPNH, regeneration methods to be competitive with biological methods
and reduced coenzyme I. Other reported names for the phosphorylated (Chenault and Whitesides, 1987).
form, NADPH2, include β-NADPH, TPNH, and reduced coenzyme II. 1,2-NAD(P)H2 has a half-life of ~30 min (Beaupre et al., 2015).
1,4-NAD(P)H2 is significant in a variety of industrial processes. For However, this was probably not known to earlier researchers in the
example, the enzymatic production of butanol (Kang et al., 2007) and field who reported unusual situations where their experiments did not
ethanol (Shin et al., 2004); the hydroxylation of alkanes and aromatic give expected results. For example, Jaegfeldt (1981) observed dis-
compounds (Urlacher and Eiben, 2006); the epoxidation of alkenes crepancies in HPLC analyses of NADH2 isomer preparations. In another
(McClay et al., 2000); heteroatom oxygenations and Baeyer–Villiger study, 1,6-NAD(P)H2 was positively identified by Godtfredsen and Ot-
reactions (Zambianchi et al., 2002); as well as the hydrolysis of tri- tesen as an inhibitor of lactate dehydrogenase (Godtfredsen and
glycerides (Hollmann et al., 2006) are a few of the relevant industrial Ottesen, 1978), but the authors were probably unaware that 1,2-NAD
biocatalytic processes that utilize 1,4-NAD(P)H2 as a redox cofactor. (P)H2 also behaves as an inhibitor of 1,4-NAD(P)H2-dependent enzymes
1,4-NAD(P)H2 must be used in stoichiometric quantities for these as the isomer's instability likely prevented its detection or isolation
biocatalytic reactions, but the high cost and lability (Mädje et al., 2012) (Beaupre et al., 2015). Similarly, Biellman et al. reported difficulties in
of these cofactors presents an imposing economic obstacle for industrial isolating and studying certain inhibitors of lactate dehydrogenase
processes relying on 1,4-NAD(P)H2 without the ability to reduce NAD (Biellmann et al., 1979).
back to 1,4-NAD(P)H2. Furthermore, it is disadvantageous to add high The mechanism for the electrochemical formation of the 4,4′-dimer
concentrations of cofactor to an in vitro enzyme reaction since excess [NAD]2 is shown in Fig. 3. A one-electron reduction occurs at a re-
amounts can lead to enzyme inhibition (Williams, 1952). Therefore, ducible position of the pyridine ring to form an NAD% radical, which
there has been motivation to achieve continuous in situ regeneration of then undergoes either a second electron transfer to form an anion
1,4-NAD(P)H2 from a limited pool of NAD(P). (which is then quenched by a proton) or a radical dimerization to form
Several approaches to 1,4-NAD(P)H2 regeneration have been in- an [NAD]2 dimer. If the second electron transfer is slower than di-
vestigated, including electrochemical, photochemical, and chemical merization, then dimer will be the predominant product (Ali et al.,
reduction methods (Lee and Whitesides, 1985) in addition to whole cell 2012b). Migration of the radical leads to the 1,2-NADH2 or the 1,6-
and coupled enzyme/substrate methods (Zhao and van der Donk, NADH2 isomers.
2003). Due to their low cost and simplicity, electrochemical techniques Given the three reducible positions on the pyridine ring, as well as
have received increased attention, and therefore this review focuses on additional stereoisomers of the dimer due to the asymmetric carbons at
1,4-NAD(P)H2 regeneration in electrochemical systems. the point of dimerization, one might expect a combinatorial number of
possible dimers, e.g. 2,2′-, 2,4′-, 2,6′-, 4,4′-, 4,6′-, and 6,6′-dimers, plus
2.2. The issue of nonspecific NAD(P) reduction the stereoisomers for each dimer, thus totaling 21 possible dimers. The
dimers are typically named by the combination of monomeric species
As opposed to enzymatic regeneration methods, which are highly that constitute the dimer, e.g. n,m′-[NAD(P)]2.
selective for the catalytically active form 1,4-NAD(P)H2, non-biological Experimental evidence suggests that only seven of the 21 possible
regeneration strategies are driven by nonspecific electrochemical, dimers are sufficiently stable to persist in solution. These are the three
photochemical or chemical reduction (Lee and Whitesides, 1985). Such possible 4,4′-dimers and the four possible 4,6′-dimers. Indeed, three
nonspecific approaches result in a mixture of reduced nicotinamide ring stereoisomers of 4,4′-dimers comprise 90% of electrochemically pre-
isomers, including the desired 1,4-species and the non-biologically ac- pared dimer solutions, while the other 10% consists of three stereo-
tive 1,2- and 1,6- reduction isomers (Chenault and Whitesides, 1987). isomers of 4,6′-dimers. No 6,6′-dimers nor any dimers involving the C-2
The formation of the inactive isomers leads to inefficiency in co- position were found (Jaegfeldt, 1981). Generally similar results were
factor regeneration systems and ultimately limits the recycling turnover obtained by Carelli et al., who observed only 4,4′-dimers after
due to dead-end products. In addition, a dimer of NAD(P), noted in this
4
C.S. Morrison et al. Biotechnology Advances xxx (xxxx) xxx–xxx
externally driven current flow commercially feasible. Moreover, the low surface area of these elec-
trodes results in a slow NAD(P) conversion rate, and the poorly-defined
fluid flow and mass transport characteristics of laboratory-scale elec-
oxidized trochemical systems present scale-up challenges (Walsh and Reade,
cofactor
1994). In addition, high overpotentials or use of electron mediators are
Anode Cathode often required for the direct reduction of NAD(P) to 1,4-NAD(P)H2 (Lau
6 H2O reduced et al., 2005). Electrochemical bioreactor technology development for
4 e- 4 e- cofactor
research use or for industrial production should, therefore, focus on
systems capable of achieving a practical number of cofactor turnovers
O2
in a reasonable amount of time.
+
The turnover efficiency for cofactors regenerated by any strategy
4 H3O+ 4 H3O+ 4 H2O
must be high enough to render the adventitious formation of useless
reduced cofactor products, i.e. the loss of usable cofactor per each
Anode Chamber Cathode Chamber turnover, negligible. Regenerating the reduced form of cofactor in situ
allows for large-scale reactions to proceed economically. Though to be
proton-
permeable
truly economical, the regeneration method should be capable of re-
membrane cycling the cofactor 102–106 times, depending on the cost of the co-
factor and the value of the products made by the process. The turnover
Fig. 4. The overall electrochemistry and general arrangement of the electrochemical cell.
Shown here is the direct electrochemical reduction of the oxidized form of the cofactor to efficiency required to have at least 50% remaining cofactor activity
the reduced form of the cofactor. after 102 turnovers is 99.3% and for 106 turnovers the efficiency needed
is 99.99993%. It then follows that of the various regeneration strate-
gies, the only strategy historically capable of delivering such turnover
electrochemical reduction (Carelli et al., 1981), and Kovář et al. who
efficiencies are those mediated by coupled redox enzyme reactions
found that 4,4′-dimers constituted the majority of electrochemical
using sacrificial substrates (Chenault et al., 1988).
dimer preparations, with only small amounts of 4,6′-dimers present in
Coupled redox enzyme reactions, whether through the use of sa-
the mixtures (Kovář et al., 1985). Thus, dimers of the 4,4′ type appear
crificial substrates or resting whole cell methods, utilize the simulta-
to form the most stable structures out of the 21 possible dimers, as
neous reduction of NAD(P) in one direction and the oxidation of 1,4-
predicted by Burnett and Underwood (Burnett and Underwood, 1968).
NAD(P)H2 in the other direction. This can occur by using an enzyme
with a reversible reaction in both reaction directions but acting on
3. Electrochemical bioreactors different substrates, or by using two enzymes with different activities
for different substrates that, when combined, result in the cycling of
3.1. Function of electrochemical bioreactors NAD(P)/1,4-NAD(P)H2 (see Fig. 2). Indeed, the production of many
modern industrially-relevant biocatalysis products requiring the re-
Electrochemical bioreactors operate on the principle of either pro- generation of 1,4-NAD(P)H2 are only made possible by the use of
ducing or using electrical current. Examples of electrochemical bior- coupled enzyme systems. Examples of such products include the statin
eactors include bio-batteries, microbial fuel cells, microbial electro- drug Lipitor® (atorvastatin calcium) (see Fig. 5) (Schroer and Lütz,
synthesis cells, enzymatic electrolysis cells, and electrolyzers (Rabaey 2009; Schroer et al., 2007; Ma et al., 2010), the antilipemic agent
et al., 2010). Electrolyzers are used most frequently in cofactor re- ZETIA® (ezetimibe) (Homann and Previte, 1996), the HIV protease in-
generation and are thus the focus of electrochemical bioreactors de- hibitor REYATAZ® (atazanavir) (Patel, 2006), the anti-malarial drug
scribed in this review. precursor amorphadiene (Ma et al., 2011), and the pharmaceutical
As shown in Fig. 4, the electrolyzer consists of an anode chamber, building block L-tert-leucine (Leuchtenberger et al., 2005) among other
where four electrons are obtained from O2 reduction to water, and a drugs (Zaks and Dodds, 1997).
cathode chamber, where these electrons are donated to the oxidized Electrochemical cofactor regeneration falls broadly into two stra-
cofactor to generate the reduced cofactor. The electrode chambers are tegies: 1) direct reduction of NAD(P) in the cathode chamber, and 2)
typically separated by an ion-selective membrane to allow for the indirect reduction of NAD(P) using a mobile electron transport med-
transfer of protons in the form of hydronium ions to cross from the iator in the cathode chamber that is recycled between an enzyme re-
anode chamber to the cathode chamber while the electrons are trans- action chamber where NAD(P) reduction takes place with the oxidized
ferred from the anode to the cathode chamber over the wire connecting electron mediator returning to the cathode chamber. In general, elec-
the chambers. tron transport mediators can be scaled to maximize the availability of
Reduced cofactor can be regenerated electrochemically with as electron-donating species throughout the system. This could help to
much as 98% of 1,4-NAD(P)H2 regenerated from NAD(P) in solution. minimize electrolyzer size relative to reactor volume.
This highly efficient regeneration of 1,4-NAD(P)H2 was reportedly ob- An electrochemical bioreactor system capable of simultaneously
tained with an electrochemical bioreactor utilizing a glassy carbon performing an 1,4-NAD(P)H2-dependent reaction of interest while ef-
electrode as the cathode (Ali et al., 2012b; Ali et al., 2011). While this is ficiently regenerating 1,4-NAD(P)H2 in situ offers an advantage over
promising, most systems reported to date are too small to be currently-practiced technology by eliminating the requirements of
OH O
sacrificial (reduced)
NADP Atorvastatin
substrate Cl
glucose, C6H12O6 oxidized cofactor O
reduced product
5
C.S. Morrison et al. Biotechnology Advances xxx (xxxx) xxx–xxx
6
C.S. Morrison et al. Biotechnology Advances xxx (xxxx) xxx–xxx
7
C.S. Morrison et al. Biotechnology Advances xxx (xxxx) xxx–xxx
H2N N -
HO O O O
N O P P O
N O O O
R= N
HO OH HO OH
economic potential of any industrial process relying on the electro- acceptor in this reaction (Avigliano et al., 1983). 1,4-NADH2 is also
chemical regeneration of 1,4-NAD(P)H2. known to participate in photooxidation reactions, presumably through
similar mechanisms as those proposed by Noguchi et al. (Noguchi et al.,
4.2.2. Photochemical recovery of NAD(P) from [NAD(P)]2 1997).
Bresnahan and Elving report that solutions containing the dimer Czochralska et al. reported that [NADP]2 oxidizes to NADP and
[NAD]2 are characteristically yellow-green in color. They observed that NADPH2 when irradiated at 365 nm with concomitant production of
upon exposure to daylight, the dimer solutions lost their yellow-green H2O2. They found that NADPH2 is also subject to oxidation by light, and
color in a few minutes while the solution in their dark electrolytic that its photooxidation is strongly dependent on the presence of oxygen
chamber remained yellow-green. They posited that a photochemical whereas the rate of photooxidation of [NADP]2 is similar under aerobic
reaction was responsible for the loss of dimer. They report that they and anaerobic conditions. The fact that the rate of anaerobic [NADP]2
illuminated their dimer solutions with UV light at 254 nm or at wave- photooxidation is competitive with aerobic [NADP]2 photooxidation
lengths exceeding 320 nm and found that the illuminated dimer solu- challenges the aerobic mechanism proposed by Liberatore et al. for
tion produced NAD in stoichiometric amounts. They also suggested that [NAD]2 photooxidation. Based on their experimental work, Czochralska
the reaction would produce some isomer NADH2, but their results did et al. proposed the following reaction scheme for the anaerobic pho-
not corroborate this hypothesis (Bresnahan and Elving, 1981). toconversion of [NADP]2 at 365 nm as shown in Fig. 8a and b.
Avigliano et al. described the light-induced homolytic cleavage of While the authors state that it is unclear what intermediates would
[NAD]2 dimer to NAD% free radicals which are further oxidized by be responsible for NADP and H2O2 production, they maintain that it
oxygen to NAD. They reported significant concomitant oxygen con- must be due to some interaction with water (Czochralska et al., 1990).
sumption and H2O2 production when [NAD]2 was exposed to UV light Photochemical recovery of NAD(P) from [NAD(P)]2 could be simi-
above 300 nm. These observations led them to propose the following larly engineered into an electrochemical bioreactor system to achieve
overall reaction: the same advantages as an enzymatic or electrochemical recovery re-
action as mentioned in Sections 4.2.3 and 4.2.4.
[NAD]2 + O2 + 2H+ → 2NAD + H2 O2 Reaction (3)
and the reaction products were confirmed with enzymatic assays. The 4.2.3. Electrochemical recovery of NAD(P) from [NAD(P)]2
proposed mechanism is as shown in Fig. 7. Dimeric species can be electrochemically oxidized to NAD(P).
[NAD]2 is put into an excited state by photon absorption. The ex- Specifically, Carelli et al. reported that the dimers undergo oxidation at
cited dimer then breaks up into NAD% free radicals, which can either − 0.2 V vs. SCE on a hanging mercury drop electrode, 0.5 V vs. SCE on
interact with oxygen to form the oxidized cofactor NAD and H2O2, or a platinum electrode, and 0.6 V vs. SCE on a glassy carbon electrode
they can interact with themselves to reform the dimer. Indeed, anae- (Carelli et al., 1981). Jaegfeldt reported that the dimers can be elec-
robic pathways for [NAD]2 photooxidation involving the formation of trochemically oxidized to NAD(P) at − 0.1 V vs. SCE on a mercury
dihydopyridyl radicals via interaction with solvent have been proposed, electrode. The author also adds that following electrochemical oxida-
but it is not obvious what intermediate would behave as an electron tion, the product was tested for activity against alcohol dehydrogenase
and ethanol. With this assay, 100% of the resulting NAD was en-
h zymatically active (Jaegfeldt, 1981). Similar results for the oxidation of
[NAD]2 [NAD]2* [NAD]2 and [NADP]2 dimer were reported by Schmakel et al. (1975).
8
C.S. Morrison et al. Biotechnology Advances xxx (xxxx) xxx–xxx
b
h
[NADP]2 [NADP]2*
[NADP]2* 2 NADP
h
2 [NADP]2 2 [NADP]2*
used NADH2 isomers as its substrate. They demonstrated experimen- from [NAD(P)]2 could be engineered into an electrochemical bioreactor
tally that the mung bean enzyme actually catalyzed the oxidation of system to deal with the adventitious formation of dimer that would
[NAD]2 to NAD. Fricks et al. reported that the catalytic activity of the otherwise lock all input NAD(P) cofactor material into an unusable
enzyme was greatly accelerated upon addition of phenol as Kôno's form and severely limit the number of turnovers theoretically achiev-
unknown cofactor to the reaction mixture, and thus they reclassified the able by the 1,4-NAD(P)H2 regeneration system (Morrison et al., 2017).
enzyme as a phenol oxidase. Further, they found analogs of the enzyme
in various other plants such as corn, cotton, wheat, and other beans.
However, the activity of the enzyme from crude extracts was lost upon 4.2.5. Other recovery reactions
purification. They reported that commercially-available mushroom Molecular oxygen is known to oxidize [NAD(P)]2 to NAD(P) with
polyphenol oxidase also catalyzed the oxidation of [NAD]2 to NAD increasing oxidation rates at higher temperatures and lower pH. In an
(Fricks et al., 1973). anoxic environment, [NAD(P)]2 has been reportedly stable for several
Carelli et al. reported that cytoplasmic fractions from rat liver cells days (Kovář et al., 1985). This knowledge was gained in the context of
stimulated the uptake of oxygen by [NAD]2, and they verified the [NAD(P)]2 stability in various storage conditions, so it is unlikely that
production of NAD and H2O2 by an enzyme assay (Carelli et al., 1980). molecular oxygen will be a good choice of method for intentional NAD
Avigliano et al. showed that horseradish peroxidase (HRP) catalyzes (P) recovery from [NAD(P)]2 since the rate of [NAD(P)]2 oxidation is on
the oxidation of [NAD]2 to NAD in a pH-dependent manner, which the time scale of several days.
suggests a free radical mechanism similar to that known for the oxi- Doxorubicin, an anthracycline chemotherapeutic drug, has been
dation and peroxidation of NADH2 to NAD under the same conditions reported to oxidize [NAD]2 to NAD in anaerobic conditions when ex-
(Avigliano et al., 1985). Two reaction schemes were proposed – one posed to light. It is thought to occur through a series of one-electron
consuming molecular oxygen as the oxidant, the other using hydrogen transfers involving NAD% radicals. The same reaction is not observed
peroxide. In either case, the result is conversion of the [NAD]2 dimer to when 1,4-NADH2 is used in place of [NAD]2 (Carelli et al., 1988). Given
two molecules of NAD plus a water molecule. Interestingly, bacterial its clinical use and deleterious health effects in humans, it is unlikely
NADH2 peroxidase was unable to catalyze the oxidation of [NAD]2 to that doxorubicin will be a good choice for NAD(P) recovery from [NAD
NAD. The authors suggest it is because bacterial NADH2 peroxidase (P)]2 in larger-scale applications.
involves a two-electron transfer, but [NAD]2 oxidation is only catalyzed One-electron-accepting proteins, such as cytochrome c, azurin and
by one-electron transfers which further supports the hypothesis that the methemoglobin, have also reportedly been able to oxidize [NAD(P)]2 to
responsible mechanism involves free radicals. Kirkor and Scheeline also NAD(P) via a reaction involving NAD(P)% radicals. Avigliano et al. re-
reported on the enzymatic activity of HRP with [NAD]2 to form NAD. In port that while [NAD(P)]2 reacts generally favorably with one-electron-
addition, they reported that [NAD]2 participates in other biological acceptors, the dimers are unable to react with two-electron-acceptors.
redox reactions that allows for the reintroduction of HRP into the os- While these proteins may not be the best choices for engineering NAD
cillatory peroxidase-oxidase cycle (Kirkor and Scheeline, 2000). (P) recovery reactions in larger-scale applications, the dimers may in-
While these reports have hinted at the potential biological sig- stead be suitable species for discriminating between one-electron-ac-
nificance of [NAD(P)]2 in primary metabolism, none to date have ceptors and two-electron-acceptors in biological redox reactions
identified the potential implications of enzymatic [NAD(P)]2 recovery (Avigliano et al., 1986).
methods to industrial applications. Similar to the case for renalase, Czochralska et al. reported that [NADP]2 is also oxidized to NADP
immobilized enzymes that are able to catalyze the recovery of NAD(P) by iron chelates. Fe(CN)63 − oxidized [NADP]2 in the dark due simply
to the more positive redox potential of the Fe(CN)63 −/Fe(CN)64 −
9
C.S. Morrison et al. Biotechnology Advances xxx (xxxx) xxx–xxx
couple than that of the NAD(P)/NAD(P)% couple. They also found that notion that the redox states of cells in an actively fermenting culture
Fe(EDTA)2 + and Fe(CN)63 − were able to increase the rate of [NADP]2 can be fundamentally modified in order to drive up the production of a
oxidation to NADP upon irradiation at 365 nm (Czochralska et al., reduced fermentation product. This is thought to occur by reducing the
1990). It follows, then, that other redox pairs with redox potentials amount of carbonaceous feedstock that is sacrificially oxidized by the
more positive than that of the NAD(P)/NAD(P)% couple should be able cells to provide electrons for the reduction of NAD(P) to 1,4-NAD(P)H2,
to chemically oxidize [NAD(P)]2 to NAD(P). While this may be inter- thereby increasing the efficiency of carbon flux through metabolic
esting to some researchers hoping to recover NAD(P) from NAD(P) in pathways toward the target product. For example, the yield of 1,3-
small-scale applications, it is unlikely that this strategy could be em- propanediol by a mixed culture growing on glycerol was enhanced from
ployed for larger scale cofactor regeneration since the addition of extra 24.8% to 50.1% when an external current was applied to the culture.
chemicals to the system constitutes an added material cost in addition The authors found through a metabolic flux analysis that glycerol me-
to adding to the cost and complexity of downstream purifications. tabolism was redirected from propionate fermentation to 1,3-propane-
In summary, it is now well established in the literature that various diol production (Zhou et al., 2013). An example of a process catalyzed
enzymatic, chemical, and photochemical dimer oxidation mechanisms by a recombinant culture is the production of biofuels by Ralstonia
involve the formation of NAD(P)% radicals in aerobic and anaerobic eutropha. The authors reported the electrically-driven generation of
reactions. This may point to some fundamental biochemical property of 140 mg L− 1 of biofuels from CO2 alone (Li et al., 2012).
the dimer that is important to redox processes involving NAD(P)H2 However, the mechanisms by which electrically-driven cultures in-
(Avigliano et al., 1985; Avigliano et al., 1983; Czochralska et al., 1990; crease the carbon efficiencies and yields of reduced fermentation pro-
Carelli et al., 1988; Avigliano et al., 1986). ducts is not well understood. Harrington et al. looked at the metabolite
profiles of Escherichia coli, Klebsiella pneumoniae, and Zymomonas mobilis
following neutral red-mediated electrosynthesis to observe changes in
5. Conclusions
the organisms' metabolisms during electrically-driven fermentations.
They found through stoichiometric analysis that there were significant
5.1. Opportunities for in vitro and in vivo biocatalysis
metabolite changes observed during electrosynthesis for E. coli and K.
pneumoniae. No changes in Z. mobilis metabolism were observed. While
5.1.1. P450 monooxygenase reactions
the authors claim that NAD reduction alone could not account for all
There are many other potential applications beyond ketoreductases.
the metabolite changes observed, it is clear from their work that a
The P450 monooxygenases, which require a reducing equivalent to take
variety of electrically-driven effects on microbial metabolism culminate
up one oxygen atom from an oxygen molecule transforming it to water,
in an increase of carbon efficiency and yield of fermentation products
are very important reactions in living systems that are responsible for
(Harrington et al., 2015). There is a significant need for more research
inserting an oxygen atom between a carbon hydrogen bond (Urlacher
to be done to understand the mechanisms by which some organisms are
and Eiben, 2006; Vilker et al., 1999; Leonard and Koffas, 2007; Leonard
able to interact with their external environment to alter their own in-
et al., 2006; Leonard et al., 2005). There are no known chemical cat-
tracellular redox environment. A clearer fundamental understanding of
alysts that are capable of accomplishing this transformation that is es-
these phenomena could lead to the development of industrial microbial
sential to steroid hydroxylation, metabolite formation, and general
biological degradation of organic materials in the environment (see strains that are engineered to optimize target production without in-
creasing the amount of input carbonaceous material in electrically-
Fig. 9).
driven fermentations.
Although more work remains to be done to understand microbial
5.1.2. Microbial electrosynthesis electrosynthesis before extensive engineering can take place, the reader
The application of electrochemical bioreactors to the field of mi- is encouraged to read the review by White et al. for a current, com-
crobial whole-cell electrosynthesis is not comprehensively reviewed in prehensive understanding of how bacterial extracellular electron ex-
this paper. However, it deserves to be mentioned in order to make the change is thought to occur (White et al., 2016).
reader aware of the applications of electrochemical bioreactors in the
context of metabolic engineering, synthetic biology, and industrial
microbiology. The reader who is interested in microbial electrosynth- 5.1.3. In vitro biocatalysis
esis is encouraged to read some recent review articles that have given For the first time, strategies for dealing with the adventitious for-
an extensive treatment of the topic (Kato, 2015; Mohan et al., 2014; mation of useless and inhibitory reduced cofactor side products are
Choi and Sang, 2016; TerAvest and Ajo-Franklin, 2016; Tremblay and presented in the context of applied biochemistry and industrial bioca-
Zhang, 2015; Harnisch et al., 2015). talysis. Such reactions are henceforth designated as “recovery reac-
In general, the concept of microbial electrosynthesis is driven by the tions” and are crucial to the success of engineered electrochemical NAD
(P)H2 regeneration systems. Recovery reactions should be used in
R1 tandem with operational controls to minimize or eliminate the forma-
R1 H
H O tion of reduced cofactor side products while simultaneously maximizing
H H O2 H2O the selective formation of 1,4-NAD(P)H2.
R2
R2
R1
R1
P450 5.2. Current state-of-the-art for electrochemical reactor technology
O
enzyme
R2 To date, engineered electrochemical bioreactor systems have in-
R2
evitably suffered from the nonspecific reduction problem described in
R1 Section 2.2. It has not been possible to engineer an efficient or an
R1 O
O 1,4-NAD(P)H2 NAD(P) economic system for the concomitant in situ regeneration of 1,4-NAD
O
R2 (P)H2 with the formation of a product of interest via the catalytic ac-
R2
tivity of a redox enzyme. This review therefore serves as a path toward
Fig. 9. The utility of 1,4-NAD(P)H2-requiring P450 enzymes for biocatalysis is high- engineered solutions by which to achieve efficient and economic large-
lighted through various chemical transformations. The cost-efficient regeneration of 1,4- scale 1,4-NAD(P)H2-dependent biocatalytic processes using electro-
NADPH2 is essential to give access to these reactions on a meaningful scale.
chemical methods.
10
C.S. Morrison et al. Biotechnology Advances xxx (xxxx) xxx–xxx
Many practical challenges remain for the electrochemical re- This work was supported by BioChemInsights, Inc., Malvern, PA
generation of 1,4-NAD(P)H2, and this paper concludes by calculating through a Sponsored Research Agreement with Rensselaer Polytechnic
some benchmarks which should be kept in mind for practical systems. Institute; and the National Science Foundation Graduate Research
Generating hydrogen gas by conventional electrolysis using power Fellowship Program [grant number DGE-1247271].
from the electrical grid at US$60/KW gives a cost approximately US
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