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Gall Age 2015
Gall Age 2015
Review Article
ABSTRACT
In recent years, biotechnology-derived production of flavors and fragrances has expanded rapidly.
The world’s most popular flavor, vanillin, is no exception. This review outlines the current state of
biotechnology-based vanillin synthesis with the use of ferulic acid, eugenol, and glucose as substrates
and bacteria, fungi, and yeasts as microbial production hosts. The de novo biosynthetic pathway of vanillin
in the vanilla orchid and the possible applied uses of this new knowledge in the biotechnology-derived and
pod-based vanillin industries are also highlighted.
Key words: metabolomics, natural products, phenylpropanoids and phenolics, molecular biology, plant biochem-
istry, synthetic biology
Gallage N.J. and Møller B.L. (2015). Vanillin–Bioconversion and Bioengineering of the Most Popular Plant Flavor
and Its De Novo Biosynthesis in the Vanilla Orchid. Mol. Plant. 8, 40–57.
VANILLIN AND VANILLA In 2010, the annual global sales of vanillin reached more than
15 000 000 kg, with less than 1% obtained by isolation from vanilla
Vanilla is one of the most widely used flavors in the world and
pods. The production of vanilla beans and the isolation of vanillin
is applied extensively in the food, beverage, perfumery, and
from vanilla pods is a laborious and costly process (Sinha et al.,
pharmaceutical industries. Natural vanilla is a complex mixture
2008). Production of 1 kg of vanillin requires approximately
of flavors extracted from the cured pods of two different species
500 kg of vanilla pods, corresponding to the pollination of
of vanilla orchids: Vanilla planifolia and Vanilla tahitensis (Rao and
approximately 40 000 vanilla orchid flowers. The market cost of
Ravishankar, 2000). The flavor and fragrance profile of the vanilla
natural vanillin derived from vanilla pods is therefore high and
extract contains more than 200 components. Vanillin (4-hydroxy-
3-methoxybenzaldehyde) (Figure 1) is the key component, with a
concentration of 1%–2% w/w in cured vanilla pods (Sinha et al., Published by the Molecular Plant Shanghai Editorial Office in association with
2008). The vanilla extract obtained from fermented vanilla pods Cell Press, an imprint of Elsevier Inc., on behalf of CSPB and IPPE, SIBS, CAS.
Figure 2. Different Routes to Natural Vanillin that Are Available or Soon to Be Available on the Market.
Microbial Production of Vanillin–Bioconversion for biotechnological production of vanillin. The increasing knowl-
and Bioengineering edge of enzymes that are involved in bioconversion of ferulic
The world of microorganisms is vast and many different microbial acid and other substrates to vanillin as well as the identification
organisms are being used for efficient production of natural food and characterization of genes that are encoding them offer new
components (Krings and Berger, 1998; Berger, 2007). Promising opportunities for more targeted bioengineering of microorgan-
strains have been selected based on their growth properties, isms for vanillin production.
production potential and tolerance to high concentrations of
both product and substrate. Microorganisms and fermentation In the following sections, the substrates most commonly used
ingredients, which have been given GRAS status, are preferred. for vanillin synthesis employing microorganisms (bacteria, fungi,
GRAS is an acronym for Generally Recognized As Safe under and yeast) are presented and discussed, with emphasis on the
the regulations of the US Food and Drug Administration major issues encountered and the solutions.
(Berger, 2007).
PRODUCTION OF VANILLIN FROM
Microorganisms that are able to metabolize a range of different
precursors into vanillin have been studied experimentally. Several
FERULIC ACID
major yet common issues have challenged the successful use of Ferulic acid is the best-explored substrate for production of
microorganisms for efficient bioconversion of putative substrates vanillin. Ferulic acid is abundant in nature and shares high
into vanillin. Bottlenecks include (1) cytotoxicity of the flavor structural similarity to vanillin. Free and bound ferulic acid
products obtained and of their precursors; (2) inefficient meta- (4-hydroxy-3-methoxycinnamic acid) is one of the most abundant
bolic flow; (3) formation of undesired by-products; (4) costly phenylpropanoids in plants. In plants, ferulic acid is bio-
downstream processing methods due to the physicochemical synthesized from the aromatic amino acids phenylalanine or
properties of the substrate and the product; and (5) further meta- tyrosine (Gross and Zenk, 1969; Dewick, 1989). The two
bolism of the desired product by the selected microorganisms. precursor amino acids are produced via the shikimic acid
Bioengineering tools have been employed to circumvent pathway (Dewick, 1989). The exact route for ferulic acid
these drawbacks. Bioengineering includes the use of tools such biosynthesis in plants has not been established. When
as mutagenesis-based selection and genetic engineering for produced from phenylalanine, the first intermediate is cinnamic
enzyme/strain optimization and for cost-efficient downstream acid and the reaction is catalyzed by phenylalanine ammonia
processing. Microorganisms that exhibit rapid growth rates and lyase (Fritz et al., 1976). Subsequently, cinnamic acid 4-
are amenable to molecular genetics provide suitable platforms hydroxylase (Russell and Conn, 1967; Gabriac et al., 1991;
42 Molecular Plant 8, 40–57, January 2015 ª The Author 2015.
Vanillin–Bioconversion and Bioengineering Molecular Plant
Schoch et al., 2001) catalyzes the hydroxylation of cinnamic acid glucose, xylose, or galactose to be integrated as part of the
at the 4-position, resulting in the formation of p-coumaric acid. p- pectin or hemicellulosic fraction of cell walls. These polymers
Coumaric acid 3-hydroxylase (C3H) (Schoch et al., 2001) can be up to 50 000 Da in molecular mass (Harris and
catalyzes the hydroxylation of p-coumaric acid at the 3 Trethewey, 2010).
position, resulting in caffeic acid formation. It is not clear
whether coenzyme A (CoA) derivatives are involved or whether In complete contrast to plants, no microorganisms in nature are
the C3-hydroxylation step proceeds, e.g. through quinate and known to be able to de novo synthesize ferulic acid. Neverthe-
shikimate esters (Schoch et al., 2001). Caffeic acid could in less, a vast number of microorganisms are able to utilize ferulic
principle be O-methylated by an O-methyltransferase (Lam acid as their sole carbon energy source. In addition, when micro-
et al., 2007) to afford ferulic acid. organisms are grown on eugenol as carbon source, ferulic acid is
formed as a transient intermediate.
Ferulic acid is an important biological and structural component
of the plant cell wall and can be found free, as homodimers, or
esterified with proteins or polysaccharides in the cell wall Bioconversion of Ferulic Acid to Vanillin
(Harris and Trethewey, 2010). Ferulic acid is the precursor of As illustrated in Figure 3A–3E, ferulic acid degradation pathways
coniferyl alcohol, which provides one of the monomers for lignin in microorganisms proceed with vanillin as an intermediate. It is
biosynthesis. In cereals, ferulic acid is esterified with arabinose, this inherent capability to produce vanillin that is exploited
Molecular Plant 8, 40–57, January 2015 ª The Author 2015. 43
Molecular Plant Vanillin–Bioconversion and Bioengineering
Figure 4. The CoA-Dependent Catabolism
of Ferulic Acid Via Vanillin in Amycolatopsis
sp. 39116.
classified as a natural product. The cost of naturally extracted recently been re-classified as Amycolatopsis sp. ATCC 39116
ferulic acid is relatively high, with a price around US$180/kg and in a later study has been shown to yield even more
(novorate.com). With such high costs for the starting material, vanillin, with product titers as high as 13.9 g/l and a molar
production of vanillin using this approach is very costly. Key yield of 75% (Muheim and Lerch, 1999; Fleige et al., 2013).
issues related to the use of ferulic acid from agricultural waste Another Amycolatopsis species, sp. HR167, has been shown
materials as a starting material for production of natural vanillin to produce vanillin at a concentration of 11.5 g/l, with a
are thus related to the development of optimized and less molar yield of 77.8% (Rabenhorst, 1996). Such strains are
expensive production costs. thereby suitable for vanillin production on an industrial scale,
as they can tolerate both high vanillin and ferulic acid
Toxicity concentrations and display a high conversion ratio of the
Aldehydes rarely accumulate in high concentrations in biological expensive ferulic acid substrate into vanillin. However, the
systems because of their high chemical reactivity, e.g. by form- filamentous growth of actinomycetes results in highly viscous
ing Schiff bases and thereby possibly inhibiting enzymatic activ- broths, unfavorable pellet formation, and a lot of fragmentation
ity, and show toxic effects in biological systems. A major issue and lysis of the mycelium, which complicate downstream
for efficient biotechnology-derived production of vanillin is thus processing.
product toxicity. High concentrations of ferulic acid are also
toxic to many microorganisms. Toxicity is manifested by inhibi- Genes involved in ferulic acid catabolism have been heterolo-
tion of the growth of the production strain or even cell lysis gously expressed in Escherichia coli mutants with high vanillin
(Priefert et al., 2001). Microorganisms that have been shown tolerance to bypass the problems related to product toxicity.
to produce vanillin at levels exceeding 1 g/l are summarized in This includes the Fcs and Ech genes responsible for ferulic
Table 1. acid conversion in Amycolatopsis sp. HR104 (Yoon et al.,
2005). The vanillin-resistant mutant strain was obtained following
Several studies have been targeted toward isolation of bacterial NTG (N-methyl-N-nitro-N-nitrosoguanidine) mutagenesis. When
species that tolerate high concentrations of ferulic acid and grown for 48 h in medium containing 2 g/l of ferulic acid as
vanillin. One study was carried out to isolate strains from nature much as 1 g/l of vanillin was obtained. To further circumvent
that were resistant to high levels of ferulic acid and vanillin the inhibitory effect of vanillin, XAD-2 resin was used to bind
and to investigate their ability to catabolize eugenol and the vanillin formed in the medium. This increased the vanillin yield
ferulic acid (Muheim and Lerch, 1999). Actinomycetes, such as to 5 g/l in 48 h when a five-fold increase in ferulic acid substrate
Amycolatopsis sp. and S. setonii, were able to accumulate was used during incubation.
high concentrations of vanillin while at the same time exhibiting
a high tolerance toward ferulic acid. Metabolic Flow and Side Product Formation
A balanced metabolic flow in the course of conversion of sub-
S. setonii was able to produce vanillin, with levels reaching strates into vanillin and prevention of formation of unwanted
6.4 g/l in shake flask experiments. The same strain has side products are other important factors in the production of
46 Molecular Plant 8, 40–57, January 2015 ª The Author 2015.
Vanillin–Bioconversion and Bioengineering Molecular Plant
vanillin. The flow of metabolites in the conversion of ferulic acid Another approach to reduce by-product formation is to use a
into vanillin varies among different bacterial strains. Pseudo- two-step fermentation process involving two different microbial
monas strains have been found to be excellent converters of organisms. In one such case, ferulic acid catabolism in A. niger
ferulic acid to vanillin (Muheim and Lerch, 1999). However, the and vanillin metabolism in Pycnoporus cinnabarinus were com-
vanillin formed is readily oxidized into vanillic acid and/or bined. In the first step, ferulic acid was catabolized to vanillic
reduced to vanillyl alcohol. In contrast, S. setonii metabolizes acid in high yield by the micromycete A. niger. In the second
ferulic acid to vanillin as an overflow product because of a step, the vanillic acid formed was reduced to vanillin by the
bottleneck in the oxidation of vanillin to vanillic acid catalyzed basidiomycete P. cinnabarinus. The vanillic acid and vanillin titers
by vanillin dehydrogenase (VDH). When high concentrations of obtained were 920 mg/l and 237 mg/l, respectively (Lesage-
ferulic acid are provided, the activity of ferulic acid–degrading Meessen et al., 1996).
enzymes is much higher in this strain compared with VDH,
directing the metabolic flow toward accumulation of vanillin. The influence of the use of different genetic approaches to achieve
This makes S. setonii a good candidate for the production of high gene expression including plasmid copy number and pro-
vanillin on an industrial scale. moters regulating genes involved in vanillin synthesis has been
studied in recombinant E. coli. When the E. coli strain JM109
Several approaches have been taken to impair the undesired con- was engineered with a low copy number vector pBB1 carrying
version of vanillin into vanillic acid. In Pseudomonas strains, this the Fcs and Ech genes isolated from P. fluorescens BF13
was explored by mutating the vdh gene encoding VDH (Di Gioia (Barghini et al., 2007), a final vanillin concentration of 2.52 g/l
et al., 2011). A higher concentration of vanillin accumulated in was obtained after 6 h of incubation by sequential induction with
recombinant P. putida BO14, which was engineered to have a 1.1 mM ferulic acid at resting cell conditions. To further improve
defective vdh gene (Okeke and Venturi, 1999). In the case of vanillin formation, an integrative vector pFR2 was constructed
P. fluorescens BF13, in which expression of the vdh gene was carrying the Fcs and Ech genes stably integrated into the lacZ
blocked, a complete and simultaneous loss of the ability to gene of E. coli. The recombinant strain was stable and
metabolize ferulic acid and vanillin was observed. The effect more efficient in vanillin synthesis compared with the strain
was reversed on introduction of multiple copies of the Fsc gene. expressing genes encoding ferulic acid catabolizing enzymes
This gene encodes feruloyl aldehyde dehydrogenase, which from a low copy vector. The recombinant strain produced 6.6 kg
catalyzes the activation of ferulic acid to the corresponding CoA vanillin per 1 kg biomass in resting cells (Ruzzi et al., 1997).
ester, feruloyl-CoA. The recombinant P. fluorescens BF13 was
able to utilize ferulic acid and yielded up to 1.28 g/l vanillin in a PRODUCTION OF VANILLIN FROM
stirred tank reactor after 8 h (Di Gioia et al., 2011). A mutant of
EUGENOL AND ISOEUGENOL
P. fluorescens 103, with impaired VDH activity (vdh), was unable
to utilize ferulic acid in a similar manner to the wild-type A major drawback of ferulic acid–based vanillin production in
P. fluorescens BF1. It was suggested that this effect was due microorganisms is the high cost of ferulic acid. Eugenol and
to the inactivation of 4-hydroxycinnamate-CoA ligase, 4CL isoeugenol may be used as alternative substrates for vanillin for-
(Martinez-Cuesta et al., 2005), which is also known to catalyze mation because oxidative metabolism of the two compounds by
the activation of ferulic acid to the corresponding CoA ester, microorganisms in nature proceeds with ferulic acid and vanillin
feruloyl-CoA. These observations indicate that inactivation of as intermediates. Eugenol (2-methoxy-4-(2-propenyl)-phenol) is
the vdh gene affects the expression of other upstream genes the principal component of clove oil prepared from the clove
that are essential for catabolism of ferulic acid in Pseudomonas tree, Syzgium aromaticum, and is isolated on an industrial scale
strains; especially the reaction of ferulic acid activation to (Bauer et al., 2008). The market price is as low as US$5/kg for
feruloyl-CoA seems to be compromised. clove oil and around US$50/kg for isolated eugenol. The
starting materials for vanillin production based on eugenol are
The mutation-based approaches undertaken to impair undesired thus a lot cheaper for biotechnology-derived vanillin production
oxidation of vanillin into vanillic acid are challenging because than ferulic acid. Eugenol is considered a GRAS compound
some microorganisms possess more than one Vdh gene. vdh when used as a food additive and accordingly has developed
mutants of Pseudomonas sp. strain HR199 and P. putida into a popular precursor for industrial production of vanillin using
KT2440 were able to oxidize vanillin, indicating the existence of microorganisms (fda.gov).
additional VDH-like enzymes with overlapping functional activ-
ities. Accordingly, microorganisms that lack the ability to convert Bioconversion of Eugenol to Ferulic Acid and Vanillin
vanillin into vanillic acid when the Vdh gene is functionally The oxidative catabolism of eugenol has been studied in a num-
impaired are good candidates for bioengineering. For example, ber of different microorganisms. In Pseudomonas, the enzymes
the vdh-deletion mutant of Amycolatopsis sp. ATCC 39116 re- and the corresponding structural genes have been identified.
sulted in a two to three times higher yield of vanillin than the The catabolism of eugenol in Pseudomonas strains proceeds
wild-type strain. It was demonstrated that the Amycolatopsis sequentially via coniferyl alcohol, coniferyl aldehyde, ferulic
sp. ATCC 39116, VDH, specifically catalyzes vanillin oxidation acid, vanillin, and vanillic acid to protocatechuic acid. Protocate-
without being involved in ferulic acid activation (Fleige et al., chuic acid is further catabolized by ortho cleavage (Tadasa, 1977;
2013). The oxidation of vanillin to vanillic acid was strongly Priefert et al., 1997; Achterholt et al., 1998; Overhage et al., 1999;
reduced when Vdh gene was impaired in Amycolatopsis sp. Priefert et al., 1999).
ATCC 39116. Consequently, Amycolatopsis sp. ATCC 39116 is
a suitable microorganism to be optimized for industrial vanillin Eugenol degradation in Pseudomonas involves two oxidation
production by further bioengineering. steps. The initial step is the bioconversion of eugenol into
Molecular Plant 8, 40–57, January 2015 ª The Author 2015. 47
Molecular Plant Vanillin–Bioconversion and Bioengineering
Figure 5. Eugenol Degradation Pathway in
Pseudomonas.
Biotechnological Production of
Vanillin from Glucose
Despite no documented evidence for direct
bioconversion of glucose into vanillin by
microorganisms in nature, biosynthesis of
vanillin from glucose has been demon-
strated using both recombinant E. coli and
yeasts.
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