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Drug Information Journal, Vol. 17, pp. 121-131. 1983 0092-8615/83 $3.00 + .

00
Printed in the USA. All rights reserved. 0 1983 Drug Information Association Inc.

QUANTUM MECHANICS IN DRUG


DESIGN: METHODS AND APPLICATIONS
B. BOYD,PHD
DONALD
Research Scientist
Lilly Research Laboratories
Indianapolis, Indiana

Quantum mechanics is especially useful in drug design when the mode of action of
the drug involves a chemical reaction. Some advantages as well as caveats about the
role of quantum mechanics in molecular modeling are reviewed.

Key Words: Computer-Assisted drug design; Molecular orbital calculations; Molecular


mechanics; Theoretical chemistry; 8-Lactam antibiotics

INTRODUCTION design and understanding of P-lactam anti-


biotics.
There are two main theoretical approach-
THIS PAPER is aimed at introducing the
es to studying the three-dimensional shape
laboratory medicinal chemist to some as-
and certain other physicochemical proper-
pects and terminology of theoretical com-
ties of biologically interesting molecules.
puter-assisted drug design. The paper is
One is molecular mechanics.'.2 The other
divided into two parts. The first part gives
method is quantum mechanics.
an overview of quantum mechanics, and,
Of the two approaches, the latter, quan-
in particular, a comparison of it to molecu-
tum mechanics, is older. The germinal mo-
lar mechanics. Some of the different quan-
lecular mechanics calculations were pub-
tum mechanical methods along with their
lished in the late 1 9 4 0 ~whereas
,~ quantum
strengths and weaknesses are briefly men-
mechanics has been applied to small mole-
tioned. No attempt will be made to go into
cules since the 1920s and to large, biologi-
the theory behind these methods because
cally interesting molecules since the early
the main point of interest to this audience
1950s. The research field of using quantum
is their utility. Likewise, no attempt will be
mechanics to study molecules of biologi-
made to review the literature on quantum
cal and pharmaceutical interest is mature
mechanics in drug design because it is al-
enough and large enough that the names
ready so large and rapidly growing. The
quantum biology and quantum phar-
second part briefly summarizes some of the
macology have been widely used since the
applications of quantum mechanics to the
late 1 9 6 0 ~ . ~ - "
One should not view quantum mechan-
This paper is based on an invited lecture at the Drug ics and molecular mechanics as competitive
Information Association Workshop on Computer in any way. They complement each other
Assisted Chemistry in Drug Design, February 20 to nicely. We therefore d o not advocate the
23, 1983, Philadelphia, Pennsylvania.
Reprint address: Dr Donald B. Boyd, Lilly Re-
sole use of quantum mechanics in molecular
search Laboratories, Eli Lilly and Company, Indian- modeling studies. In fact, there is a syner-
apolis, I N 46285. gistic interplay of the various approaches
121
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122 Donald B. Boyd

to computer-assisted chemistry, including lecular mechanics calculations have been


quantum mechanics, molecular mechanics, finely tuned over the last decade.
computer graphics, quantitative structure-
activity relationship (QSAR) techniques,
ADVANTAGES OF QUANTUM
and data base management.
MECHANICS
One might wonder, why use quantum
ADVANTAGES OF MOLECULAR
mechanics at all? There are some very good
MECHANICS
reasons. One is that quantum mechanics is
Some advantages of a molecular mechani- relatively general. We can take a molecule
cal approach to molecular modeling as con- with just about any functional group of in-
trasted with a quantum mechanical one are terest and compute properties like energy,
considered first. Because of its conceptual equilibrium geometry, et cetera. For a typ-
simplicity, molecular mechanics is easier ical quantum mechanical calculation using
for the average chemist to understand. One one of the modern programs, all the user
does not have to bother with things like needs for input is a reasonable set of geo-
kinetic energy integrals, resonance inte- metrical data. On the other hand, one of
grals, exchange integrals, and so forth. One the most bothersome restrictions of molec-
thinks in terms of Hook's law force con- ular mechanics is that, in addition to the
stants, natural bond lengths and bond an- geometrical data, every functional group
gles, van der Waals radii of atoms, et cet- needs its own unique set of parameters, and
era.'.3 no molecular mechanics program has good
In terms of speed, the three-dimension- values for all the parameters that one is
al structure of molecules can be determined likely to need.
with three orders of magnitude less compu- A second advantage of quantum me-
ter time by molecular mechanics than by chanics is that we can compute more prop-
quantum mechanics. Interactive computing erties. As mentioned, molecular mechanics
is becoming more popular. The user wants gives conformational energies and excellent
to see some results immediately. Molecu- bond lengths and bond angles in cases where
lar mechanics is ideally suited to this en- the force field is adequately parameterized.
vironment, and one would suspect that the In addition, some molecular mechanics
number of users of molecular mechanics programs like MM2 give a dipole moment
has been growing at a faster rate than the estimated from empirical bond moments
number of users of quantum mechanics. and also an empirically derived heat of for-
If all we need to know are the preferred mation. On the other hand, a quantum
conformations of some large molecule and mechanical program like MIND0/3 or
the relative energies of these conformers, MNDO gives all these properties, and many
then once again, molecular mechanics is the more.
method of choice. Quite commonly all the With quantum mechanics we can com-
chemist wants to have is a realistic picture pute electronic properties, such as charge
of a molecule in three dimensions. This can distributions. The charges on particular
help visualization of the steric and shape atoms can give us clues about reactive sites
properties of a drug. in a molecule or about how one molecule
Finally, there is the matter of accuracy. will interact electrostatically with another
A molecular mechanics program3 like molecule.
MM2 can often give structural information The quantum chemical calculations also
as good as one could obtain experimental- yield orbital energies and ionization poten-
ly. This accuracy is achievable because the tials. One example of use of the latter is the
empirical parameters which enter the mo- work of Domelsmith, et al.9 They reported

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Drug Design 123

that human psychotomimetic activity of where one wants t o obtain accurate infor-
amphetamine analogs is related to their ion- mation about some large drug molecules.
ization potential. Correlations were found Not infrequently the molecules are much
because the orbital energies reflect the elec- too big to determine every structural variable
tron-richness of the aromatic ring. by ab initio calculations, that is, quantum
Quantum mechanics is especially well mechanical calculations based only on first
suited to deal with transition states and principles and without empiricism.
electronically excited molecules. Sometimes One can start out by doing ab initio cal-
in drug design one is attempting to arrive culations on simple model structures that
at a transition state inhibitor. That is, one contain the functional groups of interest.
wants a molecule that is structurally and This will give the optimized internal geo-
electronically similar to a transition state metry, i.e., the equilibrium bond lengths,
formed by an enzyme’s natural substrate. bond angles, and torsional angles. Addi-
The enzyme will mistake the analog for its tionally, information is obtained about
substrate and be inhibited when the analog charges on atoms and about the potential
is able to bind at the active site more strong- energy surface, such as how much energy
ly than the substrate can. Quantum me- is required to deform or twist a bond.
chanics, especially at the more sophisticat- With this information in hand, one can
ed levels, can provide good representations next do molecular mechanics calculations
of the structural and electronic properties on the model structures and empirically ad-
of even short-lived species. just the force constant parameters until the
Finally, there is the matter of theoretical ab initio results are adequately reproduced.
rigor. Quantum mechanics is firmly based on The collection of parameters and empirical
the Schrodinger equation. As stated in Burk- energy functions, called the “force field,”
ert and Allinger’s Molecular mechanic^,^ can then be used to determine the three-
dimensional structure of conformations of
For calculating molecular properties, quantum the large molecules. The speed of these mo-
mechanics seems to be the obvious tool t o use. lecular mechanics calculations allows the
Calculations that d o not use the Schrodinger whole grid of conformational space to be
equation are acceptable only t o the extent that spanned if one desires. Finally, the atomic
they reproduce the results of high level quantum
coordinates for selected conformations of
mechanical calculations.
special interest can be fed into a quantum
mechanical program to obtain the informa-
Some theoretical purists like to emphasize
that molecular mechanics is nothing more tion that one was after to begin with.
than a fancy interpolative scheme. How-
ever, other theoreticians feel that there is QUANTUM MECHANICAL METHODS
a physical justification behind the seeming-
ly ad hoc prescription of the molecular There is a plethora of quantum mechanical
mechanics formalism. What really matters, programs available to the scientific com-
of course, is whether the results are useful. munity. Fortunately, most of these can be
obtained for just a nominal charge from the
In that light, both quantum mechanics and
Quantum Chemistry Program Exchange
molecular mechanics can provide informa-
tion helpful to drug design. (QCPE) at Indiana University.’
At the Lilly Research Laboratories,’O the
semiempirical molecular orbital (MO) pro-
SYNERGISM grams that we have found useful from time
The two approaches - quantum mechanics to time include EHT (Extended Huckel
and molecular mechanics -can even help theory), CND0/2 (complete neglect of dif-
each other. Consider the common situation ferential overlap), INDO (intermediate neg-

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124 Donald B. Boyd

lect of differeptial overlap); CND0/2D and Molecular properties can be computed


INDO/D (where the normal calculation is by ab initio methods, but a great deal of
followed by a deorthogonalization step and computer time will be needed, and the size
subsequent Mulliken population analysis,” of the model structures may have to be
CNDO/S (parameterized for electron spec- limited. An ab initio calculation can con-
troscopy), MIND0/3 (modified intermedi- sume ten-fold or more computer time than
ate neglect of differential overlap), and a semiempirical one. In order to save time,
MNDO (modified neglect of diatomic dif- some theoreticians who d o ab initio calcu-
ferential overlap). lations use such a “bare bones” basis set
On the ab initio side, HONDOS and the that the predictions may be even less reliable
GAUSSIAN programs are very useful. These than semiempirical ones. Thus, using an ab
can use basis sets like STO-3G, 4-31G, et initio method does not automatically insure
cetera, that are frequently seen mentioned reliability.
in the l i t e r a t ~ r e .The
~ . ~basis set is the col- At the other extreme, the semiempirical
lection of mathematical functions used to method Extended Huckel is very fast. It
describe the atomic orbitals. can handle huge molecules. It is not very
How d o you select one of these MO pro- reliable for some problems, but is often
grams? Essentially, you need to balance your fine for constructing orbital correlation
need for accuracy with how much you are diagrams, such as in determining whether
willing to pay. Some methods are compared a reaction is allowed under the Woodward-
in Figure 1 regarding their speed and relative Hoffmann rules.
error in predicting the properties listed. The PCILO (perturbative configuration in-
comparison is entirely qualitative and gen- teraction using localized orbitals) is a quan-
eralized over a number of molecule^.'^-^^ tum mechanical method, but not an MO

1 EH

CNDO12
INDO

(PCILO)
MINDO13
Calculated
Properties
Relative Total Energies
Orbital Energies
lonization Potentials
Charges
Dipole Moments
Geometries

PRDDO
MNDO
VRDDO
AB INlTlO
_ _ ~
7

Relative CPU Time Per Geometry


FIGURE 1. Comparison of some popular molecular orbital methods and PClLO in terms
of relative central processing unit computing time and relative error in predicted proper-
ties. Scales are arbitrary. Parentheses around PClLO take note of the fact that it Is not
an MO method and cannot be used to compute all the properties listed.

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Drug Design 125

method. PCILO is fast and can sometimes QUALITY ASSURANCE


give equilibrium bond lengths and bond
In order to avoid some of the systematic
angles about as accurately as MIND0/3.
problems, users of the quantum mechanical
PCILO is used mainly for conformational
methods are encouraged to keep the follow-
studies, but the publicly available programs
for this method are not especially user- ing principles’ in mind. These points may
friendly and sometimes predict anoma- seem self-evident, but they are important
lous hydrogen-bonded conformations to be in order to avoid misleading computational
stable. results.
PRDDO and VRDDO stand for “partial
retention” and “variable retention” of dia- 1. Test the theoretical method on some
tomic differential overlap, respectively, simple known cases related to the prob-
which means that some two-electron and lem at hand. Before expending a lot of
electron-nuclear attraction integrals are dis- time and effort, you should see whether
carded. They are “approximate ab initio” the method is giving reasonable results
methods. This may be a confusing combi- where experimental data are available
nation of terms. They are ab initio in the for comparison.
sense that there are no parameters empiri- 2. Use more than one theoretical procedure
cally fit to experiment. But they are ap- if applicable to your problem. This will
proximate because some integrals are left help you spot systematic errors produced
out or approximated. The methods are by some of the methods.
fairly accurate, but have not become too 3. Study a series of related molecules.
widely used because the authors have not Unavoidable systematic errors can some-
made them available through QCPE. times be taken into account if you use
CND0/2, INDO, MIND0/3, and the predicted results for comparison
MNDO are readily available from QCPE among themselves. In other words, rela-
and, depending on the problem at hand, tive values are more meaningful than ab-
represent appropriate compromises between solute values.
speed and accuracy. MINDO/3 and MNDO 4. Consider whether any new effects that
can be very useful for predicting properties are predicted agree with chemical intui-
such as internal geometries, gas-phase reac- tion. For instance, you may think you
tion energies, charges, vibrational frequen- are discovering a new chemical princi-
cies, dipole moments, ionization potentials, ple, when, in fact, you are seeing the ar-
and transition state structures. tifact of one theoretical method.
Unfortunately, most MO methods are 5 . Consult the literature. Ideally, all re-
subject to some systematic shortcomings. searchers should be fully familiar with
For instance, neither MIND0/3 nor MNDO what has already been published. This
is any good at treating hydrogen bond- would help them avoid repeating other
ing.7.13.15-17
Recently, however, a new ver- people’s unsuccessful endeavors. How-
sion of MINDO/3 has been published which ever, it is difficult enough for the spe-
addresses this problem.18 Another systema- cialist to keep up with computational
tic problem with MIND0/3 and MNDO is chemistry and even more difficult for
that barriers to internal rotation come out the laboratory scientist who only occa-
somewhat low .19.20 One problem with the sionally uses a theoretical method t o be
CND0/2 and INDO methods is that they aware of its shortcomings. The literature
overestimate attractive interactions between is sprinkled with examples where the
atoms, so that hydrogen bonds and non- same computational experiments are
bonded contacts are predicted to have equil- duplicated by independent groups. This
ibrium distances shorter than those observed situation stems in part from the fact that
e~perimentally.~’-~~ it is now often easier to d o a theoretical

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126 Donald B. Boyd

calculation yourself than to retrieve from nucleophile must penetrate will be intimate-
the literature a previous calculation on ly linked via the enamine pi-electron system
the same problem. to the substituent at the 3 position on the
cephem ring. We can set out to test this set
Those who are interested in the more of hypotheses using quantum mechanical
computational techniques.
pragmatic aspects of the methods just dis-
Specifically, we can use a model cephem
cussed are urged to attend one of the annual
structure with different substituents at the
workshops that are held by the Quantum
3 position; a hydroxide ion will suffice as a
Chemistry Program Exchange at Indiana
model nucleophile. The calculations will
University.’ Those workshops provide ex-
tell us about the energetics involved in the
cellent “hands-on” experience with the pop-
approach of the two reactants in this model
ular methods.
rea~tion.~ The
’ energy change can be com-
puted by the C N D 0 / 2 molecular orbital
APPLICATIONS method. C N D 0 / 2 is well suited for this
problem because it reflects quite nicely the
Having discussed some general aspects electronic effects of substituents that are
about the quantum chemical methods, at- transmitted throughout the molecule. Also,
tention will next focus on one specific area C N D 0 / 2 is relatively fast and can handle
of application. This application is note- large model structures.
worthy because of its success in illuminat- The change in energy brought about by
ing the biological activity of a significant moving the nucleophile from infinity to
class of drugs, the cephalosporin antibiotics. the optimized location near the P-lactam
The application is also of interest because ring is called the Transition State Energy
theoretical techniques provided insight into (TSE).32The more negative the TSE, the
the transition state structure of a reaction easier it is for the nucleophile to react
mechanism that is clearly pertinent to drug with the P-lactam. The TSEs range from
design.24 about - 128 to - 142 kcal/mole. The mag-
Some well known examples of cephalo- nitude does not matter. What is important
sporins are shown in Figure 2. Note that are the relative values for different substitu-
the structures differ by the substituents at ents. As the 3-substituent makes the 0-
the 3 and 7 positions on the cephem nucleus. lactam more reactive, the TSE becomes
Compared to drugs in other therapeutic more negative.
areas, much is known about the biological As seen in Figure 3, the TSEs correlate
and biochemical mode of action of ceph- with in vitro antibacterial activity against
alosporins and other 0-lactam antibi- some less resistant gram-negative patho-
o t i c ~ . ~The
. ~ availability
~-~~ of this infor- gens. The parabolic.natut-e of the curve
mation is invaluable to the application of arises because when the quantum mechan-
theoretical molecular modeling methods. ically predicted reactivity is low, then the
The P-lactam antibiotics act as acylat- compound does not acylate the bacterial
ing agents. We therefore need to examine enzymes well and the antibacterial activity
the hypothesis that the biological activity of is low. On the other hand, when the calcu-
a cephalosporin is related to the reactivity lated reactivity is too high, then the com-
of the P-lactam ring. The reactivity, in turn, pound has stability problems and decom-
may be related to how easy it is for a nucle- poses before having a chance to exert its
ophile to appr0ac.h the vicinity of the P- activity. Not many compounds have been
lactam carbonyl carbon. Furthermore, one made at the high TSE end of the scale be-
may suppose that the electron cloud above cause the compounds are difficult to obtain
and below this carbon through which the owing to their lack of stability. The opti-

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Drug Design 127

Y H H
R c
- -N Tf>
0 4’
o 5 R3
COOH
Name Ri R3
0
CEPHALOTHIN -CH2- 0- C- CH3
(1964)

CEPHALORIDINE -CH2- N(0)


(1968)
0
CEPHALOGLYCIN -CH,-O-C-CH,
(19701

CEPHALEXIN -CH3
(1971)

N= N, N-N
CEFAZOLIN NbN-CH, -CH2-S Xs& C H 3
(1973)
N-N
CEFAMANDOLE -CH,-S-(
N’
“N
(1978) OH
CH3

CEFACLOR -CI
(1979)

FIGURE 2. Structures of some cephalosporin antibiotics and the year they were intro-
duced into the United States market by Eli Lilly and Company.

mum biological activity is thus achieved in biological data for a rather complex pro-
the intermediate range on the TSE scale. cess, namely, the inhibition of bacterial cell
Regression analysis can be used t o ana- growth.
lyze statistically the type of correlation seen
in Figure 3 . Irrespective of whether the
DISCUSSION AND CONCLUSION
biological activity is expressed in terms of
MICs or logarithms of the reciprocal of the In this molecular modeling study, one must
MIC, satisfactory regression equations are go beyond just looking at the three-dimen-
obtained.8.28These show that a quantum sional structure of the molecules and look
mechanically derived index is able t o ex- at the electronic properties which determine
plain more than half of the variance in the the chemical reactivity. Conversely, the

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I28 Donald B. Boyd

70 I I I I I I I I I I I I I
-

:
60 -
-

30

1
20

“E
0

128 130 132 134 136 138 140


CONHZI
142
-Transition State Energy, kcal/mole
FIGURE 3. Antibacterial activity versus TSE. Activity is given as an average of gradient
piate minimum inhibitory concentrations (MIC) in pglml of a series of 7-(thien-2-ylacetyi)
cephalosporins agalnst Shigella sonnei, Escherichla coll, Klebslella pneumoniae, Entero-
bacter aerogenes, and Salmonella heidelberg. The substituents at position 3 of the cephem
nucleus are shown.

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Drug Design 129

shape of a P-lactam antibiotic structure can more electron density to shift to C(3) and
be one of the important parameters when away from C(4). The chemical shift differ-
comparing how well different 0-lactam ence correlates linearly with TSE.36 The
nuclei fit into an active Based on a second experimental observable that corre-
study of a heterogeneous set of 0-lactam lates with TSEs is the rate of alkaline hy-
antibiotics in enzyme systems of limited rel- drolysis (near pH 10) of the 0-lactam ring
evance to the lethal target enzymes, it has of 7-(thien-2-ylacetyl) cephalosporins.
been reported that goodness of fit is more 8,35.37 As one would expect, those 3-sub-

important than chemical r e a ~ t i v i t yHow-


.~~ stituted cephalosporins that hydrolyze faster
ever, for a series of related structures where have higher TSEs. An example of a correla-
molecular shape is invariant in the sterically tion between hydrolysis rate of cephalo-
important regions, such as for the 3-substi- sporins and the electron density on the 0-
tuted cephalosporins, chemical reactivity lactam carbonyl oxygen is shown in Fig-
becomes the dominant parameter affecting ure 4.
antibacterial activity. Several pieces of experimental and the-
Quantum mechanical modeling for the oretical data thus fit together in a very log-
7-(thien-2-ylacetyl) cephalosporins offers ical manner. It is safe to conclude that the
some unique advantages. Pervasive con- quantum mechanical calculations are giving
cepts about the structure-activity relation- meaningful results. In contrast to QSAR
ships of 0-lactam antibiotics suggest that parameters often used in drug design, the
lipophilicity and vibrational spectroscopic quantum mechanically derived molecular
data should be useful predictors of antibac- parameters have the attribute that they can
terial activity. However, octanol/water par- be obtained regardless of whether the com-
tition coefficients have been measured at pound has been previously synthesized and
pH 3 and 7 for these compounds, and they regardless of whether the substituent is one
do not show any correlation with the MICS.~ that appears in one of the familiar tables
Also, 0-lactam carbonyl stretching frequen- of QSAR parameters.
cies from ir spectra of 7-(thien-2-ylacetyl)
cephalosporins do not correlate significant-
PROGNOSTICATION
ly with biological data.8
One other advantage of the quantum Drug design is becoming more sophisticat-
mechanically derived molecular properties ed. More is being learned about the bio-
can be pointed out. That is that from the chemical mode of action of drugs. X-ray
beginning, a specific step in the mode of ac- crystallography is producing the three-di-
tion is being modeled by the calculations. mensional structure of more potential tar-
Thus, when a correlation is found, we know gets of drug action. In this environment,
how to interpret it. On the other hand, quantum mechanics will become increas-
arbitrary assemblages of molecular features ingly important as a tool for modeling the
or physicochemical properties often give drug-receptor interactions and other chemi-
nice correlations with a particular biological cal events, such as metabolic transforma-
activity, but it is sometimes difficult to tions, that occur when a drug elicits a bio-
know what the correlation signifies. logical response. The word tool needs to be
Before concluding, two other experimen- emphasized. Quantum mechanics will not
tal observables that correlate with TSEs displace any of the other important compu-
and closely related quantum mechanical in- tational tools of drug design. The bottom
dices, such as charge d i s t r i b ~ t i o nshould
,~~ line of drug design is still (a) synthesizing
be pointed out. One of these is the carbon- the compound and (b)testing the biological
13 chemical shift difference for carbons 3 activity. However, quantum mechanics will
and 4 of the cephem ring. Apparently 3-sub- hopefully help us reach this goal with more
stituents that give better activity also cause efficiency and greater understanding.

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130 Donald B. Boyd

-3.1

1
-3.6

i
-w
0
-4.1
1
-4.6

CH3
-5.1 I i 1 ~ i 1 1 ~ 1 1 1 ~ 1 1

-0.353 - 0.349 - 0.345 - 0.341


Q (091, e
FIGURE 4. Regression line for the relationship between rate of alkaline hydrolysis of
7-(thien-2-ylacetyl) cephaiosporins and CNDOlPD net atomic charge on the 0-lac-
tam carbonyl oxygen of model cephem structures. The substituents at position 3 of the
cephem nucleus are shown.

REFERENCES 6. Richards WG: Quantum Pharmacology. Woburn,


MA, Butterworths, 1977.
1. Boyd DB and Lipkowitz KB: Molecular mechan- 7. Boyd DB: Notes on CNDO, INDO, MINDO, and
ics: The method and its underlying philosophy. MNDO. Quantum Chemistry Program Exchange
J Chem Educ 1982; 59: 269-274. Workshop on Practical Aspects of Quantum Chern-
2. Lipkowitz KB and Boyd DB: Abstracts of Molecu- istry, Indiana University, Bloomington, IN, June
lar Mechanics Symposium, Indiana University- 21-26, 1981, and references cited therein.
Purdue University at Indianapolis, Indianapolis, 8. Boyd DB: Theoretical and physicochemical studies
IN. June 23-24, 1983. on P-lactam antibiotics, RB Morin and M Gor-
3. Burkert U and Allinger NL: Molecular Mechanics, man (eds): Chemistry and Bio1og.y of &Lacram
ACS Monograph 177. American Chemical Society, Antibiotics. New York, Academic Press, 1982 vol
Washington, DC,1982, and references cited there- I , chap 5 , pp 437-545, and references cited therein.
in. 9. Domelsmith LN, Eaton TA, Houk KN, et a1
4. Pullman B and Pullman A: Quantum Biochem- Photoelectron spectra of psychotropic drugs. 6.
istry. New York, Wiley-Interscience, 1963. Relationships between physical properties and
5. Bergmann ED and Pullman B: Molecular and pharmacological actions of amphetamine ana-
Quantum Pharmacology. Dordrecht, Holland; D. logues. J M e d C h e m 1981; 24: 1414-1421.
Reidel; 1974. 10. Boyd DB and Marsh MM: Computational chem-

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Drug Design 131

istry in the design of biologically active molecules 14. Nonbonded contacts between lone pairs on
at Lilly. Abstracts of 183rd American Chemical divalent sulfurs. J Phys Chem 1978; 82: 1407-1416.
Society National Meeting, Las Vegas, Nevada, 24. Quantum mechanics aids antibiotic design. Chem-
March 28-April 2, 1982, COMP 9. icul and Engineering News, June 16, 1980, p 27.
11. Boyd DB: Electron density and dipole moment 25. Tipper DJ and Strominger JL: Mechanism of action
analysis of valence-electron wave functions. J Am of penicillins: A proposal based on their structural
Chem SOC1972; 94: 64-70. Boyd DB: Electronic similarity to acyl-D-alanyl-D-alanine. Proc Nut1
structures of cephalosporins and penicillins. 111. Acud Sci USA 1%5; 54: 1133-1141.
EH and CND0/2D electron density maps of 7- 26. Spratt BG:The mechanism of action of penicillin.
amino-3-cephem. J Phys Chem 1974; 78: 2604- Sci Prog, Oxford, 65, 101-128 (1978).
261 1. 27. Waxman DJ, Yocum RR, and Strominger JL:
12. Halgren TA, Kleier DA, Hall JH Jr, et al: Speed Penicillins and cephalosporinsare active sitedirected
and accuracy in molecular orbital calculations: A acylating agents: Evidence in support of the sub-
comparison of CNDO/2, INDO, PRDDO, STO- strate analogue hypothesis. Phil Truns Roy Soc Ser
3G, and other methods, including AAMOM, B, London, 1980, 289: 257-271.
VRDDO, and ESE MO. J Am Chem Soc 1978; 28. Boyd DB: Theoretical studies of &lactam anti-
100: 6595-6608. biotics. Ann N Y Acud Sci 1981; 367: 531-542.
13. Dewar MJS and Ford GP: An addendum to 29. Moews PC, Knox JR, Waxman DJ, and Strom-
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