Professional Documents
Culture Documents
PII: S0022-2860(14)00462-1
DOI: http://dx.doi.org/10.1016/j.molstruc.2014.05.003
Reference: MOLSTR 20602
Please cite this article as: H. Eshtiagh-Hosseini, S. Ali Beyramabadi, A. Morsali, M. Mirzaei, H. Chegini, M. Elahi,
M.A. Naseri, Synthesis, characterization and intramolecular proton transfer of 3,3’-Dihydroxy-4,4’-[5-methyl-1,3-
phenylenebis(nitrilomethylidyne)]-bis-phenol, Journal of Molecular Structure (2014), doi: http://dx.doi.org/
10.1016/j.molstruc.2014.05.003
This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers
we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and
review of the resulting proof before it is published in its final form. Please note that during the production process
errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.
Synthesis, characterization and intramolecular proton transfer of 3,3'-
Dihydroxy-4,4'-[5-methyl-1,3-phenylenebis(nitrilomethylidyne)]-bis-
phenol
a
Department of Chemistry, Ferdowsi University of Mashhad, Mashhad, Iran
b
Department of Chemistry, Mashhad branch, Islamic Azad University, Mashhad, Iran
c
Department of Chemistry, Faculty of Science, Birjand University, Birjand, Iran
1
Abstract
shifts were calculated by using density functional theory (DFT) method. In addition, the
Atoms in molecules (AIM) analysis was employed for investigation of its tautomerization.
Four possible tautomers of the investigated Schiff base were optimized in both of the gas and
solution phases. The Schiff base has no planar structure, but each of the benzene rings is in a
separate plane. In the most stable tutomer, the phenolic protons of the two –OH groups are
consistency between the theoretical and experimental results confirms validity of the
Keywords: Schiff Base; DFT; Assignment; Intramolecular Proton Transfer, AIM analysis,
Tautomerization.
2
1. Introduction
The Schiff bases and their metal complexes have a large number of applications especially in
enzymatic reactions [1–4]. The tetradentate ONNO donor Schiff bases form a main group of
Hydrogen bond systems are one of the key interactions that determine the structure,
understanding and comprehensive studies of the nature of hydrogen bonds is important for
In view of our interest in synthesis of new Schiff bases [7-14], herein we report synthesis,
In the structure of the titled compound, there are two OH…N intramolecular-hydrogen
bonds, competition of which has important role in stability of the tautomeric structures. A
major aim of this paper is to study hydrogen bonding in aminohydroxyaryl Schiff bases and
to theoretically describe the proton-transfer process and particular tautomeric forms, too.
2. Experimental
All of used chemicals were obtained from Merck Company and were used without any
further purification. Melting points were determined using an electrothermal 9100 melting
point apparatus. The IR spectra were obtained using a Buck 500 infrared spectrophotometer.
3
Elemental analysis (C, H, N) was performed on a Heraeus elemental analyzer CHN-O-
dihydroxybenzaldehyde in toluene (150 mL) was refluxed under vigorous stirring with a
Dean-Stark for 3 h. The resulting suspension was kept at room temperature prior to being
filtered, washed with ethanol (2×10 mL) and dried with diethyl ether (2×10 mL) to afford a
deep red solid. The solid was recrystallized for further purification. (Yield: 65%, m.p.> 250
3. Computational details
The DFT clculations have been performed using B3LYP functional [15] as implemented in
the Gaussian 03 program package [16]. The 6-311+G(d,p) basis set was used. Here, the
Polarizable-Continuum Model (PCM) [17] has been employed for investigation of solute-
solvent interactions. All geometries were fully optimized in both of the gas phase and
methanolic solution. The optimized geometries were used to calculate the vibrational
The 1H and 13
C NMR chemical shifts were predicted with respect to tetramethylsilane
(TMS), where the GIAO method was used [18]. Since the DFT-calculated vibrational-
frequencies are usually higher than the experimental ones, they were scaled using a factor of
0.9614 [19].
4
The AIM topological analysis was performed in accordance with Bader’s approach [20]
using AIMall package [21]. The DENSITY= CURRENT option was used to generate the
wavefunction files.
3.1. Tautomerism
There are four possible tautomers for the titled compound, geometries of which are fully
optimized in both of the gas phase and methanolic solution. Their PCM optimized structures
are shown in Fig. 1, which are named as La, Lb, Lc and Ld.
5
H8 La H3 O3 H4
H9 O4
C10 C9 C2 C3
O2 O1 C1 C4 H5
H10 C11 C8
H1 C6 C5
C12 C13 H2
H18 H6
H11 N1 C7
C14 N2
C20 H7
H12 C19 C15
C18 C16
H17 H13
C17 C21
H14
. H16 H15
6
Figure 1. The B3LYP optimized geometries of the La, Lb, Lc and Ld tautomers of the titled
Schiff base.
In continuation, the tautomerization of the titled Schiff base was investigated using the
PCM model. Otimized geometries of the transition states are shown in Fig. 2.
The La tautomer is more stable than the Lb, Lc and Ld tautomers by15.27, 30.58 and
29.66 kJ.mol-1 in the gas phase and 3.38, 5.90 and 10.95 kJ.mol-1, in the PCM model,
⎯⎯
→ Lb tautomerization involves the TSLa-Lb as the transition state.
respectively. The La ←⎯
⎯
occurring by activation energy (Ea) of 12.12 kJ.mol-1 in the gas phase, which reduces to 5.66
7
⎯⎯
→ Lc tautomerism is in competition with the La ←⎯
The La ←⎯
⎯ ⎯⎯
→ Lb one. The former
⎯
⎯⎯
→ Lc pathway is higher than the
involves the TSLa-Lc transition state. The Ea of the La ←⎯
⎯
⎯⎯
→ Lb one by 8.04 and 1.69 kJ.mol-1, in the gas phase and PCM model, respectively.
La ←⎯
⎯
⎯⎯
→ Lb and La ←⎯
Difference of the computed Eas for the La ←⎯
⎯ ⎯⎯
→ Lc pathways can be
⎯
In the Ld species, both of the H1 and H2 protons are bonded to the azomethine nitrogens.
⎯⎯
→ Ld and Lc ←⎯
The Lb ←⎯
⎯ ⎯⎯
→ Ld tautomerisms are passed through the TSLb-Ld and
⎯
TSLc-Ld, respectively, the Eas of which are 14.02 and 13.30 kJ.mol-1 in the gas phase, and
⎯⎯
→ Lb ←⎯
the both pathways: the La ←⎯
⎯ ⎯⎯
→ Ld or the La ←⎯
⎯ ⎯⎯
→ Lc ←⎯
⎯ ⎯⎯
→ Ld.
⎯
8
Figure 2. The B3LYP optimized geometries of the TSLa-Lb, TSLb-Ld, TSLa-Lc and TSLc-Ld.
9
3.2. Geometry optimization
The elemental analysis results for the titled Schiff base (Anal. Calcd. for C20H20N2O4: C,
70.39; H, 6.16; N, 7.14. Found: C, 67.68; H, 4.89; N, 8.28 %) confirm the proposed formula.
The titled Schiff base has four tautomers, the most stable of which is the OHOH form (La
tautomer). Optimized geometry of the La with labeling of its atoms is shown in Fig. 1.
structural parameters are in agreement with the data reported for the similar compounds [7-
14,22-28].
The calculated-bond lengths are in the expected range [29]. All of three benzene rings are
essentially planar, but each of them lies in a separate plane. The two side-benzene rings
make a dihedral angle of approximately 20° with each other. In the diamine-bridge region,
the middle-benzene ring has a dihedral angle of about 60° with the side benzene rings.
10
C2-H3 1.08 C7-N1-C15 120.9 C20-C15-C16-C21 176.2
O2-H2 1.00
N1-N2 4.80
O1-O2 7.76
N2-C19 1.41
C17-H16 1.09
C20-H18 1.08
11
The resorcinol OH groups are in the same plane with the aromatic rings (Table 1). The H1
and H2 atoms are engaged in intramolecular-hydrogen bonds with the azomethine nitrogens,
N1 and N2 atoms, respectively. The calculated N…H and N-O distances are 1.71 and 2.621
Å, respectively. These H-bond interactions decrease electron density of the O1-H1 and O2-
H2 bonds. So that the O1-H1 and O2-H2 bonds are longer than the O3-H4 and O4-H9 ones
by 3.2 pm.
The C7=N1 and C14=N2 bonds are in the same plane with the corresponding resorcinol.
Both of the C15-N1 and C19-N2 bond lengths are appropriate size for the C-N single bond,
while both of the C7-N1 and C14-N2 bonds are corresponding to the C=N double bond. As
expected, the methyl substitution is in the same plane with the benzene ring. The calculated
structural parameters are in agreement with the previously reported data for the similar
gathered in Table 2, where the atoms are numbered as in Fig. 1. Good agreement between
the calculated and experimental chemical shifts confirms suitability of the optimized
The H4 and H9 hydrogens are only exceptions, where the experimental chemical shifts
are significantly higher than the calculated ones. These atoms may be engaged in the
to the isolated molecule in the gas phase, while the experimental data are from DMSO
solutions. Obviously, the solvent molecules interact with the -OH protons.
A broad signal at 13.60-13.80 ppm is assiged to the H1 and H2 phenolic protons. Their
12
engagement in the intramolecular H-bond (O-H…N), shifts their signals upfield [7-14,30].
13
1 13
Table 2. Experimental and DFT computed H- and C-NMR chemical shifts of 3,3'-Dihydroxy-4,4'-[5-methyl-1,3-
phenylenebis(nitrilomethylidyne)]-bis-phenol in DMSO solution, δ [ppm].
1 13
H NMR C NMR
Atom Atom
Atom position Exp. Theo. Exp. Theo. Exp. Theo. Atom position Exp. Theo.
position position
H2 13.75 H3 6.81 C1 163.8 173.33 C16 131.8 130.92
13.60-13.80
H1 13.24 H8 6.69 C8 163.8 172.09 C20 129.8 125.02
6.30-6.50
H4 10.33 4.05 H5 5.98 C7 163.4 170.72 C13 119.1 119.27
H9 10.33 3.93 H10 5.83 C3 163.4 168.00 C6 112.4 117.87
H12 8.80 8.85 H14 2.30 2.37 C10 163.4 167.56 C15 110.6 115.58
H7 8.80 8.85 H13 2.30 2.22 C14 163.4 165.05 C4 108.2 107.66
H16 7.33 H15 2.30 1.93 C15 162.5 158.04 C11 108.2 107.66
H18 7.17 C19 162.5 154.70 C2 102.7 107.47
7.30-7.50
H6 7.06 C5 147.9 138.23 C9 102.7 107.38
H11 7.06 C12 147.4 138.23 C21 17.4 19.00
H17 6.91 C17 134.9 137.05
14
3.4. Vibrational spectroscopy
Nowadays, theoretical assignment of the spectra provides a quantitative framework for
Here, the vibrational modes of the La tautomer were analyzed by comparing the DFT and
A broad bond in the 3430-2600 cm-1 spectral region is attributed to overlapping of the O-
H and C-H stretching vibrations [7-14,34,35]. Deconvolution of this region is given in Table
3. The most intensive band is related to the stretching vibrations of the O1-H1 and O2-H2
bonds. Due to the engagement of the H1 and H2 in intramolecular-hydrogen bonds, the O1-
H1 and O2-H2 stretching vibrations have lower energies than the corresponding vibrations
The very intensive band in the 1660-1500 cm-1 region is related to the azomethine C=N
bonds. Also, the C-O stretching vibrations result in strong bands at 1223 cm-1 (Table 3) [7-
14,34,35].
Table 3. Selected experimental and calculated IR vibrational frequencies (cm-1) of the 3,3'-
Dihydroxy-4,4'-[5-methyl-1,3-phenylenebis(nitrilomethylidyne)]-bis-phenol.
15
1496 (s) 1481 υ(C-O)+υasym(C=C) benzene rings
1512 (s) 1524 υsym(C=C) bridging benzene ring
1597(vs) 1543-1584 υsym(C=C) benzene rings
1594 υ(C7=N1, C14=N2)
1630(vs)
1601 υ(C=N)+ υsym(C=C) benzene ring of resorcinol
2912 υsym(C-H) methyl
2929 υ(O2-H2, C14-H12)
2941 υ(O1-H1, C7-H7)
2950 υ(O2-H2, C14-H12)
3430-2600 (br)
2960,2987 υasym(C-H) methyl
3041-3067 υ(C-H) aromatic
3076 υ(C2-H3, C9-H8)
3661 υ(O3-H4, O4-H9)
Abbreviations: op, out-of-plane; ip, in-plane; m, medium; s, strong; vs, very strong; br, broad.
The electrostatic potentials, VS(r), of the La, Lb, Lc and Ld are shown in Fig. 3, with the
negative potential shown in red and the positive shown in blue. As shown in Fig. 3, there is a
region of positive VS(r) in the most external part of H2 (the region located at the
continuation of O2…H2) in all the structures, but the negative VS(r) is located at the
outermost part of N2. Negative potential around the N2 atom of the La is very prominent
that shows the occurrence of IPT between O2 and N2 [36]. The interaction between the
negative VS(r) region of N2 and the positive VS(r) region of H2 is one of the reasons for
16
Figure 3. Electrostatic potential map of the La, Lb, Lc, Ld and TsLa-Lb.
The Bader theory is a very applicable tool for analyzing hydrogen bonding. Analysis of
the properties of BCPs has often been used for the assessment of the nature of hydrogen
bonds [37-39]. The parameters derived from the Bader theory, as an example of the
Laplacian of the electron density , the electron energy density HC [the sum of the kinetic
electron energy density (GC) and the potential electron energy density (VC)], and -GC/VC,
indicate the type of interaction. For a negative value of a Laplacian, there is no doubt that
interaction or bond formation could be covalency. If and HC are positive, the interaction
is noncovalent. If is positive but HC is negative, and the -GC/VC is smaller than 1, then
The topological parameters, such as BCP, , GC, VC, and HC at the BCP of N…HO
17
bond are listed in Table 4. Also, the molecular graphs are shown in Fig. 4.
Table 4: Topological properties at the BCP of N…HO bond and NH…O in La, Lb, Lc, Ld,
TsLa-Lb, TsLa-Lc, TsLa-Ld, TsLb-Ld, TsLc-Ld.
The molecular graph shows the existence of a BCP between the H2 and N2 atoms, which
are linked by two bond paths. The topological structure indicates that the intramolecular
hydrogen bond existed in La. Table 4 shows that at the BCP of the hydrogen bond, the is
positive, while HC is negative, and the ratio of GC and VC, -GC/VC, is between 0.5 and 1;
all of the topological parameters showed that the intramolecular hydrogen bond, is partly
The BCP at the BCP increased, which means that the hydrogen bond was stronger than
that in La. Compared with the La tautomer, in the Lb and Lc ones, the absolute values of
, GC, VC, and HC increased, while –GC/VC decreased, which means that the covalent
18
3.7. AIM analysis on the RCP
The RCP is a point of minimum electron density within the ring surface and a maximum
on the ring line [42]. Table 5 gives the electron density RCP at the RCP and it’s of the
ring (H–O–C=C–C–N), which created by the hydrogen bond formation. The distance
between the RCP and the BCP of the hydrogen bond is also listed in Table 5.
The extended dRCP BCP also prophesied that the hydrogen bond becomes stronger in the Lb
tautomer. This as well means that the properties of RCP: RCP and could probably be
Table 5. The topological properties at the RCP, the distance between RCP and BCP in La,
Lb, Lc, Ld, TsLa-Lb, TsLa-Lc, TsLa-Ld.
19
20
Figure 4. The QTAIM molecular graph of the La, Lb, Lc, Ld, TsLa-Lb, TsLb-Ld, TsLa-
Lc, TsLc-Ld and TsLa-Ld (small green spheres, small red squares, and lines represent
BCP, RCP, and bond paths, respectively)
4. Conclusion
has been synthesized and characterized experimentally. The newly synthesized species was
investigated computationally by using the DFT methods. Geometries of the four possible
tautomers of the L were fully optimized in the gas phase and methanolic solution using the
PCM model. In both of the gas phase and PCM model, the La is the most stable tautomer of
the L.
In all tautomers, the L has no planar structure. The H1 and H2 phenolic protons are
engaged in the intramolecular hydrogen bond (_O-H…N), which affects considerably their
NMR chemical shifts and energy of their O-H stretching vibration in the IR spectra, too.
This intramolecular hydrogen bonds increase stability of the investigated Schiff base.
between two sites of the La, proton transferring between O2 and N2 could be occurred in
lower barrier energy than the O1 to N1 pathway, which is confirmed by the Electrostatic
21
potential maps of the structures and Topological parameters by AIMall package.
The computed parameters are in good agreement with the values reported for the similar
compounds. On the other hand, the DFT calculated IR frequencies and NMR chemical shifts
also confirm the experimental data, showing validity of the optimized geometries for the
investigated species.
Acknowledgement
References
[1] L.H. Abdel-Rahman, R.M. El-Khatib, L.A.E. Nassr, A.M. Abu-Dief, Synthesis,
physicochemical studies, embryos toxicity and DNA interaction of some new Iron(II) Schiff
[2] B. Meunier, Metalloporphyrins as versatile catalysts for oxidation reactions and oxidative
[3] D. Ostovic, T.C. Bruice, Mechanism of Alkene Epoxidation by Iron, Chromium and
[4] L. Canali, D.C. Sherrington, Utilisation of homogeneous and supported chiral metal
[5] P.G. Cozzi, Metal–Salen Schiff base complexes in catalysis: Practical aspects , Chem.
22
[7] H. Eshtiagh-Hosseini, M.R. Housaindokht, S.A. Beyramabadi, S. Beheshti, A.A.
(2012) 460-467.
experimental and theoretical characterization, Bull. Chem. Soc. Ethiop.27 (2013) 273-280.
Schiff-base and its Mn(II) complex: Synthesis, experimental and theoretical characterization,
23
J. Struct. Chem. Accepted for publication (2013).
[14] S.A. Beyramabadi, A. Morsali, S.H. Vahidi, M. Javan Khoshkholgh, A.A. Esmaeili,
formula into a functional of the electron density, Phys. Rev. B 37 (1988) 785-789.
[16] M.J. Frisch, et al. Gaussian 03, Revision B.03; Gaussian, Inc.: Pittsburgh PA, 2003.
[19] D.C. Young, Computational Chemistry: A Practical Guide for Applying Techniques to
[20] R.F.W. Bader, Atoms in Molecules: A Quantum Theory; Clarendon Press: Oxford, U.
K., 1994.
545-559.
[22] K. Srinivasan, P. Michaud, J.K. Kochi, Epoxidation of olefins with cationic (salen)
[24] D.-G. Huang, X.-F. Zhang, H.-P. Zhu, C.-N. Chen, Q.-T. Liu, Aqua(N,N'-
24
disalicylideneethylenediamino-N,N',O,O')(4,5-imidazoledicarboxylato-O)manganese(III)
m2618-m2620.
[27] Z.-H. Ni, H.-Z. Kou, L.-F. Zhang, Y.-B. Jiang and A.-L. Cui, A cyano-bridged trimeric
Oxidobenzylideneamino)cyclohexyl]imino}ethyl)phenolato-[kappa]^4O,N,N',O']copper(II),
[30] A. Pui, C. Policar, J.-P. Mahy, Electronic and steric effects in cobalt Schiff bases
[32] P. Leyton, C. Paipa, A. Berrios, A. Zárate, M.V. Castillo, S.A. Brandán, Structural
25
(phenylmethoxycarbonylamino) pentanoyl] amino] acetic acid by vibrational spectroscopy
[33] F.D. Proft, P. Geerlings, Conceptual and computational DFT in the study of aromaticity,
[34] J. Sanmartín, A.M. García-Deibe, M. Fondo, D. Navarro, M.R. Bermejo, Synthesis and
crystal structure of a mononuclear iron(III) (η2-acetato) complex of a β-cis folded salen type
[35] D.C. Ware, D.S. Mackie, P.J. Brothers, W.A. Denny, Synthesis and characterization of
(1995) 1641-1646.
(2012) 1233-1240.
[37] R.Bader, A.I. Molecules, A Quantum Theory. Clarendon: Oxford, UK, 1990.
[40] S. Jenkins, I. Morrison, The chemical character of the intermolecular bonds of seven
phases of ice as revealed by ab initio calculation of electron densities, Chem. Phys. Let., 317
(2000) 97-102.
[41] Y.H. Mariam, R.N. Musin, Transition from Moderate to Strong Hydrogen Bonds: Its
Identification and Physical Bases in the Case of O−H···O Intramolecular Hydrogen Bonds, J.
26
[42] M.T. Carroll, R.F. Bader, An Analysis of the Hydrogen Bond in BASE-HF Complexes
27
Graphical abstract
28
Highlights
A new ONNO tetradentate Schiff base has been synthesized and characterized
experimentally and theoretically, too.
Geometries of its tautomers were optimized.
Theoretical assignments of the IR and NMR spectra have been computed.
Its tautomerism was demonstrated by kinetical and AIM analysis.
29