You are on page 1of 6

Plant Science 298 (2020) 110572

Contents lists available at ScienceDirect

Plant Science
journal homepage: www.elsevier.com/locate/plantsci

Review article

Review: Crucial role of inorganic pyrophosphate in integrating carbon T


metabolism from sucrose breakdown to starch synthesis in rice endosperm
Sang-Kyu Lee, Jong-Seong Jeon*
Graduate School of Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin 17104, South Korea

A R T I C LE I N FO A B S T R A C T

Keywords: The endosperm is a primary constituent of mature seeds in rice as well as in other cereal crops, serving as the
Hypoxia major storage reserve of starch. Observations indicate that the central part of the endosperm is subject to hypoxic
Carbon metabolism conditions, which require a switch of energy metabolism owing to limited mitochondrial respiration. Uniquely,
Cereal this endosperm generates a large source of inorganic pyrophosphate (PPi) as a byproduct of the reaction of ADP
Endosperm
glucose pyrophosphorylase in the cytosol. Recent results derived from examination of the mutants of cereal
Inorganic pyrophosphate
crops, especially rice, for PPi-utilizing enzymes clearly suggest an important role of PPi as an alternative energy
Rice
Starch currency for integrating carbon metabolism from sucrose breakdown to starch synthesis in the endosperm. Thus,
Sucrose the present review provides an outline of the interlaced PPi-dependent metabolic pathways, which are critical
for starch synthesis in the endosperm in terms of energy metabolism, along with its application to enhance yield
potential.

1. Introduction and maize, which similarly accumulate a large amount of starch as their
main reserve, but only a little in embryos, are commonly exposed to
Rice (Oryza sativa) is a staple food crop for half of the world’s po- hypoxic conditions, i.e. limited oxygen supply [4–8]. In cereal seeds,
pulation and, as one of the most important cereal crops, has become a the pericarp, which is a distinct layer, develops the chloroplasts that
model monocot plant because of its relatively small genome, completed drive photosynthesis, which can contribute to oxygenation. In contrast,
genome sequence, and a large amount of available molecular and ge- the central region of cereal endosperm is highly hypoxic (for example,
netic resources. The endosperm is a primary component of mature plant falling to < 5 μM oxygen in barley endosperm), unlike in the photo-
seeds and is an important organ for the storage of food reserves, mostly synthetically active pericarp where hypoxia does not occur [8]. At
in the form of starch. It is therefore valuable to elucidate the mechanism night, hypoxia increases in the central region of cereal endosperm
of starch synthesis in the endosperm [1]. (< 2 μM oxygen in barley endosperm). Thus, during the starch synth-
Recent studies have provided detailed information on the cellular esis phase, the reduced level of oxygen in the endosperm causes a de-
and morphological features of developing rice seed [2,3]. Through crease in cellular energy status. Due to the overall similar seed struc-
coenocytic nuclear division in the first two days after pollination (DAP), tures and physiology of rice and the aforementioned cereal crops, the
and cellularization in three to five DAP, storage products accumulate hypoxic condition in the central region of the endosperm is most likely
concurrently with the differentiation of aleurone and starchy en- a universal feature among these crop species. The localized difference
dosperm cells from six to 20 DAP. Starch synthesis initiates from the between the central and peripheral environments of the endosperm
central region of the endosperm and continues gradually towards the may require a clear switch from central carbon metabolism [glycolysis
peripheral region. At approximately 21 DAP, the endosperm enters the and the tricarboxylic acid (TCA) cycle] to alcoholic fermentation within
desiccation mature phase until 30 DAP. This phase is characterized by the central endosperm, as demonstrated in a dynamic proteomic ana-
tightly coordinated developmental and metabolic changes, mainly re- lysis of developing rice endosperms [9].
lated to the accumulation of starch, but a comprehensive understanding A supply of oxygen is necessary for sufficient production of the
of the underlying mechanisms is still lacking. energy currency adenosine triphosphate (ATP) from mitochondrial re-
Although relatively less detailed information is available for rice, spiration through central carbon metabolism in heterotrophic organs,
the endosperms of other examined cereal crops, such as wheat, barley, such as roots and seeds, in which photosynthesis is not active. In


Corresponding author.
E-mail address: jjeon@khu.ac.kr (J.-S. Jeon).

https://doi.org/10.1016/j.plantsci.2020.110572
Received 10 April 2020; Received in revised form 28 May 2020; Accepted 19 June 2020
Available online 25 June 2020
0168-9452/ © 2020 The Author(s). Published by Elsevier B.V. This is an open access article under the CC BY license
(http://creativecommons.org/licenses/BY/4.0/).
S.-K. Lee and J.-S. Jeon Plant Science 298 (2020) 110572

Fig. 1. Outlines of the starch synthetic pathway from sucrose breakdown in the central endosperm region, under hypoxic conditions, in rice. Cereal crops possess a
cytosolic form of ADG-Glc pyrophosphorylase (AGP) that mainly functions in producing ADP-Glc and inorganic pyrophosphate (PPi) in the endosperms. ADP-Glc is
imported to the amyloplast by the ADP-Glc transporter, BT1, via counter-exchange with ADP, and used for starch synthesis in the organelle. PPi is consumed by UDP-
Glc pyrophosphorylase (UGP) coupled with sucrose synthase (SUS) to generate Glc-1-P, which stimulates the production of ADP-Glc via the cytosolic activity of AGP.
ATP is supplied from the glycolysis pathway via PPi-dependent fructose-6-phosphate 1-phosphotransferase (PFP) and pyruvate, orthophosphate dikinase (PPDK) by
recycling NAD+ from a noncyclic mode of the TCA cycle via cytosolic Alanine aminotransferase (cAlaAT) and Malate dehydrogenase (cMDH). PPi and its utilizing
key enzymes are indicated in red and blue, respectively (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of
this article).
AGP = ADP-Glc pyrophosphorylase; BT1 = ADP-glucose transporter; ADP-Glc = ADP-glucose; PFK = ATP-dependent phosphofructokinase; cAlaAT = cytosolic
alanine aminotransferase; cAspAT = cytosolic aspartate aminotransferase; cwINV = cell wall invertase; cMDH = cytosolic malate dehydrogenase; NIN = neutral
invertase; cPPDK = cytosolic pyruvate, orthophosphate dikinase; F1,6 P = fructose-1-6-bisphosphate; F6 P = fructose-6-phosphate; G1 P = glucose-1-phosphate; G6
P = glucose-6-phosphate; HXK = hexokinase; mMDH = mitochondrial malate dehydrogenase; PEP = phosphoenolpyruvate; PFP = PPi-dependent fructose-6-
phosphate 1-phosphotransferase; PK = pyruvate kinase; SUS = sucrose synthase; UDP-Glc = UDP-glucose; UGP = UDP-Glc pyrophosphorylase.

particular, to rapidly accumulate a large amount of starch, the cereal serves as a glucosyl donor during α-1,4-glucan synthesis (Fig. 1). While
endosperm demands a considerable amount of ATP in producing ADP- prokaryotic AGPs are homotetramers composed of four identical sub-
glucose (ADP-Glc), the direct precursor of starch synthesis. However, units [15], in higher plants AGPs exist as heterotetramers consisting of
low ATP production due to the hypoxic conditions in the endosperm each two large (LSU) and small (SSU) subunits [16–18]. AGPs are
cannot sufficiently meet the demand of ATP-consuming cellular meta- present in the plastids of all plant species, but some isoforms function
bolic processes [8]. As a potential strategy to cope with this energy uniquely in the endospermic cytosol of cereal crops, in addition to
crisis, the induction of inorganic pyrophosphate (PPi)-utilizing enzyme grasses [19–22], with only one cytosolic LSU and SSU isoform evolving
reactions has been proposed for cells and tissues enduring hypoxic in each species. Interestingly, one of the major SSU genes produces two
conditions [10–12]. PPi is produced as a byproduct of biosynthetic distinct isoforms harboring different first exons, one of which possesses
pathways in the cytosol and also in many other subcellular organelle a transit peptide that directs it to leaf chloroplasts, and the other in the
compartments [13,14]. Uniquely, the endosperm in cereal crops, as endospermic cytosol [22–25]. It is evident in rice and other cereal crops
well as in grasses, generates a large source of PPi from the ADP glucose that all of the cytosolic AGP null mutants, including shrunken2 or
pyrophosphorylase (AGP) reaction in the cytosol, which can drive PPi- brittle2, contain low levels of starch in their endosperm because of low
utilizing pathways (see Section 2) (Fig. 1). AGP activity (Table 1). This assertion is well supported by the fact that
There have recently been a number of functional studies on the the mutations of the ADP-Glc transporter, which transports ADP-Glc
endosperm mutants for PPi-utilizing enzymes in rice and also in other from the cytosol into plastids, cause low starch levels in the endosperm
cereal crops (Table 1). However, some of these reports focused only on in brittle1 (Fig. 1) [26–29]. Despite the importance of starch synthesis in
the molecular and genetic roles of the enzymes but neglected their the endosperm, the reason for the cytosolic production of ADP-Glc is
crucial roles in hypoxic endosperm conditions. Thus, the present review rarely discussed.
revisits those previous studies and proposes that PPi plays an important In general, one ATP is required to produce one ADP-Glc from Glc-1-
role, as an alternative of ATP, in integrating carbon metabolism from P. Given that the endosperm is exposed to hypoxic conditions in rice
sucrose breakdown to starch synthesis in the endosperm. and other cereal crops, ATP may not be sufficiently supplied through
central carbon metabolism in the absence of aerobic respiration. The
activity of one of the TCA cycle enzymes, citrate synthase, is decreased
2. Supply of a source of PPi by cytosolic ADP glucose
by 85 %, leading to a 60 % reduction in respiration between six to 10
pyrophosphorylase
DAP in wheat endosperm [30]; this is consistent with a decrease in the
density of cristae in mitochondria between four to 16 DAP in wheat
It is widely known that AGP plays a key role in starch synthesis. AGP
endosperm [31]. The reduction in mitochondrial respiration is also
catalyzes the important regulatory step that produces ADP-Glc and PPi
corroborated by the phenotype of cytosolic AGP mutants in rice, which
using glucose-1-phosphate (Glc-1-P) and ATP. The resulting ADP-Glc

2
S.-K. Lee and J.-S. Jeon Plant Science 298 (2020) 110572

Table 1
Functional studies of the genes involved in PPi-dependent energy metabolism of starch biosynthesis in cereal endosperms.
Enzyme Species Accession or locus number Mutant phenotype Reference

cytosolic AGP SSU Oryza sativa LOC_Os08g25734 Shrunken endosperm in null mutant (osagps2) [22]
Hordeum vulgare P55238 Shrunken endosperm in null mutant (Risø16) [23]
Zea mays AAK69627 Shrunken endosperm in null mutant (Brittle2) [25]
cytosolic AGP LSU Oryza sativa LOC_Os01g44220 Shrunken endosperm in null mutant (osagpl2) [22]
SUS Zea mays GRMZM2G089713 Shrunken endosperm in null mutant (Shrunken) [34]
UGP Oryza sativa LOC_Os02g02560 Opaque endosperm in null mutant (floury endosperm 8) [38,39]
PFP1 Oryza sativa LOC_Os06g13810 Opaque endosperm in null mutant (pfp1) [44,45]
cytosolic PPDK Oryza sativa LOC_Os05g33570 Opaque endosperm in null mutant (floury endosperm 4) [48,49]
Zea mays GRMZM2G306345 Opaque endosperm in null mutant (pdk1, pdk2) [50]
cytosolic AlaAT Oryza sativa LOC_Os10g25130 Opaque endosperm in null mutant (osalaat1)/ Increased seed weight in overexpression line [54,55]
Hordeum vulgare Z26322.1 Increased seed weight in overexpression line [65]
cytosolic MDH Oryza sativa LOC_Os10g33800 Opaque endosperm in null mutant (floury endosperm 16)/ Increased seed weight in [63]
overexpression line
V-PPase Oryza sativa LOC_Os05g06480 Chalky opaque endosperm in Zhenshan97 carrying high expression QTL (Chalk5) [64]

AGP SSU = ADP glucose pyrophosphorylase small subunit; AGP LSU = ADP glucose pyrophosphorylase large subunit; SUS = sucrose synthase; UGP = UDP-Glc
pyrophosphorylase; PEP = phosphoenolpyruvate; PPDK = pyruvate, orthophosphate dikinase; AlaAT = alanine aminotransferase; MDH = malate dehydrogenase;
V-PPase = PPi-dependent vacuolar proton pump.

accumulate near normal levels of starch in the peripheral endosperm cytosol, the amount of UDP-Glc appears to increase in Arabidopsis
region that can diffuse oxygen from the surface, but almost no starch in seedlings [40]. This finding may suggest a reversible UGP function that
the central interior region of the endosperm (Table 1) [8,22]. These can balance the direction of metabolic processes towards either supply
findings suggest an important role of cytosolic AGP isoforms in the or consumption of PPi to adjust AGP-Glc formation. It is also worth
endosperm at low oxygen level; that is, in the hypoxic endosperm considering that SUS can directly produce ADP-Glc at a cost of ATP for
conditions that limit ATP production, the supply of PPi by the cytosolic starch synthesis [41].
AGP can be an alternative energy source to drive starch synthesis.

4. PPi-driven glycolysis
3. PPi-utilizing UDP-glucose pyrophosphorylase coupled with
sucrose synthase In hypoxic endosperm conditions, the limitation of ATP production
favors PPi-driven glycolysis to generate ATP. Among a number of en-
Starch synthesis in the endosperm relies on a supply of sucrose zymes involved in glycolysis, two PPi-utilizing enzymes, the mutants of
transported from photosynthetic leaf tissues. The site of phloem un- which have been well characterized, are PPi-dependent fructose-6-
loading in rice occurs in the vascular system on the ventral side of the phosphate 1-phosphotransferase (PFP; also called PPi-dependent
ovary, where sucrose is cleaved by cell wall invertase (cwINV) prior to phosphofructokinase) and pyruvate, orthophosphate dikinase (PPDK).
being transported into the endosperm (Fig. 1). The function of invertase These enzymes are highly expressed in cereal endosperms.
(INV) is particularly advantageous in the early stages of endosperm Interestingly, some energy-poor anaerobic microorganisms, such as the
development during cellularization and cell expansion [32,33]. As the bacterium Priopionibacterium shermanii and the parasitic amoeba
endosperm matures to the starch synthesis phase, a switch to sucrose Entamoeba histolytica, possess only PFP and PPDK, instead of ATP-de-
synthase (SUS)-dependent sucrose cleavage is observed as an adapta- pendent phosphofructokinase (PFK) and pyruvate kinase (PK), respec-
tion to the hypoxic conditions [34]. SUS-dependent sucrose cleavage tively [42]. This suggests a potential role of these PPi-utilizing enzymes
requires one ATP, reducing the ATP cost in the hypoxic endosperms, in energy-saving metabolism under oxygen deficiency. Using ATP, PFK
while INV-dependent sucrose cleavage demands two ATPs to phos- catalyzes the irreversible reaction to produce fructose-1-6-bisphosphate
phorylate two hexoses. Consistently, hypoxic environments repress the (F-1,6-P) from fructose-6-phosphate (F-6-P). Instead of ATP, PFP in-
expression of INV and up-regulate SUS expression [35,36]. However, terconverts F-6-P to F-1,6-P by using PPi. PFP activity is highly in-
mutations in the rice Grain-filling gene1 and the maize Miniature1 for creased in anoxically germinating rice coleoptiles [10]. The opaque
cwINV, and the maize Shrunken1 for SUS, are still capable of activating endosperm phenotype in the maize bZIP transcription factor mutant
starch synthesis (Table 1), suggesting a clear redundancy between these opaque2 is alleviated by upregulating PFP in the endosperm [43]. The
two sucrose cleavage pathways in the endosperm. rice PFP mutants, pfp1-1, pfp1-2 and pfp1-3 have been shown to exhibit
During the starch accumulation phase of the endosperm under hy- opaque endosperms (Table 1) [44,45]. Given that PFP activity increases
poxic conditions, PPi-utilizing UDP-glucose pyrophosphorylase (UGP) under low oxygen conditions, the limitation of ATP may induce PPi-
functions actively in catalyzing the formation of Glc-1-P, a substrate for utilizing PFP activity to reduce the cost of ATP in the endosperm.
AGP reaction in starch synthesis, from the UDP-glucose (UDP-Glc) PK is a key enzyme that produces pyruvate and ATP using phos-
produced in the SUS-dependent sucrose cleavage (Fig. 1). UGP has phoenolpyruvate (PEP) and ADP in glycolysis. The biological function
around a 40-fold higher activity than SUS in cereal endosperms, in- of PK has been studied little due to the presence of many isoforms in
cluding those of rice, wheat, and maize, under hypoxic conditions [37]. plants [46]. PPDK, an enzyme similar to PK, catalyzes a reversible re-
The UGP reaction coupled with SUS to produce Glc-1-P may be ensured action to produce pyruvate and ATP from PEP, AMP, and PPi (Fig. 1).
by the supply of sufficient PPi released from cytosolic AGP activity, Rice, has two PPDK genes, one encoding OsPPDKA and another pro-
which stimulates cytosolic ADP-Glc formation. Thus, the concerted ducing two transcripts of chloroplastic PPDK (chOsPPDKB) and cyto-
metabolic process of SUS-UGP-AGP that ensures the effective use of PPi solic PPDK (cyOsPPDKB) [47]. Among them, mutations of the cytosolic
is greatly advantageous for starch synthesis in the hypoxic endosperm form of OsPPDKB, which is predominant in rice endosperm, are char-
(Fig. 1). Mutations of a rice UGP isoform, floury endosperm8, have been acterized by opaque endosperm (Table 1) [9,48,49]. Although there is
shown to exhibit a chalky opaque endosperm because of impaired no direct evidence that the endosperm-preferential cytosolic PPDK is
starch synthesis (Table 1), revealing its important role in starch induced under hypoxic conditions, it clearly functions as a key enzyme
synthesis [38,39]. Notably, when levels of PPi become low in the in the PPi-dependent glycolytic pathway. An opaque seed phenotype is

3
S.-K. Lee and J.-S. Jeon Plant Science 298 (2020) 110572

also conditioned by PPDK deficiency in maize [50]. OsPPDKA is upre- cereal crops. Recently, direct evidence of the importance of PPi-uti-
gulated in germinating rice seedlings under oxygen-deficiency condi- lizing enzymes for starch synthesis in the endosperm has come from
tions, but its function in endosperm is unknown [51]. examination of their genetic mutants. The results presented herein
provide solid evidence regarding the crucial roles of the PPi-dependent
5. Alternative pyruvate-consuming metabolic flux using cytosolic interlaced metabolic flux of SUS-UGP-AGP, and the PPi-dependent
alanine aminotransferase and malate dehydrogenase glycolysis via PFP and cPPDK coupled with the non-cyclic mode of the
TCA cycle via cAlaAT and cMDH, both of which sustain glycolytic flux
Glycolysis is activated to increase ATP level via the PPi-dependent and thus adequate levels of ATP in the endosperm (Fig. 1). Thus, in
PFP and PPDK in hypoxic endosperm conditions. This process leads to a terms of energy metabolism, impaired ADP-Glc synthesis can affect the
high production of pyruvate, but the activity of the TCA cycle remains supply of PPi, the alternative metabolic energy supply, which may lead
low under hypoxic conditions [8,52]. As an alternative process, the to an inactivation of these entire PPi-dependent energy metabolic
accumulated pyruvate is metabolized by a cytosolic alanine amino- processes. To further support the crucial role of the proposed PPi-uti-
transferase (cAlaAT) in cereal endosperm cells. cAlaAT catalyzes a re- lizing energy metabolism in cereal endosperms, the other enzymes of
versible conversion reaction of glutamate and pyruvate to alanine and this pathway whose endosperm mutants have not yet been character-
2-oxoglutarate. Expression of cAlaAT is induced at the starch accumu- ized need to be examined. One of these additional enzymes is fructose-
lation phase in hypoxic endosperm conditions [53–55]. Rapid produc- 6-phosphate-2-kinase/fructose-2,6-bisphosphatase, which can regulate
tion of alanine by cAlaAT keeps glycolysis active through the con- the first important glycolysis-committed step to F-1,6-P by producing
sumption of pyruvate (Fig. 1). Thus, cAlaAT functions as a key enzyme F2,6-P.
that can determine the direction of the metabolic flux in the endosperm It is worth noting the possible function of the vacuolar PPi-depen-
[8]. Mutants of alanine aminotransferase 1 (OsAlaAT1), a cytosolic dent proton pump (V-PPase), which can replace the vacuolar ATP-de-
isoform that is the most highly expressed among the five AlaAT genes in pendent proton pump (V-ATPase). Under low oxygen conditions, the V-
rice endosperm, have been shown to exhibit opaque endosperm PPase can be important to prevent a rapid decrease in the cytosolic pH
(Table 1) because of altered starch structure [54,55]. The resulting 2- when H+-ATPase is inhibited due to ATP deficiency. The V-PPase is
oxoglutarate and glutamate are further metabolized to aspartate and strongly induced in oxygen-deficient rice tissues [51]. Interestingly,
oxaloacetate by aspartate aminotransferase (AspAT), which is highly elevated activity of the V-PPase, coding for a dominant Chalk5 allele,
expressed in the endosperm [56]. causes endospermic opacity in rice, possibly by disturbing the pH
An increase in fermentation activity in hypoxic endosperms is im- homeostasis in the endosperm, which is coupled with a great increase in
portant for maintaining glycolysis by supplying NAD+ to sustain ATP at small vesicle-like structures, thus forming air spaces among endosperm
a level that is adequate for starch synthesis [9]. In addition to the fer- storage substances and resulting in a chalky endosperm (Table 1) [64].
mentation process, a metabolite profiling analysis of the hypoxic cen- However, it is debatable whether this unexpected increase of V-PPase
tral part of barley endosperm revealed an important pyruvate-con- may lead to the depletion of PPi in the cytosol and disturb starch
suming process that is a non-cyclic mode of the TCA cycle via cytosolic synthesis that leads to the mutant endosperm (Fig. 1). Whether or not
isoforms of cAlaAT and malate dehydrogenase (cMDH), in addition to its contribution in energy metabolism is critical remains unanswered.
mitochondrial MDH (mMDH) [8]. cMDH reversibly catalyzes the re- Opaque endosperm in rice and other cereal crops is a major problem
duction of oxaloacetate to malate while oxidizing NAD(P)H to NAD readily influenced by environmental factors, such as temperature and
(P)+. In general, cMDH is known as a key component of ‘malate valves’, field fertility, and is an undesirable trait for human food that negatively
which act as systems for balancing the ATP/NAD(P)H ratio by recycling affects milling, cooking, and eating. A number of endosperm mutants
malate between the cytosol and organelles, including mitochondria involved in the PPi-dependent metabolic fluxes typically exhibited
[57]. Malate is highly accumulated in cereal endosperms [58–60]. It opacity, suggesting an important role of these metabolic fluxes for
may be possible that oxaloacetate is synthesized by phosphoenolpyr- normal endosperm development under stress conditions. Another in-
uvate carboxylase (PEPC) spending CO2, which then converts to malate teresting observation in the context of biotechnology is that over-
in the cytosol. However, this assumption is not reliable because of the expression of some of these PPi-utilizing enzymes increases starch
much higher activity of cMDH compared to PEPC activity [58,59]. synthesis and seed weight. Thus, the constitutive activation of the PPi-
Thus, it is most likely that pyruvate is converted into oxaloacetate by dependent pathways may provide an effective way to enhance yield
the concerted action of cAlaAT and AspAT, and further converted to potential, as already demonstrated in AlaAT [55,65] and MDH [63]
malate by cMDH to supply the electron acceptors needed to produce transgenic lines (Table 1), as well as in SUS- or AGP-overexpressing
ATP from glycolysis. In this process, cMDH drives the reaction from transgenic lines [66,67]
oxaloacetate and NADH to malate and NAD+ than the reverse reaction Lastly, it is worth noting that programmed cell death (PCD) occurs
in the endosperm under energy-deficient hypoxic conditions (Fig. 1) simultaneously with the rapid accumulation of starch from the central
[8,61]. A reduction of cytosolic MDH activity under oxidizing condi- part to the peripheral region of rice endosperm [3]. Most likely, PCD in
tions supports this observation [62], and mutations in cytosolic MDH rice endosperm occurs in a non-lytic manner that nuclei and other or-
have been shown to result in severely opaque endosperms (Table 1) ganelles remain functional during this process [68,69], which may
[63], revealing the important role of the pyruvate-consuming metabolic allow starch synthesis to occur in a large endosperm compartment with
flux via cAlaAT and cMDH in cereal endosperms. a shared cytoplasm. Thus, it would be interesting to investigate a
contribution of PPi-dependent metabolic pathways for starch synthesis
6. Conclusion and future prospects during PCD process in rice endosperm.

Although the starch of cereal endosperms accounts for most of the Declaration of Competing Interests
carbohydrates that humans consume, we are still far from fully un-
derstanding carbon metabolism. The functions of some amyloplastic
All of the authors have read the manuscript and declare no conflict
enzymes in starch synthesis, including starch synthases, starch
branching enzymes, and starch debranching enzymes, are relatively of interest.
well known. However, the most important question regarding the
supply of energy required for synthesizing a pool of ADP-Glc, the direct Acknowledgments
precursor and building block of starch, has not been clearly answered in
regard to the hypoxic endosperm conditions in rice as well as in other This work was supported by grants from the Next Generation

4
S.-K. Lee and J.-S. Jeon Plant Science 298 (2020) 110572

BioGreen 21 program (Project No. PJ013172012019), the Rural small subunit of ADP-glucose pyrophosphorylase, reveals the importance of the
Development Administration, and the Mid-Career Researcher program cytosolic isoform and the identity of the plastidial small subunit, Plant Physiol. 131
(2003) 684–696, https://doi.org/10.1104/pp.013094.
(Project No. 2020R1A2C2012976), National Research Foundation of [24] R.A. Burton, P.E. Johnson, D.M. Beckles, G.B. Fincher, H.L. Jenner, M.J. Naldrett,
Korea. K. Denyer, Characterization of the genes encoding the cytosolic and plastidial forms
of ADP-Glucose pyrophosphorylase in wheat endosperm, Plant Physiol. 130 (2002)
1464–1475, https://doi.org/10.1104/pp.010363.
References [25] S. Rösti, K. Denyer, Two paralogous genes encoding small subunits of ADP-glucose
pyrophosphorylase in Maize, Bt2 and L2, replace the single alternatively spliced
[1] J.-S. Jeon, N. Ryoo, T.-R. Hahn, H. Walia, Y. Nakamura, Starch biosynthesis in gene found in other cereal species, J. Mol. Evol. 65 (2007) 316–327, https://doi.
cereal endosperm, Plant Physiol. Biochem. PPB. 48 (2010) 383–392, https://doi. org/10.1007/s00239-007-9013-0.
org/10.1016/j.plaphy.2010.03.006. [26] N.J. Patron, B. Greber, B.F. Fahy, D.A. Laurie, M.L. Parker, K. Denyer, The lys5
[2] X. Wu, J. Liu, D. Li, C.-M. Liu, Rice caryopsis development I: dynamic changes in mutations of barley reveal the nature and importance of plastidial ADP-Glc trans-
different cell layers, J. Integr. Plant Biol. 58 (2016) 772–785, https://doi.org/10. porters for starch synthesis in cereal endosperm, Plant Physiol. 135 (2004)
1111/jipb.12440. 2088–2097, https://doi.org/10.1104/pp.104.045203.
[3] X. Wu, J. Liu, D. Li, C.-M. Liu, Rice caryopsis development II: dynamic changes in [27] J.C. Shannon, F.M. Pien, H. Cao, K.C. Liu, Brittle-1, an adenylate translocator, fa-
the endosperm, J. Integr. Plant Biol. 58 (2016) 786–798, https://doi.org/10.1111/ cilitates transfer of extraplastidial synthesized ADP-glucose into amyloplasts of
jipb.12488. maize endosperms, Plant Physiol. 117 (1998) 1235–1252, https://doi.org/10.
[4] H. Rolletschek, W. Weschke, H. Weber, U. Wobus, L. Borisjuk, Energy state and its 1104/pp.117.4.1235.
control on seed development: starch accumulation is associated with high ATP and [28] C.G. Bowsher, E.F.A.L. Scrase-Field, S. Esposito, M.J. Emes, I.J. Tetlow,
steep oxygen gradients within barley grains, J. Exp. Bot. 55 (2004) 1351–1359, Characterization of ADP-glucose transport across the cereal endosperm amyloplast
https://doi.org/10.1093/jxb/erh130. envelope, J. Exp. Bot. 58 (2007) 1321–1332, https://doi.org/10.1093/jxb/erl297.
[5] J.T. van Dongen, G.W. Roeb, M. Dautzenberg, A. Froehlich, H. Vigeolas, [29] B. Cakir, S. Shiraishi, A. Tuncel, H. Matsusaka, R. Satoh, S. Singh, N. Crofts,
P.E.H. Minchin, P. Geigenberger, Phloem import and storage metabolism are highly Y. Hosaka, N. Fujita, S.-K. Hwang, H. Satoh, T.W. Okita, Analysis of the rice
coordinated by the low oxygen concentrations within developing wheat seeds, Plant ADPglucose transporter (OsBT1) indicates the presence of regulatory processes in
Physiol. 135 (2004) 1809–1821, https://doi.org/10.1104/pp.104.040980. the amyloplast stroma that control ADPglucose flux into starch, Plant Physiol. 170
[6] H. Rolletschek, K. Koch, U. Wobus, L. Borisjuk, Positional cues for the starch/lipid (2016) 2088–2097, https://doi.org/10.1104/pp.15.01911.
balance in maize kernels and resource partitioning to the embryo, Plant J. 42 [30] M.J. Emes, C.G. Bowsher, C. Hedley, M.M. Burrell, E.S.F. Scrase-Field, I.J. Tetlow,
(2005) 69–83, https://doi.org/10.1111/j.1365-313X.2005.02352.x. Starch synthesis and carbon partitioning in developing endosperm, J. Exp. Bot. 54
[7] L. Borisjuk, H. Rolletschek, The oxygen status of the developing seed, New Phytol. (2003) 569–575, https://doi.org/10.1093/jxb/erg089.
182 (2009) 17–30, https://doi.org/10.1111/j.1469-8137.2008.02752.x. [31] L.G. Briarty, C.E. Hughes, A.D. Evers, The developing endosperm of wheat-A ste-
[8] H. Rolletschek, G. Melkus, E. Grafahrend-Belau, J. Fuchs, N. Heinzel, F. Schreiber, reological analysis, Ann. Bot. 44 (1979) 641–658, https://doi.org/10.1093/
P.M. Jakob, L. Borisjuk, Combined noninvasive imaging and modeling approaches oxfordjournals.aob.a085779.
reveal metabolic compartmentation in the barley endosperm, Plant Cell 23 (2011) [32] W.H. Cheng, E.W. Taliercio, P.S. Chourey, The Miniature1 seed locus of maize en-
3041–3054, https://doi.org/10.1105/tpc.111.087015. codes a cell wall invertase required for normal development of endosperm and
[9] S.B. Xu, T. Li, Z.Y. Deng, K. Chong, Y. Xue, T. Wang, Dynamic proteomic analysis maternal cells in the Pedicel, Plant Cell 8 (1996) 971–983, https://doi.org/10.
reveals a switch between central carbon metabolism and alcoholic fermentation in 1105/tpc.8.6.971.
rice filling grains, Plant Physiol. 148 (2008) 908–925, https://doi.org/10.1104/pp. [33] E. Wang, J. Wang, X. Zhu, W. Hao, L. Wang, Q. Li, L. Zhang, W. He, B. Lu, H. Lin,
108.125633. H. Ma, G. Zhang, Z. He, Control of rice grain-filling and yield by a gene with a
[10] E. Mertens, Y. Larondelle, H.G. Hers, Induction of pyrophosphate: fructose 6- potential signature of domestication, Nat. Genet. 40 (2008) 1370–1374, https://
phosphate 1-phosphotransferase by anoxia in rice seedlings, Plant Physiol. 93 doi.org/10.1038/ng.220.
(1990) 584–587, https://doi.org/10.1104/pp.93.2.584. [34] B. Springer, W. Werr, P. Starlinger, D.C. Bennett, M. Zokolica, M. Freeling, The
[11] M. Stitt, Pyrophosphate as an energy donor in the cytosol of plant cells: an enig- Shrunken gene on chromosome 9 of Zea mays L is expressed in various plant tissues
matic alternative to ATP, Bot. Acta 111 (1998) 167–175, https://doi.org/10.1111/ and encodes an anaerobic protein, Mol. Gen. Genet. 205 (1986) 461–468, https://
j.1438-8677.1998.tb00692.x. doi.org/10.1007/bf00338083.
[12] A. Mustroph, N. Hess, R. Sasidharan, Hypoxic energy metabolism and PPi as an [35] Y. Zeng, Y. Wu, W.T. Avigne, K.E. Koch, Rapid repression of maize invertases by low
alternative energy currency, Plant Cell Monogr. (2014), pp. 165–184, https://doi. oxygen. Invertase/sucrose synthase balance, sugar signaling potential, and seedling
org/10.1007/978-3-7091-1254-0_9. survival, Plant Physiol. 121 (1999) 599–608, https://doi.org/10.1104/pp.121.2.
[13] L. Lorenzo-Orts, D. Couto, M. Hothorn, Identity and functions of inorganic and 599.
inositol polyphosphates in plants, New Phytol. (2019) 637–652, https://doi.org/10. [36] B. Ricard, J. Rivoal, A. Spiteri, A. Pradet, Anaerobic stress induces the transcription
1111/nph.16129. and translation of sucrose synthase in rice, Plant Physiol. 95 (1991) 669–674,
[14] F.M. Gutiérrez-Luna, E.E. Hernández-Domínguez, L.G. Valencia-Turcotte, https://doi.org/10.1104/pp.95.3.669.
R. Rodríguez-Sotres, Review: pyrophosphate and pyrophosphatases in plants, their [37] A. Mustroph, G. Albrecht, Tolerance of crop plants to oxygen deficiency stress:
involvement in stress responses and their possible relationship to secondary meta- fermentative activity and photosynthetic capacity of entire seedlings under hypoxia
bolism, Plant Sci. 267 (2018) 11–19, https://doi.org/10.1016/j.plantsci.2017.10. and anoxia, Physiol. Plant. 117 (2003) 508–520, https://doi.org/10.1034/j.1399-
016. 3054.2003.00051.x.
[15] J. Preiss, C. Lammel, E. Greenberg, Biosynthesis of bacterial glycogen, Arch. [38] M.-O. Woo, T.-H. Ham, H.-S. Ji, M.-S. Choi, W. Jiang, S.-H. Chu, R. Piao, J.-H. Chin,
Biochem. Biophys. 174 (1976) 105–119, https://doi.org/10.1016/0003-9861(76) J.-A. Kim, B.S. Park, H.S. Seo, N.-S. Jwa, S. McCouch, H.-J. Koh, Inactivation of the
90329-5. UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza
[16] T.W. Okita, P.A. Nakata, J.M. Anderson, J. Sowokinos, M. Morell, J. Preiss, The sativa L.), Plant J. 54 (2008) 190–204, https://doi.org/10.1111/j.1365-313X.2008.
subunit structure of potato tuber ADPglucose pyrophosphorylase, Plant Physiol. 93 03405.x.
(1990) 785–790, https://doi.org/10.1104/pp.93.2.785. [39] W. Long, B. Dong, Y. Wang, P. Pan, Y. Wang, L. Liu, X. Chen, X. Liu, S. Liu, Y. Tian,
[17] B.J. Smith-White, J. Preiss, Comparison of proteins of ADP-glucose pyropho- L. Chen, J. Wan, FLOURY ENDOSPERM8, encoding the UDP-glucose pyropho-
sphorylase from diverse sources, J. Mol. Evol. 34 (1992) 449–464, https://doi.org/ sphorylase 1, affects the synthesis and structure of starch in rice endosperm, J. Plant
10.1007/BF00162999. Biol. 60 (2017) 513–522, https://doi.org/10.1007/s12374-017-0066-3.
[18] P. Villand, O.A. Olsen, L.A. Kleczkowski, Molecular characterization of multiple [40] A. Ferjani, K. Kawade, M. Asaoka, A. Oikawa, T. Okada, A. Mochizuki,
cDNA clones for ADP-glucose pyrophosphorylase from Arabidopsis thaliana, Plant M. Maeshima, M.Y. Hirai, K. Saito, H. Tsukaya, Pyrophosphate inhibits gluconeo-
Mol. Biol. 23 (1993) 1279–1284 http://www.ncbi.nlm.nih.gov/pubmed/8292792. genesis by restricting UDP-glucose formation in vivo, Sci. Rep. 8 (2018) 1–10,
[19] T. Thorbjørnsen, P. Villand, K. Denyer, O.-A. Olsen, A.M. Smith, Distinct isoforms of https://doi.org/10.1038/s41598-018-32894-1.
ADPglucose pyrophosphorylase occur inside and outside the amyloplasts in barley [41] K. Schmölzer, A. Gutmann, M. Diricks, T. Desmet, B. Nidetzky, Sucrose synthase: a
endosperm, Plant J. 10 (1996) 243–250, https://doi.org/10.1046/j.1365-313X. unique glycosyltransferase for biocatalytic glycosylation process development,
1996.10020243.x. Biotechnol. Adv. 34 (2016) 88–111, https://doi.org/10.1016/j.biotechadv.2015.
[20] K. Denyer, F. Dunlap, T. Thorbjørnsen, P. Keeling, A.M. Smith, The major form of 11.003.
ADP-glucose pyrophosphorylase in maize endosperm is extra-plastidial, Plant [42] H.G. Wood, Inorganic pyrophosphate and polyphosphates as sources of energy, in:
Physiol. 112 (1996) 779–785, https://doi.org/10.1104/pp.112.2.779. R.L. Levine, A. Ginsburg (Eds.), Modul. by Mol. Interact, Academic Press, 1985, pp.
[21] R.A. Burton, P.E. Johnson, D.M. Beckles, G.B. Fincher, H.L. Jenner, M.J. Naldrett, 355–369, , https://doi.org/10.1016/B978-0-12-152826-3.50034-6.
K. Denyer, Characterization of the genes encoding the cytosolic and plastidial forms [43] X. Guo, K. Ronhovde, L. Yuan, B. Yao, M.P. Soundararajan, T. Elthon, C. Zhang,
of ADP-glucose pyrophosphorylase in wheat endosperm, Plant Physiol. 130 (2002) D.R. Holding, Pyrophosphate-dependent fructose-6-phosphate 1-phospho-
1464–1475, https://doi.org/10.1104/pp.010363. transferase induction and attenuation of Hsp gene expression during endosperm
[22] S.-K. Lee, S.-K. Hwang, M. Han, J.-S. Eom, H.-G. Kang, Y. Han, S.-B. Choi, M.- modification in quality protein maize, Plant Physiol. 158 (2012) 917–929, https://
H. Cho, S.H. Bhoo, G. An, T.-R. Hahn, T.W. Okita, J.-S. Jeon, Identification of the doi.org/10.1104/pp.111.191163.
ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf [44] E. Duan, Y. Wang, L. Liu, J. Zhu, M. Zhong, H. Zhang, S. Li, B. Ding, X. Zhang,
and seed endosperm of rice (Oryza sativa L.), Plant Mol. Biol. 65 (2007) 531–546, X. Guo, L. Jiang, J. Wan, Pyrophosphate: fructose-6-phosphate 1-phospho-
https://doi.org/10.1007/s11103-007-9153-z. transferase (PFP) regulates carbon metabolism during grain filling in rice, Plant Cell
[23] P.E. Johnson, N.J. Patron, A.R. Bottrill, J.R. Dinges, B.F. Fahy, M.L. Parker, Rep. 35 (2016) 1321–1331, https://doi.org/10.1007/s00299-016-1964-4.
D.N. Waite, K. Denyer, A low-starch barley mutant, risø 16, lacking the cytosolic [45] C. Chen, B. He, X. Liu, X. Ma, Y. Liu, H.Y. Yao, P. Zhang, J. Yin, X. Wei, H.J. Koh,

5
S.-K. Lee and J.-S. Jeon Plant Science 298 (2020) 110572

C. Yang, H.W. Xue, Z. Fang, Y. Qiao, Pyrophosphate-fructose 6-phosphate 1-phos- enzymes in the developing maize kernel, Physiol. Plant. 67 (1986) 247–252,
photransferase (PFP1) regulates starch biosynthesis and seed development via https://doi.org/10.1111/j.1399-3054.1986.tb02451.x.
heterotetramer formation in rice (Oryza sativa L.), Plant Biotechnol. J. 18 (2020) [57] R. Scheibe, Malate valves to balance cellular energy supply, Physiol. Plant. 120
83–95, https://doi.org/10.1111/pbi.13173. (2004) 21–26, https://doi.org/10.1111/j.0031-9317.2004.0222.x.
[46] S.N. Oliver, J.E. Lunn, E. Urbanczyk-Wochniak, A. Lytovchenko, J.T. Van Dongen, [58] Y. Nakamura, K. Yuki, S.Y. Park, T. Ohya, Carbohydrate metabolism in the devel-
B. Faix, E. Schmälzlin, A.R. Fernie, P. Geigenberger, Decreased expression of cy- oping endosperm of rice grains, Plant Cell Physiol. 30 (1989) 833–839, https://doi.
tosolic pyruvate kinase in potato tubers leads to a decline in pyruvate resulting in an org/10.1093/oxfordjournals.pcp.a077813.
in vivo repression of the alternative oxidase, Plant Physiol. 148 (2008) 1640–1654, [59] P.K. Macnicol, J.V. Jacobsen, Endosperm acidification and related metabolic
https://doi.org/10.1104/pp.108.126516. changes in the developing barley grain, Plant Physiol. 98 (1992) 1098–1104,
[47] N. Imaizumi, M.S. Ku, K. Ishihara, M. Samejima, S. Kaneko, M. Matsuoka, https://doi.org/10.1104/pp.98.3.1098.
Characterization of the gene for pyruvate,orthophosphate dikinase from rice, a C3 [60] T.-T.Y. Liu, J.C. Shannon, Measurement of metabolites associated with non-
plant, and a comparison of structure and expression between C3 and C4 genes for aqueously isolated starch granules from immature Zea mays L. endosperm, Plant
this protein, Plant Mol. Biol. 34 (1997) 701–716, https://doi.org/10.1023/ Physiol. 67 (1981) 525–529, https://doi.org/10.1104/pp.67.3.525.
a:1005884515840. [61] W.C. Plaxton, H.T. Tran, Metabolic adaptations of phosphate-starved plants, Plant
[48] H.-G. Kang, S. Park, M. Matsuoka, G. An, White-core endosperm floury endosperm- Physiol. 156 (2011) 1006–1015, https://doi.org/10.1104/pp.111.175281.
4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate [62] J. Huang, A.K. Niazi, D. Young, L.A. Rosado, D. Vertommen, N. Bodra,
dikinase gene (OsPPDKB), Plant J. 42 (2005) 901–911, https://doi.org/10.1111/j. M.R. Abdelgawwad, F. Vignols, B. Wei, K. Wahni, T. Bashandy, L. Bariat, F. Van
1365-313X.2005.02423.x. Breusegem, J. Messens, J.P. Reichheld, Self-protection of cytosolic malate dehy-
[49] L. Zhang, L. Zhao, L. Lin, L. Zhao, Q. Liu, C. Wei, A novel mutation of OsPPDKB, drogenase against oxidative stress in Arabidopsis, J. Exp. Bot. 69 (2018)
encoding pyruvate orthophosphate dikinase, affects metabolism and structure of 3491–3505, https://doi.org/10.1093/jxb/erx396.
starch in the rice endosperm, Int. J. Mol. Sci. 19 (2018) 1–15, https://doi.org/10. [63] X. Teng, M. Zhong, X. Zhu, C. Wang, Y. Ren, Y. Wang, H. Zhang, L. Jiang, D. Wang,
3390/ijms19082268. Y. Hao, M. Wu, J. Zhu, X. Zhang, X. Guo, Y. Wang, J. Wan, FLOURY ENDOSPERM16
[50] R.R. Lappe, J.W. Baier, S.K. Boehlein, R. Huffman, Q. Lin, F. Wattebled, A. Mark encoding a NAD-dependent cytosolic malate dehydrogenase plays an important role
Settles, L. Curtis Hannah, L. Borisjuk, H. Rolletschek, J.D. Stewart, M. Paul Scott, in starch synthesis and seed development in rice, Plant Biotechnol. J. 17 (2019)
T.A. Hennen-Bierwagen, A.M. Myers, Functions of maize genes encoding pyruvate 1914–1927, https://doi.org/10.1111/pbi.13108.
phosphate dikinase in developing endosperm, Proc. Natl. Acad. Sci. U. S. A. 115 [64] Y. Li, C. Fan, Y. Xing, P. Yun, L. Luo, B. Yan, B. Peng, W. Xie, G. Wang, X. Li, J. Xiao,
(2018) E24–E33, https://doi.org/10.1073/pnas.1715668115. C. Xu, Y. He, Chalk5 encodes a vacuolar H + -translocating pyrophosphatase in-
[51] R. Narsai, K.A. Howell, A. Carroll, A. Ivanova, A.H. Millar, J. Whelan, Defining core fluencing grain chalkiness in rice, Nat. Genet. 46 (2014) 398–404, https://doi.org/
metabolic and transcriptomic responses to oxygen availability in rice embryos and 10.1038/ng.2923.
young seedlings, Plant Physiol. 151 (2009) 306–322, https://doi.org/10.1104/pp. [65] P.A. Peña, T. Quach, S. Sato, Z. Ge, N. Nersesian, I.M. Dweikat, M. Soundararajan,
109.142026. T. Clemente, Molecular and phenotypic characterization of transgenic wheat and
[52] A. Zabalza, J.T. Van Dongen, A. Froehlich, S.N. Oliver, B. Faix, K.J. Gupta, sorghum events expressing the barley alanine aminotransferase, Planta 246 (2017)
E. Schmälzlin, M. Igal, L. Orcaray, M. Royuela, P. Geigenberger, Regulation of re- 1097–1107, https://doi.org/10.1007/s00425-017-2753-1.
spiration and fermentation to control the plant internal oxygen concentration, Plant [66] C. Fan, G. Wang, Y. Wang, R. Zhang, Y. Wang, S. Feng, K. Luo, L. Peng, Sucrose
Physiol. 149 (2009) 1087–1098, https://doi.org/10.1104/pp.108.129288. synthase enhances hull size and grain weight by regulating cell division and starch
[53] H. Kikuchi, S. Hirose, S. Toki, K. Akama, F. Takaiwa, Molecular characterization of accumulation in transgenic rice, Int. J. Mol. Sci. 20 (2019), https://doi.org/10.
a gene for alanine aminotransferase from rice (Oryza sativa), Plant Mol. Biol. 39 3390/ijms20204971.
(1999) 149–159, https://doi.org/10.1023/A:1006156214716. [67] A.J. Oiestad, J.M. Martin, M.J. Giroux, Overexpression of ADP-glucose pyropho-
[54] J. Yang, S.-R. Kim, S.-K. Lee, H. Choi, J.-S. Jeon, G. An, Alanine aminotransferase 1 sphorylase in both leaf and seed tissue synergistically increase biomass and seed
(OsAlaAT1) plays an essential role in the regulation of starch storage in rice en- number in rice (Oryza sativa ssp. japonica), Funct. Plant Biol. 43 (2016) 1194–1204
dosperm, Plant Sci. 240 (2015) 79–89, https://doi.org/10.1016/j.plantsci.2015.07. https://doi.org/10.1071/FP16218.
027. [68] H. Kobayashi, T.M. Ikeda, K. Nagata, Spatial and temporal progress of programmed
[55] M. Zhong, X. Liu, F. Liu, Y. Ren, Y. Wang, J. Zhu, X. Teng, E. Duan, F. Wang, cell death in the developing starchy endosperm of rice, Planta 237 (2013)
H. Zhang, M. Wu, Y. Hao, X. Zhu, R. Jing, X. Guo, L. Jiang, Y. Wang, J. Wan, 1393–1400, https://doi.org/10.1007/s00425-013-1854-8.
FLOURY ENDOSPERM12 encoding alanine aminotransferase 1 regulates carbon and [69] T. Van Hautegem, A.J. Waters, J. Goodrich, M.K. Nowack, Only in dying, life:
nitrogen metabolism in rice, J. Plant Biol. 62 (2019) 61–73, https://doi.org/10. programmed cell death during plant development, Trends Plant Sci. 20 (2015)
1007/s12374-018-0288-z. 102–113, https://doi.org/10.1016/j.tplants.2014.10.003.
[56] V. Hadži‐TaškovićŠukalović, Activity and distribution of nitrogen‐metabolism

You might also like