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Plant Health Progress ¿ 2020 ¿ 21:166–172 https://doi.org/10.

1094/PHP-12-19-0095-DG

Diagnostic Guide

Diagnostic Guide for Cucurbit Downy Mildew


Andres Salcedo,1 Mary Hausbeck,2 Stacey Pigg,3 and Lina M. Quesada-Ocampo1,†
1
Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695-7613
2
Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824
3
Department of English, North Carolina State University, Raleigh, NC 27695-8105

Accepted for publication 18 April 2020.

Hosts: Under natural conditions cucurbit downy mildew affects most The pathogen is favored by cool and moist conditions and
of the economically important species of the Cucurbitaceae family progresses during the growing season as inoculum increases
including cucumber (Cucumis sativus L.), cantaloupe (Cucumis melo L.), (Granke and Hausbeck 2011; Granke et al. 2014). The latent period
squashes and pumpkins (Cucurbita spp.), watermelon (Citrullus from penetration to first symptoms ranges from 4 to 12 days, and its
lanatus [Thunberg] Matsumura and Nakai), sponge gourd (Luffa severity depends on environmental conditions, inoculum load, and
aegyptiaca Mill.) (syn. Luffa cylindrica [L.] M.J. Roem), bottle host susceptibility (Cohen 1977; Cohen and Eyal 1977; Rotem et al.
gourd (Lagenaria siceraria [Molina] Stand.), and wax gourd 1978). P. cubensis does not overwinter in geographic areas that
(Benincasa hispida [Thunb.] Cogn.) (Savory et al. 2011). Cucurbit experience a hard frost (Holmes et al. 2015). During the growing
downy mildew also affects several semicultivated and wild season in the United States (U.S.), pathogen spores may be dis-
Cucurbitaceae species such as buffalo gourd, balsam apple, and persed across long distances and transported North via air currents
balsam pear (Wallace et al. 2014, 2016). from warmer areas (Ojiambo et al. 2015). Year-round greenhouse
production of susceptible hosts can also provide a green bridge for
Disease: Cucurbit downy mildew. P. cubensis for overwintering (Savory et al. 2011).
Cucumbers are especially susceptible to P. cubensis (Call et al.
Pathogen: Pseudoperonospora cubensis (Berk. and M.A. Curtis) 2012). Initial symptoms include small (3 to 10 mm), water-soaked
Rostovzev, 1903. lesions on the upper (adaxial) leaf surface that become chlorotic and
are frequently restricted by leaf veins (Savory et al. 2011). A
Taxonomy diseased leaf may appear to have a mosaic-like pattern of angular
P. cubensis belongs to a distinct phylogenetic lineage of mi- lesions (Fig. 2A to C) (Hausbeck 2017). Signs of the pathogen
croscopic, filamentous, fungal-like organisms known as oomycetes include a distinctive dark brown, gray, or violet-black “down” on
or water molds (Thines 2014). Oomycetes include ecologically the underside (abaxial) leaf surface (Fig. 2E to G) resulting from the
significant pathogens in marine, freshwater, and terrestrial envi- pathogen’s sporangia (Hausbeck 2017). Symptoms and signs may
ronments (McCarthy and Fitzpatrick 2017). P. cubensis is a be readily observed during extended dew periods or following a rain
member of the highly diverse Peronosporaceae family, which in- event (Granke et al. 2014). The sporangia of P. cubensis may be
cludes more than 600 species (Thines and Choi 2016). The genus dispersed via air currents or water splashing (Ojiambo et al. 2015).
Pseudoperonospora comprises six plant-pathogenic species, of The chlorotic lesions become necrotic and coalesce, forming
which P. humuli, the causal agent of hop downy mildew (Rahman blighted areas that may cover the entire leaf, resulting in defoliation
et al. 2019), and P. cubensis are economically the most important in a short period of time (Lebeda and Cohen 2011). As the disease
(Cohen et al. 2015; Holmes et al. 2015; Ojiambo et al. 2015; progresses, the infected leaves turn dry and curl upward (Holmes
Rahman et al. 2017). The current taxonomic classification of et al. 2015) (Fig. 2C).
P. cubensis is shown in Table 1. Although cucumber displays distinctive downy mildew symptoms,
other cucurbit crops usually display variable symptoms, making
Symptoms and Signs accurate pathogen identification somewhat difficult (Crandall et al.
P. cubensis infects the leaves of cucurbitaceous hosts and can 2018; Withers et al. 2016). At intermediate stages of disease de-
occur at all developmental stages, causing significant reduction of velopment, squash leaves may display pale-green to yellow, round or
both yield and fruit quality (Lebeda and Cohen 2011). Defoliation irregular lesions sharply defined by veins on the upper surface that
results in fruits that are misshapen, undersized, and/or sun-scalded become necrotic (Cespedes-Sanchez et al. 2015). In cantaloupe,
(Savory et al. 2011) (Fig. 1). pumpkin, and watermelon, lesions frequently do not have the angular
shape that is characteristic of the disease on cucumber (Holmes et al.

2015). Instead, the lesions are irregular in shape, unrestricted by leaf
Corresponding author: L. M. Quesada-Ocampo; lmquesad@ncsu.edu
veins, and appear yellow to brown in color (Fig. 3). Pathogen
Funding: This work was supported by the United States Department of Agriculture sporulation on cantaloupe and watermelon tissue may be scarce
(USDA) Awards National Institute of Food and Agriculture Award 2016-68004- (Crandall et al. 2018) but sufficient for diagnosis.
024931 and NC State Hatch project number NC02628.

The author(s) declare no conflict of interest. Host Range


P. cubensis infects members of the Cucurbitaceae family, in-
© 2020 The American Phytopathological Society cluding over 50 species in 20 genera (Lebeda 1992; Lebeda and

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Widrlechner 2003; Palti and Cohen 1980; Wallace et al. 2014, hubbard), gourds, and pumpkin; and Citrullus including wa-
2016). However, P. cubensis isolates exhibit host adaptation, termelon (Citrullus lanatus [Thunberg] Matsumura and Nakai)
preferentially infecting some cucurbits but not others (Quesada- (Holmes et al. 2015). Limited capacity to infect hosts other than
Ocampo et al. 2012; Summers et al. 2015b). Historically, isolates cucurbits has been observed in P. cubensis, particularly on sus-
displaying differences in their ability to infect a panel of cucurbit ceptible hop (Humulus lupus) (Cannabaceae) under laboratory
hosts have been designated as pathotypes. To date, at least six conditions (Mitchell et al. 2011), and Impatiens irvingii (Balsa-
pathotypes of P. cubensis have been described in the U.S., Israel, minaceae) (Voglmayr et al. 2009).
and Japan (Cohen et al. 2003; Sarris et al. 2009), and roughly 67
pathotypes have been described in Europe (Lebeda et al. 2013). Geographic Distribution
Nine of the 12 cultivated cucurbit species may be infected by P. P. cubensis occurs throughout the world wherever cucurbits are
cubensis along with semicultivated and wild species (Lebeda and cultivated (Quesada-Ocampo et al. 2012). The pathogen can be
Cohen 2011; Mitchell et al. 2011; Palti and Cohen 1980; Wallace found in temperate (Cappelli et al. 2003; Pavelková et al. 2011),
et al. 2014, 2016) (Table 2). Several economically important cu- subtropical, and tropical areas (Salati et al. 2010), as well as in
curbit species including five major food crops are hosts to P. greenhouses (Naegele et al. 2016). However, crop damage is
cubensis. The following cucurbit genera are affected: Cucumis variable among geographic areas (Lebeda 1992; Lebeda and Cohen
including cucumber (C. sativus L.) and cantaloupe (C. melo L.); 2011; Lebeda and Widrlechner 2003; Savory et al. 2011; Spring
Cucurbita including summer squashes (zucchini, marrow, crook- et al. 2018). Because Cucumis is the most susceptible genus to
neck squash), winter squashes (delicata, acorn, spaghetti, butternut, P. cubensis, a majority of global downy mildew reports have in-
volved cucumber and cantaloupe (Palti and Cohen 1980). In
Europe, the pathogen was originally restricted to the Mediterranean
region, but it then spread to most European countries (Lebeda and
TABLE 1 Schwinn 1994). The disease occurs in Cucumis spp. in East Africa,
Pseudoperonospora cubensis taxonomic statusa western equatorial Africa, and South Africa. In Asia, downy mildew
Rank Name occurs in the major cucurbit producing countries of China, India,
Domain Eukaryota Japan, Indonesia, the Philippines, and the Middle East (Israel and
Superkingdom Chromalveolata Lebanon). The pathogen also affects production in Canada, the
Kingdom Chromista U.S., Central America, the Caribbean, Brazil, and Argentina (Palti
Infrakingdom Heterokonta or Stramenopiles
and Cohen 1980).
The geographical distribution of P. cubensis among members of
Phylum Pseudofungi (Oomycota)
the Cucurbita genus has included approximately 40 countries.
Class Peronosporea
There are reports of P. cubensis on members of the Citrullus genus
Order Peronosporales
from approximately 25 countries, primarily on watermelon (C.
Family Peronosporaceae
lanatus) (Cohen et al. 2003; Palti and Cohen 1980).
Genus Pseudoperonospora After years of managing P. cubensis in cucumber using resistant
Scientific name Pseudoperonospora cubensis cultivars, the pathogen re-emerged in 2004 in the eastern U.S.
(Berk. and M.A. Curtis) Rostovzev 1903 (Holmes et al. 2015). A shift in P. cubensis populations in the U.S.
a
Based on Beakes et al. (2012), Lebeda and Cohen (2011), Thines (2014), resulted in failure of the resistance provided by the dm-1 gene
and Global Biodiversity Information Facility (2020). (Barnes and Epps 1954; Pierce and Wehner 1990; Quesada-Ocampo

FIGURE 1
Cucurbit downy mildew caused by Pseudoperonospora cubensis on cucumbers results in defoliation and plant death (A) and in sun-scalded and misshapen fruit
of nonmarketable size (B).

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et al. 2012; Runge et al. 2011; Summers et al. 2015a). Since 2004, relied upon fungicides throughout the eastern U.S. (Blum et al.
frequent and intensive fungicide applications have been required, 2011; Goldenhar and Hausbeck 2019; Keinath et al. 2019). Similar
resulting in the development of pathogen resistance to commonly population shifts in P. cubensis resulting in disease outbreaks and

FIGURE 2
Symptoms and signs of cucurbit downy mildew caused by Pseudoperonospora cubensis on cucumber. Symptoms on the upper (adaxial) side of the leaf include
chlorotic (A) or necrotic (B), angular lesions that can coalesce (C), resulting in defoliation. Symptoms on the underside (abaxial) of the leaf include water-soaked
(D) and necrotic lesions (E) that may become covered in sporangia. The characteristic sign of P. cubensis is dark sporulation with downy appearance in the
underside of the leaf (D to F).

FIGURE 3
Symptoms and signs of cucumber downy mildew caused by Pseudoperonospora cubensis at early and intermediate stages of infection on cultivated cucurbits
including squash (Cucurbita pepo), pumpkin (Cucurbita maxima), cantaloupe (Cucumis melo), and watermelon (Citrullus lanatus). Lesions in noncucumber hosts
can be more variable in shape and not restricted by leaf veins. Signs of P. cubensis are also variable because the pathogen does not sporulate profusely in hosts
such as watermelon.

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failure of fungicides have been observed in Europe (Kitner et al. droplet (10 to 20 µl) of sporangia suspension is used for direct
2015; Urban and Lebeda 2007). inoculation on the underside of the detached leaf. Inoculum sus-
pension can be sprayed as microdroplets using a Preval Complete
Pathogen Isolation Spray Unit (Precision Valve Corporation, Yonkers, NY) over the
P. cubensis is an obligate biotrophic parasite, requiring a living underside leaf surface of a susceptible host inside a biosafety
host to survive and reproduce (Savory et al. 2011). Field isolates can cabinet (Fig. 4B). Inoculated leaves are incubated under 21/18°C
be collected by placing an entire infected leaf in a plastic bag day/night temperatures
_
with a 12/12-h light/day photoperiod
containing a moist paper towel and then storing the sample in a (100 µE m2 s 1); the paper towel in the humid chamber is moistened
cooler for transport to the laboratory. To obtain P. cubensis isolates, every other day with sterile distilled water under sterile conditions.
single lesions are identified using a dissecting microscope and Sporangia generally develop 7 to 8 days after inoculation (Withers
excised from infected leaves using a sterile scalpel (Wallace and et al. 2016). This propagation procedure can be performed with
Quesada-Ocampo 2017). Sporulation before lesion excision can be sporangial serial dilutions to eventually obtain a single sporangium
induced by placing infected leaves in a plastic bag or humid for pure culture; however, this strategy may be difficult because not
chamber over the upper side and incubating them at 18°C under all isolates infect all hosts equally and may not survive the serial
dark conditions for 24 h (Cohen and Eyal 1977). A humid chamber dilution and reinfection process. Alternatively, single-sporangium
may consist of sterile paper towel moistened with sterile distilled infection can be performed placing ;100 µl of sporangium sus-
water placed in a square bioassay dish (245 × 25 mm) (Fig. 4A). pension in a Petri dish and with the help of a dissecting microscope
Isolates are propagated by droplets or spray inoculation. Inoc- and a micropipette to aspire a single sporangium in minimum
ulum is prepared by excision of a discrete lesion from a leaf and volume (5 µl) to inoculate a host underside leaf surface (Gent et al.
agitation in distilled sterile water to release the sporangia. A small 2008). Inoculated leaves are incubated as described above.

Pathogen Identification
Cucurbit downy mildew is usually diagnosed by visual inspection
TABLE 2 of symptoms on the upper side of the leaf and sporulation on the
Some semicultivated cucurbit species infected by underside of the leaf (Savory et al. 2011). The pathogen is confirmed
Pseudoperonospora cubensisa as P. cubensis by examination of sporangiophores and sporangia
Genus Scientific name Common name presence, morphology, and pigmentation using a low-magnification
lens (10× lens) or a dissecting microscope (Crandall et al. 2018;
Cucurbita C. argyrosperma Huber Cushaw pumpkin
C. ficifolia Bouche Fig-leaf gourd
Rahman et al. 2017) (Fig. 5A to C). For compound microscope
observations, sporangiophore and sporangia may be removed from
Citrullus C. colocynthis (L.) Schrad Bitter apple
the leaf epidermis with precision tweezers, transferred to a drop of
Lagenaria L. sphaerica (Sond.) Naud. Wild bottle gourd
water on a microscope slide, and covered with a coverslip.
Luffa L. acutangula (L.) Roxb. Sponge gourd
The sporangia of P. cubensis are produced on a hyaline tree-like
Momordica M. charantia L. Bitter melon
structure called a sporangiophore (Fig. 5D). The sporangiophore
Trichosanthes Trichosanthes spp. Snake gourd is straight, nonseptate, and slightly swollen at its base. Sporan-
a giophore branching is monopodial, occasionally dichotomous or
Based on Lebeda and Widrlechner (2003), Palti and Cohen (1980), and
Wallace et al. 2014, 2016). pseudo-dichotomous, displaying a branching architecture from

FIGURE 4
Propagation of Pseudoperonospora cubensis: P. cubensis is propagated on detached leaves of a susceptible host (cucumber leaves in the photo) using a humid
chamber (A); a sporangia suspension is used to spray-inoculate the underside of leaves as microdroplets in a biosafety cabinet (B); and sporangia are harvested
in a 1.5-ml microcentrifuge tube (C). Microbial contamination is accumulated on the top white layer.

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three to five orders at acute angles. The ultimate branchlets are Alternatively, molecular diagnostic assays based on sensitive
straight to substraight with a subtruncate apex. The sporangium is nucleic acid methods have been developed to identify P. cubensis
lemon-shaped ovoid to ellipsoidal, olivaceous-brown, thin-walled, when traditional diagnostics are not sufficient for prompt pathogen
with a short protruding pedicel (Runge and Thines 2011). The identification (Withers et al. 2016). Because P. cubensis is host-
appearance and size of sporangia and the morphological characters specific, cucurbit downy mildew is assumed to be caused by this
of sporangiophores are influenced by environmental conditions pathogen (Savory et al. 2011). However, other downy mildew
such as temperature, light intensity (Cohen and Eyal 1977), and the pathogens have been reported infecting cucurbits (Wallace et al.
cucurbit host (Runge and Thines 2011). Among morphological 2016), and other Pseudoperonospora species may coexist in the
characters, the length of sporangiophores is the most variable same region as P. cubensis due to host availability (Ojiambo et al.
(Runge et al. 2012). 2015). Thus, when spore traps are used for sporangial sampling and
Diagnostics of P. cubensis may be difficult in some cucurbit hosts identification of the pathogen, microscopy may be insufficient to
due to similarity of leaf lesions to other diseases and low sporulation differentiate between P. cubensis and P. humuli sporangia (Rahman
(Crandall et al. 2018). Microscopy techniques have been used to et al. 2017). To overcome this limitation, P. cubensis can be dif-
visualize P. cubensis infection before noticeable symptoms de- ferentiated by molecular diagnostics using a specific DNA poly-
velop. Early pathogen identification may be achieved via obser- morphism on the cytochrome oxidase subunit II (cox2) gene
vation using a compound microscope with iodine staining (Koroch (Summers et al. 2015b) or a species-specific marker (Withers et al.
et al. 2013) and epifluorescence microscopy with aniline blue and 2016). In addition, species-specific molecular diagnostic assays
calcofluor staining (Cohen and Rubin 2012) (Table 3). have also been developed for P. humuli, a sister species of P.
cubensis (Summers et al. 2015a) (Table 4).

Pathogen Storage
P. cubensis isolates can be maintained long term (4 to 7 years) by
vacuum-drying the sporangia on an infected leaf, placing the leaf
with sporangia in a polypropylene screw-cap tube, and immediately
placing the tube in a liquid nitrogen storage tank (Gulya et al. 1993).
Isolates of P. cubensis may be maintained for a short period of time
via subculturing on infected detached cucurbit leaves, or by storing
infected leaves at –80°C. For propagation, sporangia suspended in
sterile water are adjusted to approximately 5 × 104 sporangia/ml using
a hemocytometer, sprayed onto cucumber leaves, and incubated in a
humid chamber. Sporangia develop within 7 to 8 days of incubation;
noncollapsed infected leaves with sporulating P. cubensis are rolled
and stored in 50-ml polystyrene tubes at –80°C (Withers et al. 2016).
Sporangia remain viable for approximately 6 months.
Sporangia for DNA isolation can be harvested by washing and
filtering as follows. After inspecting under the dissecting micro-
scope for sporangia, a P. cubensis-infected leaf is placed into a
FIGURE 5 funnel with the underside side facing up. A stream of sterile distilled
Pseudoperonospora cubensis sporangiophores and sporangia on cucumber water is directed to the leaf surface to dislodge the sporangia using a
leaves. Sporulation observed under a dissecting microscope at 20× (A and B) Preval Complete Spray Unit (Precision Valve Corporation). The
and 160× (C) magnification. Characteristic branching pattern of the hyaline sporangia are then passed through a 40-µm pore size “cell strainer”
sporangiophore bearing brown, oval or lemon-shaped sporangia (D) ob- placed on top of a 50-ml tube to remove leaf trichomes and plant
served under a compound microscope (400× magnification). Bar: 20 µm. debris. Sporangia are harvested by spinning down the 50-ml tube at

TABLE 3
Microscopy procedures for identification of Pseudoperonospora cubensis
Method Procedure
Leaf clarification Clarify a leaf section in boiling ethanol for 10 min, or 2 days with ethanol or
Visikol.
Method 1: Iodine solution and compound microscopy 1. Place specimen on a cover slip and apply two drops of Lugol’s iodine
(Koroch et al. 2013) solution for 1 min.
2. Add one drop of 70% sulfuric acid.
3. Cover with a coverslip and observe under a microscope. Cell walls of the
pathogen will have a brown-red coloration, contrasting with the plant tissue.

Method 2: Basic aniline blue-calcofluor and 1. Place specimen in 0.05 M basic aniline blue solution (pH 8.9) for 20 h at
epifluorescence microscopy (Cohen and Rubin 2012) 4°C.
2. Treat the sample with 0.01% Tris HCl pH 7.5 calcofluor or Uvitex 2B
solution for 15 min.
3. Examine with epifluorescence microscopy under UV light. Mycelium
strands inside the leaf will fluoresce green-yellow.

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TABLE 4
Available nucleic acid assays for Pseudoperonospora cubensis-specific diagnostics
Reference Target Primer/probe pair name Method Size (bp)
Summers et al. (2015a) cox2 RT33F: AACTCCCGTTATGGAAGGTATT High resolution melt curve 149
RT182R: CCATGTACAACAGTAGCTGGA and locked nucleic acid
CUBprobe: HEXACAAACGAATACT-BHQ1a
Withers et al. (2016) Crinkler CRN Forward: ATTTCACCTTAGAGTCACGGC 486
Reverse: CGGCCATCAACTCGTATCTC
Forward: GGAGACACGACAACAAATGCAG 854
Reverse: TGCGCGGCAAGAATTTAGG
Unknown Forward: ATGCAGCGGGTATCCTTCC 448
Reverse: CACGAAGAAGCAGGAAATGC
Unknown Forward: CGCGCAACCTTGAATACCTAC PCR 831
Reverse: CACCCGCTCGCAGTAATGAC
Unknown Forward: GACGCAACCCAGCATAACAAG 787
Reverse: TGCGCTCGAGTATCTTCTACC
Unknown Forward: TCATCACCATATCCGCTTCCTG 595
Reverse: TGCGTGAATGCTGTGCGAC
NPP1 Forward: CAGTTCTCGATTTCCCTCGTC 867
Reverse: CTCTACTCACAAGATCTGCCAC
a
Locked nucleotides on the probe are underlined. Conserved SNP at base 105 of the cox2 gene region is in bold.

10,000 × g for 5 min at 4°C. The supernatant is discarded, and the Pathogenicity tests using host differentials have been proposed
pellet is resuspended with 1 ml of sterile distilled water. The for P. cubensis to classify isolates into pathotypes (Thomas et al. 1987).
sporangial suspension is transferred to a 1.5-ml microcentrifuge The initial set of hosts proposed included Cucumis sativus, C. melo var.
tube and spun down at 15,000 × g for 1 min in a benchtop reticulatus, C. melo var. conomon, C. melo var. acidulus, Citrullus
microcentrifuge. The supernatant is removed from the tube via a lanatus, and Cucurbita pepo. Follow-up studies expanded the host
pipette without disturbing the black sporangial pellet. While dis- differentials to 15 cucurbits from eight genera and added Benincasa,
carding the supernatant, it is recommended to remove as much of Luffa, Lagenaria, Momordica, and Trichosanthes to the initial set
the white layer from the surface of the black spore pellet as possible (Cohen et al. 2015; Lebeda and Widrlechner 2003). Nonetheless,
to decrease bacterial and fungal contaminants (Fig. 4C). The classification of pathogens into pathotypes and races continues to be
sporangial pellet can be stored at –20°C to use for DNA isolation problematic due to the risk of false negatives that are common in an
but not for inoculum, because the sporangia will not remain viable. obligate pathogen and the lack of curation of host differentials to
ensure they are true to type in all studies (Crandall et al. 2018).
Pathogenicity Tests
Pathogenicity and host specificity of a P. cubensis isolate is Acknowledgments
frequently performed by quantifying the surface cover with spo- The authors thank all of the members of the Quesada lab for their
rangia production on adult plants, detached leaves, cotyledons, or valuable help.
leaf disks. For adult plants, P. cubensis sporangial suspension is
sprayed onto the underside of the first true leaves of the cucurbit
host and immediately placed into a moist chamber at 25°C under Literature Cited
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