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Abstract
Stains play a vital role in any histopathological laboratory. The term "stain" denotes any dye,
reagent, or material that is used for colouring tissues and microorganisms to aid in the
microscopic study. Hematoxylin and eosin are the basic, routine and universal stains used in
all laboratories. But, specific components, structures, or substances of the tissue can accept
only a particular specific type of stain based on their chemical and biological structure or
nature. In such cases the use of a special stain is inevitable. Various special stains are being
used in histopathological laboratories. We conducted a computerized database search in
Pubmed and Google scholar to identify and collect data regarding special stains. Here in this
article, we present a brief overview of special stains used in oral pathology.
Keywords
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
2
Introduction
A "stain" is any dye, reagent, or material used for colouring tissues or microorganisms for
microscopic study. Hematoxylin and eosin (H and E) are routine and the initial stains to be
used in all tissue sections for diagnosis, but H and E stains alone are inefficient at times for an
etiologic, histogenetic, or pathogenetic prediction of disease. Hence a pathologist may require
a definitive or additional 'special' diagnostic method and special stains. "Special stains" are so-
called because they are not routinely used in staining procedures. The term "special stains"
came into use after H and E was introduced in the year 1876. Now, this term includes all the
alternative staining techniques other than H and E [1].
Diagnosis and research are two broad fields where the special stains help in the identification
of specific chemical components in abnormal and normal cells [2]. Special stains constitute
various dyes and staining methods for a particular tissue, structure, and pathogens which gives
a tissue-based diagnosis [3]. They have a significant role in demonstrating various cellular
products like carbohydrates, proteins, lipids, pigments, amyloid, microbial organisms, DNA
and RNA content of the cell [4].
The history of staining dates back to the 17th century where scientists stained the tissue with
naturally occurring materials such as indigo, madder, saffron, and phytolacca and studied the
tissue by using rudimentary microscopes. Prussian blue (1774) and Picric acid (1788) are some
of the oldest stains to be used in this era.
In the mid-1800, there were great developments in the manufacture of a variety of new
histologic stains beginning with aniline dye in 1856, which was the first of the synthetic dyes
which were discovered by William Henry Perkin. Hematoxylin, the routine stain in
histopathology and a naturally occurring substance, was reported to be first used by Wilhelm
von Waldeyer in 1863.
The Ziehl-Neelsen technique came into application in 1882 while Robert Koch developed a
technique for tubercle bacillus, Hans Christian Gram in 1884 introduced the Gram stain for
identification of Gram-positive organisms.
In 1959, Ann Preece categorized stains into three groups as routine, vital, and special stains. In
which, special stains have a more limited range which can reveal special features such as
bacteria, fungi, specific cell products, intracellular and intercellular products.
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
3
The 20th century brought new staining techniques such as silver impregnation techniques for
nerve tissue. This was followed by the introduction of dyes such as hematoxylin with eosin Y,
congo red, or safranin, combinations of basic dyes such as methylene blue, crystal violet, or
one of the azures to stain the nuclei with some contrasting acid dyes to stain the cytoplasm of
the cells.
The modern age introduced a few more histological staining techniques such as Masson's
trichrome for connective tissues, Golgi stain for neuronal fibers, toluidine blue for mast cells
and as vital stain, Kluver-Barrera stain for Lipofuscin, Mallory's CT stain and Periodic Acid
Schiff (PAS) for glycogen [1].
The chemical and biological processes involved in special staining methods depend on the
essential chemical processes of reduction and oxidation that rely on the use of acids, bases, and
buffers for an optimum presentation [5,6].
Special stains can be classified according to the type of tissue, organs, substance/fluids and
pathology of interest (Table 1) [5-7].
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
4
Feulgen Technique
Feulgen and Rossenbeck's technique is the regular method for DNA demonstration. The stain
works under the principle of Purine-deoxyribose bond breakage with minor acid hydrolysis
employed at 1M hydrochloric acid at 60°C, exposing the aldehydes which are then revealed
using Schiff reagent. Fixation of the tissue is done by formalin as Carnoy’s and Bouin's fixative
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
5
is not suitable for this technique. After the staining procedure, DNA appears red-purple and the
cytoplasm appears green in colour [8,9].
Methyl Green-Pyronin
This technique can demonstrate both DNA and RNA. Combination of methyl green and
pyronin, which are cationic, methyl green binds to DNA specifically, and pyronin binds with
RNA. DNA can be demonstrated with a bluish-green appearance, and RNA appears red [10].
Connective tissue is the supporting structure that provides the connection between cells and
organs of the body. Collagen, elastic fibers, and reticular fibers are the three main types of
connective tissue in which collagen fibers can be demonstrated by H and E stain, whereas
elastic and reticular fiber cannot be visualized using H and E, and hence special stains are used
under these conditions [11].
Van Gieson is one of the earlier methods and is still being used to demonstrate collagen, which
appears red after staining. Van Gieson stains help to differentiate between smooth muscle and
collagen fibers and an increase in collagen (Fig. 1). In combination with picric acid and acid
fuchsin, the tiny molecules of picric acid penetrate rapidly into red blood cells and muscle fiber,
and hence they can be demonstrated well [12].
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
6
Figure 1: Van Giesion stained section demonstrating collagen in red colour and muscles in
yellow colour, under 10x magnification.
Trichrome Stains
Mallory's Trichrome
Mallory's trichrome is the recommended method for the nuclear stain. There are several
modifications of this technique, but the original method is usually followed, which gives deep
blue collagen fibres, red-coloured muscles and fibrin, deep blue colour and RBCs, myelin are
stained yellow (Fig. 2) [6].
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
7
Figure 2: Section stained with Mallory’s Trichrome demonstrating collagen in blue, muscle
fibers in red and other structures in blue to black colour, under 10x magnification.
Oil Red O and Sudan Black B techniques are used for the demonstration of fats and
phospholipids in which lipids demonstrate brilliant red in oil red O technique, and unsaturated
esters and triglycerides appear blue to black. In Sudan black B technique, phospholipids appear
grey, and under polarized light, phospholipids in myelin exhibit bronze dichroism [13,14].
The nervous tissue is composed of nervous tissue proper, neuroglia which is a particular type
of connective tissue, and connective tissue proper. The most popular technique for
demonstrating neurons is Bielschowsky, which gives brown to black coloured nerve cells and
neurofibrils and axons, and dendrites [15]. Stains used in various tissue are consisted in Table
2.
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
8
The microorganisms can be broadly classified into bacteria, fungi, and viruses. Special stains
play a significant role in identifying microorganisms in tissues and smears and helps to study
the morphology and characteristic features of these organisms (Table 3) [16].
Bacteria
Gram's Stain
Hans Christian Gram in 1884 introduced Gram stain, which helps to detect gram-positive
bacteria. The basic concept behind this stain is that abundant peptidoglycan on the cell wall of
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
9
Gram-positive bacteria retains the crystal violet dye in the cell wall. In the presence of acetone,
the diffusion between dye iodine complex is absent, and hence the blue colour is retained by
the Gram-positive organism. In the case of gram-negative bacteria, the diffusion between the
dye-iodine complex occurs easily, and hence it becomes colourless and appears pink in colour
on the application of carbol-fuchsin. Grams stains result in purple-coloured gram-negative
bacteria and pink-coloured gram-positive bacteria [4].
Zeihl-Neelsen Stain
Zeihl-Neelsen stain is a rapid technique and is used to shows acid-fast tubercular bacilli that
appears red. The principle behind this staining is that by heating, the organisms are stained with
basic fuchsin dye, and when they are treated with 1% acid alcohol, they resist decolourization.
The decolourized non-acid-fast bacilli will take up the counterstain, which is done by using
methylene blue [4].
Fungal Infection
Fungi are relatively large and have rich polysaccharides in their cell wall, which are converted
into dialdehydes due to oxidation and can be identified with Schiff's reagent or silver stains.
Grocott's methenamine silver technique is the common staining technique done to study fungal
organisms in which the walls of the fungi are stained by Grocott's methenamine silver stains
and also the outer wall of the Pneumocystis carinii organisms, which gives a black coloured
appearance to fungal organisms and pneumocystis in a green background [4].
Viral Inclusions
Viral particles can be viewed only by an electron microscope as they are too small [16]. With
the Phloxine-tartrazine method, virus inclusions can be determined as it gives a bright red
appearance of viral inclusion in a yellow background which facilitates rapid and accurate
diagnosis of viral infections [17].
Pigments can be broadly classified into endogenous, exogenous, and artifact pigments [18].
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
10
Pigments
Melanin
Melanin can be described as light brown to black pigments. Demonstration of Melanin can be
done by the Masson-Fontana technique that stains Melanin, argentaffin, chromaffin, and some
lipofuscins in black colour [20,21].
Minerals
Calcium
Calcium salts are a normal constituent of bones and teeth in the human body. Necrotic areas of
tissue allied with tuberculosis, infarction, atheroma in blood vessels, and malakoplakia of the
bladder may show abnormal calcifications. Several specials are available for the demonstration
of calcium deposits in which Von Kossa and Alizarin red S stains are commonly used in
laboratories. Calcium deposits are stained black when treated with Von Kossa (Fig.-3) and
orange-red with Alizarin red S stain respectively [6,22].
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
11
Figure 3: Von Kossa stained section shows calcium deposits in Black colour, under 10x
magnification.
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
12
Figure 4: Section stained with mucicarmine stain shows positive areas of mucin in pink
color.
Amyloid
Amyloid arises as a result of longst and ing chronic inflammatory conditions. It is usually an
eosinophilic, extracellular, amorphous substance. With H and E stain, amyloids appear as a
pale pink homogenous material, and special stain like Van Gieson shows yellow or brown
colour. When the tissue is treated with Gram's iodine, amyloid appears as mahogany brown,
which turns into blue colour with treated with 10% sulphuric acid. The carbohydrate
component contains sialic acid and shows positive staining with both Alcian blue and PAS,
demonstrated by Gottschalk [25].
Congo Red
Congo red is the gold st and ard technique for amyloid detection. This stain was developed in
1884 as a direct cotton dye and have been modified several times to get an ideal method for
amyloid detection26. Under polarized light amyloid produces a green birefringence with
Congo red staining (Fig. 5) [27-29].
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
13
Figure 5: Amyloids stained with Congo Red showing green birefringence under polarizing
light, under 10x magnification.
Various stains are used in hematology and cytology for staining peripheral blood smears, bone
marrow smears made from aspirates and biopsies [30]. Exfoliative cytology is the primary
diagnostic technique for benign or malignant lesions [31]. Regularly H and E, Papanicolaou
stains, Romanowsky have been used for staining cytological smears [32]. For a better
assessment of nucleus and cytoplasmic ratio, cell size, various types of Romanowsky stains
such as Wright Giemsa stain, MGG, Leishman stain are used [33,34]. Leishman-Giemsa
cocktail stain provides an excellent nucleus and cytoplasmic staining than PAP stain, and hence
it facilitates better diagnosis [35].
Leishman Stain
Leishman stain is named after Scottish pathologist Sir William Boog Leishman and used as a
differential stain. Leishman stain gives a better contrast between nucleus and cytoplasm by
imparting violet colour to nucleus and neutrophil granules which is achieved by the two
components, Azure B and Eosin Y [36,37].
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
14
The cytoplasm of neutrophils, osteoblasts, vascular endothelial cells, and some lymphocytes
shows alkaline phosphatase activity, and hence these can be easily determined by the leukocyte
alkaline phosphatase stain [39].
PAS stain can be used to demonstrate intracellular glycogen and neutral mucopolysaccharides
that are found variably in hematopoietic cells [40]. PAS staining is seen in blasts of both acute
lymphoblastic and acute myelogenous leukemias, there is intense positivity toward the
erythroleukemia with PAS stain [41,42].
Papanicolaou (Pap)
Pap stain was first introduced by Papanicolaou in the year 1943. Pap-stained smears are used
to detect malignant and premalignant changes [43]. Cell cytoplasm is stained with blue-green
and keratin with orange. The superficial squamous epithelial cells, nucleoli, and RBCs are
stained by Eosin Y, hence appear orange to pink, while intermediate and parabasal cells appear
turquoise green to blue [44-47].
Vital Staining
Vital stain is the stains that are applied directly to the living cells [48]. In recent times diagnostic
aids have been established with chair-side techniques using vital stain, which aids in early
detection of the lesion or condition, which are helpful prognostic indicators [49].
Toluidine Blue (TB), is an acidophilic metachromatic dye that particularly stains acidic
components of the tissue. TB has an affinity for nucleic acids, and hence it binds to tissues that
consist of nuclear material with increased DNA and RNA and are partially soluble in alcohol
and water [50,51]. Clinically, TB has been widely used as a vital stain in potentially malignant
oral lesions, and helps in the detection of the margins in early lesions. TB stained lesions can
also helpful in detecting the loss of heterozygosity and appears dark or pale royal blue [52].
Balamanikandan P | Volume 2; Issue 3 (2021) | JDHOR-2(3)-037 | Review Article
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
15
Acetic acid in the concentration of 3 to 5% was also being used for the detection of oral cancer
[53]. The positive section shows colour change to opaque white. The negative section remains
transparent white.
Rose Bengal chiefly stains the cell membranes and is used to detect epithelial dysplasia and
oral squamous cell carcinoma. The positive section shows a pink appearance [54,55].
Residual wax that presents in a tissue section does not allow the aqueous and alcoholic dyes to
pass through the sections, leaving areas devoid of stain. This produces patches in sections
where nuclei appear muddy [56].
Contaminated stains
Contamination of the stains could produce superimposed deposits over the section, which may
mislead a wrong diagnosis. Inadequately filled container or staining dish or accumulation of
staining solution at the top of the slide may cause inadequate staining [57].
Formalin Pigment
Formalin pigments appear dark brown and are composed of tiny birefringent crystals. To
prevent this, tissue can be treated with a saturated alcoholic solution of picric acid before the
staining [58].
Picric Acid
Tissue fixed with picric acid containing fixatives imparts a yellow-coloured tissue because of
its acidic nature. This can be prevented by treating the tissue with 70% ethanol before
processing [59].
Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
16
Special stains contain few chemicals that are too hazardous to be used, and hence the use of
such chemicals needs to be eliminated or reduced as much as possible [3].
Several stains and dyes used in histopathology laboratory are enormously harmful due to their
effects of toxicity, carcinogenicity, genotoxicity, immunotoxicity. Solution or reagents that
contain chloroform, chromic acid, dioxane, formaldehyde, nickel chloride, and potassium
dichromate are carcinogenic [57]. Organic solvents that are used in routine and special staining
methods are highly flammable and have flash points below 21°C. Silver solutions are
commonly used in Von Kossa stain and Masson Fontana stain, which may become explosive
upon ageing, and hence their storage after use should be strictly avoided [3].
Conclusion
Routine hematoxylin and eosin are universal stains used in all laboratories, which help
diagnosis. However, specific components, structures, or substances of the tissue can accept
only a particular specific type of stain based on their chemical and biological structure or
nature. Hence, this can be achieved with the help of special stains which stain specific type of
tissue components and play an essential role in facilitating a definite confirmatory diagnosis.
Even though there are available advanced molecular methods such as immunohistochemistry
for histopathological diagnoses, special stains play a significant role as a first-line method
before choosing higher-end diagnostic procedures.
Conflict of Interest
It is stated that there are no conflicts of interest between the proponents and participants in the
present work.
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Citation: Salian V, et al. Special Stains in Histopathology: An Oral Pathology Perspective. J Dental
Health Oral Res. 2021;2(3):1-19.
DOI: http://dx.doi.org/10.46889/JDHOR.2021.2306
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