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Quimica Spramolecular Chapter 8 M.J. Lehn Supramolecular Chemistry
Quimica Spramolecular Chapter 8 M.J. Lehn Supramolecular Chemistry
2 Supramulecular Photochemistry 93
ET
ME
Fig . 18 . Light-conversion photochemical
molecular device, consisting of two compo-
nents, a light collector (or antenna, light-
absorbing groups A) and a light emitter E . and
performing a three-step process : absorption
(A), energy transfer (ET), and emission (E) .
87 88
89a 89b
8 .2 Supramolecxlar Photochemistry 95
ET
<01-L 90
tion 6 .4 .3) . They represent molecular devices for substrate-selective optical signal
generation and for optical reading-out of recognition processes . Such photo-che-
mosensors make possible the development of sensitive analytical methods for the
detection of specific substrates [8 .42] .
Chromo- or lumino-ionophores of macrocyclic or macropolycyclic type res-
pond to the binding of metal ions [8 .34-8 .41] and may be of much interest as ana-
lytical tools, for instance, for environmental applications or for the study of ionic
changes in biological processes such as cell signalling [8 .41] . Receptors such as 91-93
combine the strong and selective complexing ability of cryptands with the intense
absorption or emission properties of photosensitive groups like azophenol
[8 .43-8 .45], spirobenzopyran [6 .65], anthracene [8 .37, 8 .46, 8.47] or coumarin [8 .48,
8 .49] . They display marked changes in absorption and fluorescence on complex-
ation of alkali-metal cations or protonation, thus acting as fluorescent signalling
systems (that may involve photoinduced electron transfer quenching [8 .39, 8 .40,
8 .46]), for instance in a very selective colourimetric assay of lithium in serum [8 .43b]
(see also [8 .50, 8 .51]) . Photoresponsive substances derived from other types of
receptors like spherands [8 .52] and calixarenes [8 .53], present related properties . I
X
N
eN (L0 \_
/ )) I
0
0 0l I
~ ~0 O~J
r-\
I
`N N
0 OJ
\_j
91 92
EXCITATION I by
y JMNl
D art; PS : ~,;:-~ A
;f! • ;
i
CHARGE SEPARATED STA-=
0
® H) _
/ i S\
(CHZ)
(Cµr)m C-H 11 tip
•,
®
94 a
lateral macrocycles, as shown in 95, results in quenching of the singlet excited state
of the Zn-porphyrin centre by an efficient intracornplcx electron transfer, from the
porphyrin to Ag(i), leading to charge separation and generating a porphyrinium
cation of long lifetime [8 .70a] .
(
0 O
0 .
O
o
, O
95
Long range thermal and PeT processes are of particular interest in both chemistry
and biology (see also Section 8 .3 .2) . Rigidly linked components allow the investi-
gation of the geometrical factors influencing electron transfer [8 .71a,b, A .10, A .20] .
Electron hopping occurs in polynuclear assemblies of metal complexes bound, for
instance, to a polymer support [8 .71c] . Specific PeT effects take place in restricted
reaction spaces, between groups on the surfaces of micelles, in dendrimers or bound
to the DNA double helix [7,83] .
Systems undergoing photoinduced electron-transfer processes represent compo-
nents for light-to-electron conversion devices . Of special interest is the design of
systems performing long-range electron transfer (see Section 8 .3 .2), in order, for
instance, to generate transmembrane photoelectric signals or to serve as the basis of
an electronic shift register memory at the molecular level [8 .72] .
affecting its rate or the nature of the products, and give rise to novel transforma-
tions.
The complexation of coordination compounds may make it possible to control
their photochemical behaviour via the structure of the supramolecular species form-
ed . For instance, the binding of cobalt(m) hexacyanide by macrocyclic polyam-
monium receptors markedly affects their. photoaquation -quantum yield in a struc-
ture-dependent manner [8 .73-8 .77] . It thus appears possible to orient the photo-
substitution reactions of transition-metal complexes by using appropriate receptor
molecules . Such effects may be general, applying to complex cations as well as to
complex anions [2 .114] .
The course of a number of other photoreactions could be altered or oriented by
selective binding . In particular, substances effecting single- or double-strand nucleic
acid recognition and fitted with a photoreactive group may perform sequence spe-
cific photocleavage [4 .56, 5 .29, 5 .30] .
The incorporation of photoactive compounds into organized supramolecular
assemblies allows the induction of specific reactions and structural changes such as,
for instance, in the photocrosslinking of photopolymerizable components in lipid
vesicles, a powerful approach to the control of polymolecular architectures [7 .10,
8 .78] .
96
C
Me2 N
® -k q
V
acceptor groups A
CN
N CN
A ® 0 NO2
CN
yields exceptionally large values for the longer ones [8 .88, 8 .89] and provides insight
into the dependence of quadratic and cubic hyperpolarizabilitics on chain length
and on substituents [8 .83, 8 .90, 8.91] .
The incorporation of such compounds into mixed Langmuir-Blodgett films built
from a fatty acid (see 97) [8 .92] or from an amphiphilic cyclodextrin [8 .93] produces
oriented arrangements presenting marked NLO features .
97
molecular charge transfer on excitation . It is possible to more or less finely tune their
polarization, polarizability, extent of charge transfer, absorption bands, etc ., by
many variations in basic structural types as well as in substituents .
It is clear that combining the design of NLO active molecules with the manipu-
lation of selective intermolecular interactions may produce novel NLO materials
that take into account supramolecular features .
104 8MolecuarndSpmolecuarDvis
8 .3 MolecuarndSpmolecuarEtniDevcs
Muchateniosbgvtheposiblyfdvepngchmialsyte
capbleofhndigctrsawyeminctoflrimpnets .Ven-
extnsivworkhabepfmdonlctraive lsuchaorgnimetls
(e .g ., condutigplymersandchgtfersal)[8 .104-8 .106)ormlecua
semicondutr[8 .107]thamyledovicsbanrg mteials [8 .108] .
Insuchblkompndsuralc eftsouringbewthspc
formingthealpyofcurseanimpt ole .
Ontheorad,psibltyhaenvisgdto elcrnidvs
thawouldperthvofemlcuandthspermolcu .Thisdefn
afield of molecuar and supramolec elctronis conerigthp sof
singlemocu,figmolecuarsitondfplymecuarhits
suchaLngmir-Blodetfs [7 .2, 7 .3, 7 .78, 7 .79, 8 .109-8 .112, A .43] withnad
betwnhiclrotansfepc[8 .113] may occur.Torealizsuch
devicsnol rateps .Itisfrnecaytoimg cpnetmolu
thamypose dirfatus,ynheiz adstuy proei .The
secondtpi roateinsuprmoleca hiturs,came-
branesothgizedsruct,anoivesgtwhr esulingt-
typose hrquidpoets .Thetirdspqu hecontif
basicuntohermpnts,iorde a tvirelymocuswithan
extrnalphysic g .Pursingthed ofmlcuaretni curyma
havemnyspi-ofalgthewy,inadotrsingvelqutosab he
handligofmecus .Itisprobalyemtu rodfineclaythrous
tohegal ;inde,thf o egalitsfmychngeudrtiflc
of progesmadlnivepth(foraiw of thercnaivsthefld
se[8 .114, 8 .115]).
Theposibltyfdgnevicsuhamolrectifs[8 .116], tran-
sitor,wcheandpotis benvagdsomftherquida-
turesapnicomudshaetlcompxsrD-PSAytemsha
leadtophinucargesption hlevftisoadmlecu ([8 .62] ;
seSction 8 .2 .3) .Theadvntofsiglcrnthaoceprsinvolg
asinglectro ganicmrostue[8 .17a]ledstohcnira of
molecuarntics[S .117b] .
Molecular devices operating on electrons are basic elements for converting molec-
ular recognition events into electronic signals . Redox properties may be affected by
binding in a structure-dependent manner. Such perturbations by complexation lead
to an electrochemical characterization of recognition . Electrochemical effects re-
sulting from receptor-substrate binding define a domain of supramolecular electro-
chemistry .
Redox responsive receptor molecules arc based on two types of component : sub-
strate binding sites and electroactive groups . A number of substances have been
studied in which the redox properties of groups such as metallocenes [6.50b,
8 .118-8 .121], quinones [6 .50a, 8 .122] or paraquat [8 .123] are modified on substrate
binding (see also Section 6.4 .1). Conversely, redox interconversion of these groups
allows the reversible switching between states of high and low affinity . The mutual
effects of redox changes and binding strength in a receptor-substrate pair thus may
make it possible to achieve electrocontrol of complexation and, conversely, to
modify redox properties by binding .
The electrochemical properties of redox-active substrates are also affected on
binding to a receptor molecule . This is the case for the complexation of metal
hcxacyanides by polyammonium macrocycles where the shift of the redox poten-
tial depends on the binding constants and the oxidation or reduction of the sub-
strates leads to pronounced changes in stability (see Chapter 3) [3 .21, 3 .22] .
As a consequence of these electrochemical effects, molecular receptors may be
used to convert the chemical information present in binding and recognition pro-
cesses into electronic signals [8 .124-8.127]. They allow the development of substrate
specific sensors, based on chemically sensitive thick or bilayer membranes [6 .6,
8.125], and semiconductor devices [8 .126, 8 .127] such as field effect transistors
(PET) . Conversely, one may envisage performing electrochemically controlled, se-
lective release of a given substrate from a material, for instance for drug delivery
[8 .128] . Ultramicroelectrodes [8 .129] represent means for addressing small scale
electrochemical changes .
Multinudear metal complexes possess a rich electrochemistry [8 .130a] and may
serve as electron reservoirs. Organic redox systems containing multiple electro-
phores effect electron storage and transfer [8 .130c] . Thus, dinuclear Cu(1) [4.7] and
Ni(n) [8 .131] complexes exchange two electrons in one step and four electrons in
two steps, respectively. Attachment of several redox groups such as ferrocene [8 .132,
8 .133], viologen [8 .134] or Ni(it) cyclam [8 .135] to a core provides electron reser-
voirs that may be capable of powering multielectron catalytic reactions . Polyoxy-
metallates also take up a number of electrons (up to 32) [8 .136] . Biological multi-
redox centres are found, for instance, in the electron transfer protein cytochrome c~
that contains four heme groups [8 .137], whose redox properties are affected by local
solvatron as in synthetic porphyries [8 .138] .
M'
e-
Fig. 21 . Transmembrane electron transfer processes : carrier mediated via a redox carrier
(left) or channel mediated via a molecular wire (right) . Both processes may be coupled to light
by introduction of photoactive groups in the carrier or in the wire .
Our first approach towards the design of molecular wires was based on the caro-
viologens (CV 2 +), long, conjugated polyolefinic chains bearing pyridinium groups
at each end, which combine the structural features of carotenoids with the redox
properties of methylviologen . Such compounds (e .g.; 98) were synthesized and
shown to be incorporated in a transmembrane fashion into bilayer vesicles [8 .140],
as is also the case for other carotenoids bearing terminal hydrophylic groups [8 .141] .
The orientation of caroviologens in model lipid membranes was studied by linear
dichroism measurements . Dichroic ratios were determined on caroviologens of dif-
ferent lengths solubilized in lyotropic lamellar phases of different thicknesses and
macroscopically aligned between quartz plates . The orientation parameters obtain-
ed indicated transmembrane arrangement for caroviologens of length compatible
with the bilayer thickness of the membrane [8 .142] .
98
99
I H \ ~N 1 H \ ~N ~N I H ~ N N H N
I N N I N N` ` ` 1 ~N N` N
N 1 0 N N N N-
H r N_ N N
Bu' Bu'Bu' 0 - Bu t Bu' ® - 0 But Bu' Bu'
if * * P 0
Bu' But out Bu' Bu' Out But But
100
Thus, the caroviologen approach does produce functional molecular wires that
effect electron conduction in a supramolecular-scale system . Incorporation into
black lipid bilayer membranes (BLM) should allow further investigations of the
electron-transfer properties of these caroviologens and positive preliminary results
have been obtained [8 .145a] . A theoretical investigation of electron conduction in
molecular wires has been made [8 .145b] .
Other promising approaches to molecular wires involve linear conjugated arrays
of porphyrins (e .g ., 100) [8 .146], a bis-flavin amphiphile [8 .147], oligothiophenes
[8 .148, 8 .149] and long, rigid aromatic molecules (e .g., 101) [8 .150] that form persis-
tent reduced species [8 .151a] and oriented Langmuir-Blodgett films [8 .151b] .
Tetrathiafulvalenes, basic components of "organic metals", have been used as build-
ing-blocks of supramolecular entities [8 .152] . One may note that species based on
• 0 M 0 M 0 0 k N 0
.3F
®
• +.+.+•r 00
N ® N
0
*0*00
A, 0 u 0
®
00
N ®.,®i N 4
Ceieh
u 0 Ar 0
101
J 11 _ .
102
103
104
105
M93Sl SIMe3
S S S S S
Me3Si / \ \ / 1 / `3
n-B n-Bu n-B u n-Bu
106
relaying between groups in substances containing many redox centres [8 .160] may
be used for electrically "wiring" enzyme redox centres to electrodes [8 .161] . Min-
iaturization [8 .129] and surface functionalization of electrodes [8 .162] with suit-
ably selected molecular units provide ways towards the electrical addressing of
devices.
Electron transfer processes play a major role in biology and their mechanisms
have been very actively investigated in order to gain information about the struc-
tural factors affecting transfer rates and directionality [8 .163] . A series of appro-
priately derivatized cytochrome c protein molecules revealed that electron transfer
rates correlate with the length of tunnelling pathways comprising covalent bonds
and hydrogen bonds as well as through-space jumps [8 .164] . The DNA double helix
may serve as support for photoactive electron donor and acceptor groups [7 .83b] .
Such results also provide information of great value for the design of artificial elec-
tronic wires for oriented electron transfer over long distances in molecular and
supramolecular systems . It depends on a number of features for which optimization
conditions have been analysed to achieve ultrafast and highly efficient processes
[8 .165, 8 .166] .
Future developments in the design of molecular wires may concern three main fea-
tures : (1) modifying the conduction component, replacing the polyolefinic structure
by units such as connected or condensed oligothiophenes, oligopyrroles, aromatic
groups or metal coordination centres, for instance (see Section 8 .3 .2); (2) varying the
redox active end groups, which may also serve to anchor the device to a surface or into
a membrane ; (3) arranging the wire units into organized arrays orcircuits through link-
ing to a structural framework or by self-assembly based on recognition processes
[8 .167] .
Attaching metal centres (such as ferrocene groups, pyridine or 2,2'-bipyridine
complexes) at the end of a polyconjugated chain would provide molecular wires
combining the rich electrochemical and photochemical activities of metal complexes
with the long-range conjugation properties of the chain, thus leading towards
systems capable of performing electro- or photoinduced long range electron trans-
fer (LReT). Coupling molecular wires with photoactive groups is expected to yield
photoresponsive electron channels . Species of the D-PS-A type (see Section 8 .2 .3)
Fe
Fe
.WW
107
Rti (bpy)2
108
H37C\8
N
I
H37C18
Fe
CN
s2L7~\
NC
109
sensitive switches at the end of or inside the conjugated chain, represent switchable
molecular wires (see Section 8 .5 .2) responding to external stimuli .
The numerous receptor, reagent, and carrier molecules capable of handling inor-
ganic and organic ions are potential components of molecular and supramolecular
ionic devices that would function via highly selective recognition, reaction, and
transport processes with coupling to external factors and regulation . Such compo-
nents and the devices that they may build up form the basis of a field of molecular
Tonics, the field of systems operating with positively or negatively charged ionic spe-
cies as support for signal and information storage, processing, and transfer. In view
of the size and mass of ions, ionic devices may be expected to perform more slowly
than electronic devices. However, ions have a very high information content by
virtue of their multiple molecular (charge, size, shape, structure) and supramolec-
ular (binding geometry, strength and selectivity) features .
Molecular ionics offers a promising field of research that may already draw from
a vast amount of knowledge and data on ion binding and transport by natural and
synthetic receptors and carriers . The molecular recognition events involved may be
directly related to information and signal processing by ions, as is the case in biol-
ogy [8 .180, 8 .181] . Indeed, biological signals and communication events are based
on ionic and molecular species (sodium, potassium, calcium, chloride, acetylcholine
ole ul r nd upr mole ul r evi es
ions et hile the interest of omponents oper ting with photons nd ele trons
is well re ognized one m y m ke spe i l se for the development of mole ul r
toni s s ounterp rt to mole ul r photoni s nd ele troni s nd wide open
pl yground for the design of ion or mole ule sed devi es
ele tive ion re eptors represent si units for ioni tr nsmitters or dete tors
sele tive ion rriers orrespond to ioni tr nsdu ers hese units m y e fitted with
triggers nd swit hes sensitive to extern l physi l light ele tri ity he t pressure
or hemi l other inding spe ies regul ting sites stimuli for onne tion nd
tiv tion
inding tr nsport nd triggering m y e performed y sep r te spe ies e h
h ving spe ifi fun tion s in multiple rrier tr nsport systems see e tion
his llows v riety of om in tions etween photo or ele tro tive omponents
nd different re eptors or rriers ight nd redox sensitive groups in orpor ted
into re eptors nd rriers ffe t inding nd tr nsport properties
ore eptors nd o rriers provide me ns for regul tion vi of tors
o ound spe ies th t modul te the inter tion with the su str te hus simple
ioniz le group su h s r oxyli id fun tion represents proton swit h nd
le ds to proton g ted re eptors nd rriers responding to p h nges s seen for
inst n e in the regul tion of tr nsport sele tivity y see lso e tion
n lyti l methods sed on opti l or ele tri l effe ts indu ed y ion inding nd
tr nsport h ve een developed see e tions nd
on tr nsfer t kes pl e through mo ile rriers or ion h nnels see h p
ter ig rot ting shuttle pro ess m y lso e onsidered rtifi i l tr ns
mem r ne h nnels h ve een mu h less explored th n rriers pro ly e use
of the inherently l rger mole ul r stru tures involved despite the f t th t iol
ogi l tr nsport is thought to o ur m inly vi h nnel type spe ies
rious routes to the design of ion h nnels nd ion responsive mem r ne systems
h ve een investig ted some of them h ve lre dy een mentioned ove e tion
ne m y im gine v riety of ion h nnel types depending on the n ture of
the ion inding sites on the w y in whi h they re rr nged on the mole ul r
type nd on the over ll stru tur l fe tures ome re represented s hem ti lly in
igure
ppro hes to rtifi i l ion h nnels h ve for inst n e m de use of m ro y li
units see lso elow of peptide nd y li peptide
omponents of non peptidi polymers nd of v rious mphiphili mole
ules he properties of su h mole ules in orpor ted in il yer
mem r nes m y e studied y te hniques su h s ion ondu t n e p t h
l mp or me surements owever the n ture of the
superstru ture formed nd the me h nism of ion p ss ge rrier h nnel pore
defe t r diffi ult to determine nd often rem in m tter of onje ture
n ddition to ttempts t onstru ting ion h nnels on the sis of multi on
ne ted polyether m ro y les we h ve investig ted m inly two ppro hes
Fig. 23 . Schematic representation of different possible types of ion channel structures (from
left to right) : stack, string, rack, pipe of macrocycles, helical strand, two half-channel units,
self-aggregated and macrocycle core bearing bundles of chains .
towards the design of molecular structures that may function as ion channels and
lead to ion-responsive membrane systems : tubular mesophases and "bouquet mo-
lecules" . Self-assembling structures will be considered below (Section 9 .4) .
8 .4 .1 Tubular Mesophases
A stack of macrocyclic rings defines a molecular tube through which ions might
flow, as illustrated by a solid-state model of such an ion channel [6 .71] . Since in dis-
cotic liquid crystals, the spontaneous axial stacking of molecular discs gives colum-
nar mesophases, it appeared that if such phases could be obtained with ring elements
displaying an internal void, their arrangement in an axial stack would yield a hollow
column, that is, a molecular tube 110 . Macrocyclic polyamines bearing suitable side
chains, such as 111 and 112, indeed give tubular mesophascs that contain stacks of
macrocycles [8 .194, 8 .195] . Photocyclization of cinnamoyl derivatives of 111 yields
covalently linked columnar aggregates [8 .195] . Although the macrocyclic elements
used at present are not well suited for ion binding, further elaboration could lead to
ion channels that would be phase (temperature) dependent and could therefore also
present non-linear ion transfer behaviour .
Channel-like architectures are formed in the mesophase given by complexes of
long chain crown ether derivatives [8 .196a,b] and long-chain calixarene derivatives
display columnar liquid-crystalline arrangements [8 .196c] . Self-assembled tubular
structures based on cyclic peptide components have been described [8 .186] .
~N 7
N N
~` R _N ~~R
N CR
(N N)
% OF R/N
R [ L R
LN N-)
f>~f~
R V__/(\~ \ R
R
cc~ o
~N /-\ N--)
r N-CC
`N NJ
OC ~~ NCO
oc co
N--,
~
CN N-C
O p
-\,N N**
~6..J
Oc `Co a
Fig . 24 . Schematic representation of the arrangement of macrocvcle III in a compressed film at the air-waterinterf ace ; the aliphatic chains
are represented in thcir fully extended form, but some curling may occur .
O O
O O
db O O
113
RO ' _
O Oy OR RO O
0~ OR
(~ 0
O
0_ 'o of
~o
0 NHJt, HN O
O~ .NN f NNvO TN/ 'N~
N N O
0'# 1 0 0
0 NH
H N„ 0 0
0
O ,
HN~"O V^'O-^/ O :L NH
0 ® 10 0 0 0
MeO 0
OI 10
OI ZO
~6
O~OR RO~001OR
AO" '0
in an extended state may be estimated to lie in the 45-50 A range) ; (3) the terminal
carboxylate groups allow for anchorage at water-membrane interfaces and trans-
membrane orientation, as well as for eventual coupling to proton gradients .
When incorporated into the phospholipid membrane of liposomes, compounds
114 and 115 increased the permeability to Na -- and Lit ions, and ion transfer pro-
ceeded by a cation-cation antiport mechanism (Figure 25) [8 .208] .
Variations in the bouquet molecule including changing from poly(oxyethylene)
to polymethylene chains and changing from a crown ether annulus to a cyclodex-
trin (CD) annulus did not have strong effects on ion-transport activities . A carrier
mechanism could be excluded for the compounds studied since ion-transport
activity was undiminished in membranes in the gel state [8.208] . However, the
results gave no firm indication about the exact mechanism of the process, whether
it involved passage through the interior of the molecules or occurred through a pore
induced by aggregation of several molecules, as is the case for the pore-forming
polyene antibiotics (e .g., amphotericin, candicidin, nystatin, etc .) [8 .209] . Models of
the latter have been investigated as channel forming structures [8 .210] .
120 8 Molecular and Supramolecular Devices
The "bouquet"-type compounds 114 and 115 and related molecules thus form
functional ion transfer entities . Further studies are required to ascertain the mecha-
nism of transport and the effects of parameters such as membrane composition,
nature of alkali metal ions and concentration of bouquet molecules on the transport
rate in order to better describe the mode of action of these compounds . Ion trans-
port by "bouquet"-type molecules related to 114 and bearing lateral macrocyclic
units has been investigated [8 .188] .
A very large molecule such as 115 bearing seven chains on each side of the rigid
/3-CD core of about 6 A diameter and 400 A3 internal volume is of interest in itself
[8 .206] . By its size, its internal space, and its chains, it represents a sort of molecular
vesicle formed not by self-assembled amphiphilic chains but by chains covalently
grafted on a central core . Because it is dissymmetric, this /3-CD chundle could act
as an oriented transmembrane device . Its transfer selectivities might have analogies
with those of the channel of the acetylcholine receptor . Physical, chemical, mem-
brane-incorporation, and substrate-transfer properties of this and other /3-CD deri-
vatives will provide basic information about the handling and the behaviour of large
functional molecular species . Whatever the efficiency of the present or other
chundle molecules as ion channels, they nevertheless allow the testing of approaches
to channel design and to the handling of selective ionic conduction .
Incorporation of molecular ionic devices into supporting structures (such as
membranes, layers, and films) allows the exploration of their functional properties
and of their ability to produce ionic signals . Regulation of flow, switching, and
coupling to other components will require further structural modifications . Co-
operative effects and regulation of ion binding may be produced with ligands con-
taining two or more sites for the same or different substrates [8 .182, 8 .211, 8 .212],
whereas photoresponsive ligands provide switching capacity (see Section 8.5) .
The proton, being the smallest ion and the elementary particle counterpart of the
electron, deserves special attention . The designed handling of protons defines afield
of molecular protonics, whose development and features may parallel those of mo-
lecular electronics, Despite the much higher mass of the proton compared with that
of the electron, the rates of proton transfer can be very fast especially if tunnelling
processes are involved . On the other hand, the extremely wide range of proton
transfer rates may be considered an asset for the design of protonic devices . Molec-
ular protonics thus represents a particularly interesting special case of molecular
ionics . Proton transfer and gradients are of basic importance in bioenergetics, where
they drive transport processes and ATP synthesis, and in the chemiosmotic scheme
[8 .213] .
Numerous processes may be linked to proton transfer and protonation/depro-
tonation reactions (for general descriptions of proton transfer see, for instance,
[8 .214-8 .217]) . Proton-triggered yes/no or +/- switching is contained in the ability
of polyamine receptors and carriers to bind and transport cations when unproton-
ated and anions when protonated ; also, zwitterions such as amino acids may change
from bound to unbound or vice versa, when they undergo charge inversion as a
function of pH .
Linear arrays of protonatable or hydrogen bonded sites may allow the directed
long range transfer of protons, thus functioning as proton-conducting channel, i.e .,
as proton wire . Relevant systems would be linear polyamines or polyphenolic con-
densed aromatic units [8 .218], self-assembled hydrogen bonded heterocyclic rib-
bons such as 116 (see Section 9 .4 .4) or polyelectrolyte membranes [8 .219] in which
collective proton motion may take place and lead to proton conductivity .
116
use of proton transfer processes for instance, in porphyrins and hydrogen bonded
dye structures [8.96-8 .99, 8.223] . Proton transfer mediates charge transfer [8 .224]
and phase change [8 .225] in H-bonded solid molecular materials .
Photoinduced proton transfer may be generated through the large variation in
acidity or basicity of functional groups in the excited states of specific structures
[8.226] and lead to photoinduced pH jumps [8.227, 8 .228] . Changes of optical prop-
erties by tautomerisation in the excited state [8.229] occur, for instance, in the fluo-
rescent states of bipyridyl diols [8.230a] and form the basis of a proton transfer laser
process [8.230b] .
Of much significance is the realization of long-lived photogenerated tautomeric
states and long-range proton transfer (LRpT) processes . The latter could lead to
proton transfer charge separated states to be put in parallel with the extensively
studied charge separation by photoinduced electron transfer (see Section 8 .2 .3) . A
number of systems present photochromism on the basis of photoinduced proton
transfer [8 .229] .
In photosynthesis, light absorption results in charge separation by photoinduced
electron transfer . Realizing a proton-based analogue would be of much interest . The
first requirement is to devise systems presenting long-lived photoinduced tautomer-
ic states, compared with the very short lifetimes of the acid-base features of excited
states (for instance, in 2-naphthol) [8.226] . Significant progress towards such a goal
has been achieved by means of derivatives of the photochromotropic dinitrobenz-
yl-pyridine 117, which turns deep blue in the solid state on exposure to light and
reverts slowly to the colourless form in the dark [8 .231, 8 .232] . This colour change
results from a photoinduced proton transfer generating the tautomeric form 118 .
Irradiation of the phenanthroline analogue 119 has been found to give a tautomer
N02
NO2
N
H
0 NO2
® NO2
02N
119
If the operation of the devices considered above on their specific substrate (photon,
electron, ion) is triggered by external optical, electrical or chemical stimuli, their fea-
tures may be switched between two (or more) states presenting different character-
istics. Such switching devices are therefore formed by two main components : a
trigger, the switching unit, activated by an external stimulus and a substrate, the
switched species ; they should operate with efficiency, reversibility and resistance to
fatigue .
The substrate carries information defined by its molecular recognition features
and constitutes a signal that may be modulated by the switching process . The stim-
ulus to which the switch responds and the substrate on which it operates may both
be either of photonic, electronic, ionic, magnetic, thermal or mechanical nature .
Thus, a whole set of switches based on (substrate-stimulus) pairs, is defined by the
combination of the various types : opto-photo, opto-electro, electro-photo, etc .
It is clear that the design of switched devices is intimately linked to the chemistry
of signal generation, processing, transfer, conversion and detection, i.e., to semio-
chemistry . The device is the effector generating a signal, the semiogen, and the sub-
strate is the carrier of the signal, the semiopbore (see Section 8 .1).
Switching also implies molecular and supramolecular bistability since it resides in
the reversible interconversion of a molecular species or supramolecular system be-
tween two thermally stable states by sweeping a given external stimulus or field .
Bistability in isolated molecules or supermolecules is, for instance, found in optical
systems such as photochromic [8 .229] or thermochromic substances or devices, in
electron transfer or magnetic processes [8 .239], in the internal transfer of a bound
substrate between the two binding sites of a ditopic receptor (see Section 4 .1 ; see
also Fig . 33) [6.77] . Bistability of polymolecular systems is of a supramolecular
nature as in a phase transition or a spin transition, both of which involve an assem-
bly of interacting species .
Multistability is present in systems that are interconvertible between more than
two states such as polynuclear--multivalence metal complexes or polytopic recep-
tors where one or more substrates may occupy and transfer between several differ-
ent binding sites.
Molecular hysteresis results when the interconversion between the states does not
follow the same pathway on sweeping the external stimulus or field in one or the
opposite directions [8 .240a, 8 .241] . A hysteresis loop has, for instance, been de-
scribed for the electrochemical interconversion of redox states in a dinuclear metal
complex; it involves the switching between two different binding sites [8 .240b] . Spin
transition systems are of interest with respect to information storage and processing
[8 .24lb] ; a spin transition in a polymeric iron complex presents a thermal hysteresis
at room temperature [8 .241c] .
A hysteresis loop can formally be drawn for the interconversion of a photo-
chromic substance between two states A and B characterized by two well separated
absorption bands as shown in Figure 26 ; sweeping the frequency up from v„ to VA
converts the system from state A to B when v,, reaches the absorption band of A ;
the system remains in state B if v A goes back to v,,; sweeping v o to vB converts the
system from state B to A, where it remains when v goes back to tio . Such state inter-
conversion curves are also characterized by the non-linearity of the response with
respect to scanning the triggering stimulus .
Signal conversion may be brought about when a device responds to a given stimu-
lus by generating a signal of another nature . Specific cases have already been men-
tioned above (Sections 8 .2 .3 and 8 .2 .4) . Substrate binding to a suitable receptor pos-
sessing a photoactive, a redox active, a proton exchanging site or a binding site for an-
other substrate may lead to modifications of the electrochemical, acid-base or bind-
ing properties, inducing the generation of a signal based on the release or the uptake
of a photon, an electron, a proton, an ion or a molecule, respectively (Figure 27) .
Logic devices may be designed on the basis of functional receptors that respond
differently to different substrates . A ditopic receptor responding differently when
either or both of two different substrates are bound represents an "AND" gate .
When the response is the same for two different substrates an "OR" function
results . When the binding is of sequential or cascade type (see Chapter 4), the bind-
ing of a second substrate requiring the prior binding of a first, an IF operation is
obtained, which also implies a regulation capability . The input-output may be opti-
cal, electronic or ionic . When the input is ionic (metal ions or molecular substrates)
and the output optical, photoionic logic devices are obtained . This is the case for
receptors responding to substrate binding by a change in light absorption or emis-
MOLECULAR
SIGNAL CONVERSION
SUPRA MOLECULAR
Modification Signal
Red - Ox
electron
Complexation ion
molecule
sion properties, like a change in fluorescence (see Section 8 .2 .2) as in the AND gate
based on the simultaneous binding of protons and sodium ions [8 .242] (see also
[8 .112e]) .
Transfer by transduction and reading of information and signals across a barrier
such as a membrane could beperformed following the principle illustrated in Figure2 8 .
A few transmembrane molecular rods having different lengths and terminal
shapes and moving freely by lateral diffusion may bind to a given receptor-trans-
mitter on one side (left) of the membrane in a configuration in the membrane plane
and in a displacement perpendicular to the membrane that will depend on the dis-
position and depth of the binding sites on the transmitter . This will impose on the
other side of the membrane a given topography for the set of rods that can be read
out selectively by binding of the complementary receptor-receiver . Such three
dimensional information transfer and reading should be highly efficient, selective
and economical . Indeed with only a few molecular rods an extremely large amount
of information may be expressed since the set of rods can adopt a very high num-
ber of topographies defined by in-plane configurations and out-of-plane displace-
ments . If, in addition, kinetic effects of association and dissociation rates come into
play, a 4D process results . The rods could be bolamphiphile molecules of different
shapes and nature .
The time modulation of transmitter signals, through pulsations of different dura-
tions and shapes may lead to frequency and amplitude coding of signalling events,
the detection requiring molecular receivers suitably tuned to frequency patterns and
thresholds . Such processes occur in intercellular communication by cell to cell sig-
nalling [8 .243].
Signal amplification is expected to take place when the triggering stimulus yields a
non-linear response as a function of the intensity (concentration) of the stimulus (sti-
mulating species) . This holds in systems displaying cooperativity and self -organiza-
tion, as in a phase change, for example . The chiral twisting of a mesomorphic phase to
become cholesteric on addition of a small amount of chiral component is such a case .
Stimulus induced perturbation of organized sup ramolec ular assemblies, such as opti-
cal switching of membrane self-assembly (see Section 8 .5 .5) or recognition-induced
formation of liquid crystalline polymers (see Section 9.4 .2), may be considered as an
amplification of a microscopic signal to the macroscopic scale . Positive cooperativity
is found in a polytopic ligand undergoing aggregation on ion binding [8 .2011 . Further
discussion of this and related questions will be given in Chapter 9.
Most switching devices studied make use of light for interconverting a molecule be-
tween two different states . Both forward and backward processes may be photo-
induced or one of them, usually the reverse transformation, may be thermal .
Opto-photoswitching occurs in bistable photochromic substances [8 .229] that are
converted into a coloured form on irradiation and revert to the initial colourless or
less coloured state either thermally or on irradiation with light of another frequency .
Such substances and the materials they may form, for instance by combination with
polymeric matrices, are of great interest for optical data storage, in particular of
reversible nature [8 .244, 8 .245] . They should display (1) high quantum yields for
both forward and reverse processes; (2) well separated absorption bands in the two
states ; (3) high thermal stability ; (4) low fatigue on multiple cycling ; (5) read-out
capability without erasing; (6) rapid response ; (7) sensitivity to wavelengths of com-
monly used light sources such as red diode and green YAG lasers .
"OFF' "OFF'
All 01
..ON . 'ON'
Ga
Fig. 29 . Optical switching of electronic conduction (left) and non-linear optical properties
(right) respectively in redox and push-pull polyenc molecular wires ; $ is the hyperpolariza-
bility.
FF FF
F F 365 rim F • F
> 600 n m l l
I~ S S S ;S 1
~N I ~N~ iN N~,
(open) (closed)
120a 120b
FF FF
F F 365 nm F F
F * F _ F • F
N > 600 nm ® S l , CN
S S S CN S S -' CN
S
(open) (closed)
121a 121h
FF FF
UV 312 nm
F * F (>96% conv .) F • F
® s s VIS >600 nm l S
o
S
l
HO OH HO OH
BIS-OH BIS-OH
(open) (closed) 122b
122a
electrochemically
inert E112 = - 180 mV
(-1 to +1 V range) (vs. SCE)
FF
I ~
VIS >600 nm F F
photochemically
inert
O S s •
le .- 100
BIS-Oq
123
-e,+e
0 OH
O N I OH
a
(bpy2)Ru
2 PF6
2 PF6
124 125
132 8 Molecular and Supramolecular Devices
between the luminescent hydroquinone 125 and the quinone 124 in which the lumi-
nescence is quenched by very fast electron transfer from the metal centre to the
organic acceptor unit .
The quinone-hydroquinone redox couple built into complexes 124 and 125 ful-
fils the requirements for the design of a bistable electro-photoswitch : both the oxi-
dized and reduced forms are isolable and stable ; the reduced form 125 is lumines-
cent, whereas the oxidized form 124 is quenched ; the electrochemical interconver-
sion of the two species is reversible [8 .256] .
Of much interest are the electroluminescence properties of conjugated polymers
that allow the development of electrically switched light-emitting devices [8 .257] .
Electric field activated bistable molecules are expected to switch at a critical field
strength [8 .258] .
Electroswitching of structure takes place when a redox change induces a revers-
ible structural or conformational process in a molecule, such as an electrochemically
activated intramolecular rearrangement [8 .259] . On the supramolecular level it con-
sists of the electroinduced interconversion between two states of different super-
structure . A case in point is the reversible interconversion of a double-helical
dinuclear Cu(t) complex M 2L 2 2 [8 .260] and of a mononuclear Cu(II) complex ML 2 +
in a sequential electrochemical-chemical process [8 .261] :
-2v
M 2 L, 2 + 2ML 2 + ( M = Cu ; L = quaterpyridine)
+2e
This process represents an elect roswitch 1 ng between a double helix and a single-
strand complex with interconversion of the ligand between a rather compact strand
state and a more extende double helical one (Figure 31) . It displays a sort of breath-
ing of the ligand and thus also constitutes a prototype for an electroswitched me-
chanical change (see Section 8 .5 .5) .
Electroswitching of molecular aggregate formation and disruption takes place on
interconversion of a lipid bearing a redox headgroup between a neutral and a
charged state, as for instance in hydrophobic ferrocene-ferricinium derivatives
[8.262, 8 .263] .
+ 2s
FF FF
UV 312 nm
F F (>98% cony .) F • F
® s
1% 1 `
s
VIS >600 nm 10,
$ s
Ho HO ON
BIS-OH °H BIS-OH
(open) (closed) 122b
122a
electrochemically
inert E112 =-180mV
(vs . SCE)
(-1 to +1 V range)
FF
F * F
~~ VIS >600 nm
photochemically ~- -
inert
0
BIS-Oq
123
n+
126
In principle, any cation cryptate (see Section 2.3) can be treated in this way, thus
allowing the initation of ion transport and cellular ion regulation processes by a light
pulse [8.48b, 8 .270, 8 .271] . The same type of approach can be applied to anions and
molecular substrates by incorporating the photocleaving unit into the correspond-
ing receptor molecule (macrobicyclic polyamine for anions [8 .272], cyclophane
receptor for hydrophobic molecules, for instance) . Photosensitive protecting
groups allow the photogencration of a free species like ATP, nucleotides, etc.
n+
02N
KS
ON
300-360nm
0=
0 OH
r7 +
N
<~0 / >
0-,
[8 .273] . Such photorelease of various substrates is of much interest for the study of
both semiochemical processes and biological regulation and communication .
Photoprotonic signals can be generated by light induced proton release, this might
happen for the quaternary N-R+ derivatives of 117, for instance [8 .233] . The pho-
toproduction of proton gradients across membranes could serve as a light-powered
proton pump for inducing vectorial processes such as the transport of protons
[8 .233, 8.234] or H+-ATPase model reactions [8 .274] .
Ion switches may be based on ionic jumps inside polytopic ligands between
different sites presenting different optical or electrochemical properties . Iono-
electroswitching, for instance, is produced by redox interconversion of a given
cation between two different sites providing suitable binding for two different oxi-
dation states in a ditopic receptor . This could occur in heteroditopic receptors, such
as that in 47 or a macrotricycle of type 46 with two different rings (N 2S2 and N20 3,
for example) (see Figure 33) . Such a complex should possess different optical prop-
erties in each site so that electroswitching would interconvert two species in which
the different locations of the ion would correspond to different optical signals .
Redox triggered iron translocation takes place in triple-stranded helical complexes
[8 .275] .
I+ 2+
N
NF S
-e
.e
~N NJ
~. uJ
Fig. 33. A potential iono- or mechano-electroswitch based on a heterotopic macrotricyclic
ligand ; the electrochemical interconversion of a copper ion could switch the location of the
ion from the [12]-N2S2 ring in the Cu(i) state (left) to the [151-N203 subunit in the Cu(i1)
state (right).
processing .
127
There is clearly a vast domain of investigation into the design and properties of
molecular and supramolecular devices as basis for the development of chemical
information processing and signalling as well as for the exploration of their rela-
tionships with related biological phenomena . One may envisage connecting arti-
ficial devices and biological entities, such as field effect transistors and neural cells
[8 .296], as well as the use of biological molecules for the engineering of devices, as
in chip construction by DNA technology [8 .297] .
A highly relevant question is whether the goal should be to operate at the level of
the single component or not . In order to minimize the risk of device failure the incor-
poration of some redundancy or repair procedures appears unavoidable, as in biolog-
ical processes, so that it will be necessary to develop suitable addressing and detection
procedures, error-checking and self-healing mechanisms for multidevice arrays .
Methods for analysing the response of complex multicomponent-multifunction-
al systems will be needed . Global responses may be submitted to deconvolution
procedures and multicomponent analysis [8 .298], making use for instance of pattern
recognition [8 .238, 8 .299], neural network [8 .238, 8 .300] and fuzzy logic [8 .301]
approaches .
The formation of photonic, electronic, ionic switching devices from molecular
components and their incorporation into well-defined organized assemblies repre-
sents the next step towards the development of circuitry and functional materials at
Blodgett films (see Chapter 7, Section 9.7) . The controlled build-up of such archi-
tectures requires the ability to direct self-assembly and self-organization processes
through explicit instructed procedures .