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PII: S1878-8181(17)30261-X
DOI: https://doi.org/10.1016/j.bcab.2018.04.012
Reference: BCAB748
To appear in: Biocatalysis and Agricultural Biotechnology
Received date: 6 May 2017
Revised date: 7 April 2018
Accepted date: 17 April 2018
Cite this article as: Diskit Dolkar, Phuntsog Dolkar, Stanzin Angmo, OP
Chaurasia and Tsering Stobdan, Stress tolerance and plant growth promotion
potential of Enterobacter ludwigii PS1 isolated from Seabuckthorn rhizosphere,
Biocatalysis and Agricultural Biotechnology,
https://doi.org/10.1016/j.bcab.2018.04.012
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Stress tolerance and plant growth promotion potential of Enterobacter ludwigii PS1 isolated
a
Defence Institute of High Altitude Research, DRDO, Leh, Jammu and Kashmir, 194101, India
ABSTRACT
The study was therefore aimed at developing microbial inoculants for promoting tomato
ludwigii PS1 capable of solubilizing insoluble inorganic phosphate was isolated from
solubilize insoluble phosphate under different stress conditions viz. 4–44°C temperature, 1–
5% salt concentration and 4–12 pH range. The isolate exhibited multiple plant growth
promoting traits viz. auxin (24.3 mg L-1), siderophore (79%) and hydrogen cyanide (0.21 O.D
at 625nm) production. Tomato seed bacterization resulted in 25% and 37% increase in shoot
and root length. Inoculation of tomato seedling with PS1 promoted plant growth in pot trial
Increase in fruit yield was 15% in open and 27% in shade net condition. E. ludwigii PS1 with
phosphate-solubilizing ability under stress conditions appears to be attractive for exploring its
regions.
1
1. Introduction
Phosphorus (P) is one of the most important macronutrients for plants. It plays crucial
role in photosynthesis, seed formation and other vital physiological function making
However, a large portion of soluble inorganic phosphate applied to the soil as chemical
fertilizer is immobilized rapidly into insoluble forms-CaHPO4, Ca3(PO4)2, FePO4 and AlPO4-
and are not efficiently taken up by the plants, which lead to an excess application of P
fertilizer to crop land (Goldstein,1986; Omar, 1998). The excessive fertilization of P leads to
pollution due to soil erosion and runoff water and cause environmental and economical
soil P and are thus an integral part of the soil P cycle. In particular, soil microorganisms are
effective in releasing P from inorganic and organic pools of total soil P through solubilization
and mineralization (Hilda and Fraga, 1999). Phosphate solubilization occurs by carboxylic
al., 2004; Rodriguez et al., 2006). Currently, the main purpose in managing soil P is to
optimize crop production and minimize P loss from soils. Recently, phosphate solubilizing
bacteria (PSBs) have attracted the attention of agriculturists as soil inoculums to improve
plant growth and yield (Young et al., 1998; Goldstein et al., 1999; Fasim et al., 2002).
important factor in the establishment, multiplication and spread of microbes in soil (Zahran,
1999). The information regarding the stress-tolerant agriculturally important strains is limited
to some microorganisms, including Rhizobium strains tolerant to high salt, pH, desiccation
and temperature (Kulkarni and Nautiyal, 2000; Rehman and Nautiyal, 2002; Arun and
Sridhar, 2005; Mnasri et al., 2007), Bacillus sp. tolerant to low pH (Pal, 1998), Pseudomonas
2
pseudoalcaligenes and P. alcaligenes tolerant to salinity (Rangarajan et al., 2002), Pantoea
RMLU-26 and Pantoea agglomerans R-42 tolerant to high salinity, pH, and temperature (Son
et al., 2006; Sharan et al., 2008), Eupenicillium parvum tolerant to high desiccation, salinity,
acidity, aluminum and iron (Vyas et al., 2007) and Rhodotorula sp. tolerant to temperature,
environmental factors, especially under stress conditions (Leyval and Barthelin, 1989). Little
salt- tolerating microbes, which could enhance production of food and forage in high altitude
plant growth promoting Acinetobacter rhizosphaerae strain BIHB 723 and Rhodotorula sp.
have been isolated from the rhizosphere of Seabuckthorn (Hippophae rhamnoides L.)
growing in Indian trans-Himalayas (Gulati et al., 2008, 2009; Mundra et al., 2011). However,
presence of plant growth promoting Enterobacter sp. with multiple plant growth promotion
traits (PGPTs) is largely unknown. Therefore, in the present work, we report isolation of
stress tolerating Enterobacter ludwigii PS1, which possess multiple PGPTs like phosphate
solubilization, Indole acetic acid (IAA), siderophore production and Hydrogen cyanide
(HCN) production. Plant growth promotion potential of the isolate was established in open
3
Seabuckthorn (Hippophae rhamnoides L.) plants growing at experimental field of
longitude 77º34ʹ 0.3ʺ E, altitude 3340m amsl) were selected. Soil around the Seabuckthorn
plants was dug and the root and adhered soil were collected in plastic bags and stored at 4ºC
until analysis and isolation. Bulk soil associated near rhizosphere was used to study physico-
chemical properties of the soil. The pH and electrical conductivity of soil sample was 7.8 and
415 µS cm-1. Soil test using a soil testing kit (Lamotte Combination Soil Outfit 5010-01,
Maryland, USA) revealed presence of nitrate nitrogen 60 lb/a, phosphorus 75 lb/a, potassium
160 lb/a, calcium 2800 ppm, ferric iron 5 lb/a, nitrite nitrogen 1 ppm, sulfate 50 ppm, low
Two gram of rhizospheric soil was added in 250 ml flask with 100 ml sterile saline
(0.85% NaCl). The flask was agitated on a rotary shaker (INNOVA 4230, New Brunswick
Scientific Edison, USA) at 200 rpm for 30 min at 20ºC. Ten-fold dilutions were made in
phosphate buffer and serially diluted (10−1 to 10−9) and plated on Pikovaskaya agar medium
(pH 6.8–7.0), which contained (per liter): 0.5g yeast extract, 10g dextrose, 5g Ca3(PO4)2, 0.5g
(NH4)2SO4, 0.2g KCl, 0.1g MgSO4.7H2O, 0.0001g MnSO4.H2O, 0.0001g FeSO4.7H2O and
15g agar (Pikovskaya, 1948). This medium contained tricalcium phosphate as a sole source
of phosphorus for selective screening of microorganisms, which have the ability to release
inorganic phosphate from tricalcium phosphate. Uninoculated plates served as control. Plates
were incubated at 4oC and 32oC for 5 days and examined for presence of colonies developing
clear zone. PSBs could be easily identified because they develop clear zone around their
colonies (Gyaneshwar et al., 1999). Colonies with conspicuous clear zones around them were
picked up and further purified by repeating on Pikovaskaya agar media. Pure cultures were
maintained as a glycerol suspension (25% v/v) at -80ºC. Bacterial isolate PS1, which had a
4
marked phosphate solubilizing activity on Pikovaskaya agar as visualized by the clear zone
developed around the colony, was identified as Enterobacter ludwigii using biochemical and
16S rRNA sequencing approach by Microbial Type Culture Collection (MTCC), Institute of
2.3. Insoluble inorganic phosphate solubilization in broth culture under stress conditions
of PS1 under stress conditions was determined at 4-44ºC and pH 4-12 conditions. One
variable was changed at a time while maintaining the other factors as constant. pH 7.0 was
maintained for studying growth and phosphate solublization at different temperature, while
28ºC was maintained for studying growth and solubilization at different pH conditions. Effect
of individual salt viz KCl, NaCl and CaCl2 (1-5% concentration) on growth and phosphate
solubilization was determined at 28ºC and pH 7.0. The isolate was also tested for the capacity
to solubilize two other common types of insoluble phosphates viz. FePO4 and AlPO4 with the
concentration range of 0.4%-1.6%. The assay was done in two hundred and fifty milliliter-
culture (109 CFU ml-1). Uninoculated flasks served as a control. The flasks were incubated at
a range of temperature and pH with shaking (200 rpm) on a rotary shaker. The culture was
harvested by centrifugation at 11,400g for 30 min. Supernatant was used to assess phosphate
(1:1 v/v) to dissolve the residual insoluble phosphate and measured against a blank
identically treated (Rodriguez et al., 2000). Solubilized phosphate content of the culture
filtrate was determined by the molybdenum blue method (Murphy and Riley, 1962). Change
in pH of the culture broth was recorded using a pH meter (SensION+ PH3, HACH,
production was studied according to Patten and Glick (2002) with some modification, where
DF salt minimal media was amembed with filter sterilized 50 μg/ml L-Tryptophan and
appearance of pink auxin complex on addition of Salkosky reagent was measured at 535 nm
and result expressed in mg L-1. Siderophore production was estimated in liquid medium by
the chrome azurol-S assay in iron free media broth at pH 7.0 (Schwyn and Neilands, 1987)
and HCN production was determined by the qualitative method of Bakker and Schipper
Plant growth promotion ability of the isolate PS1 was determined independently by
paper towel method. Tomato (var. Tolstoi) seeds were surface sterilised with 1% sodium
hypochlorite and washed 5 times with sterile distilled water. Seeds were coated with peat
dried in air and the cell count was 108-109 CFU per seed as determined after reisolation from
bacterized seed. After bacterisation, 20 seeds were placed in each germination paper and
incubate in plant growth chamber (Adaptis A1000, Conviron, Canada) at 25°C and 60%
relative humidity. Seeds treated only with sterilized peat served as control. Five replication
6
for each treatment were maintained and repeated thrice. Shoot and root length of 5 seedlings
2.5.2. Pot culture assay under open and shade net condition
Pot culture assay for plant growth promotion ability of the isolate PS1 was determined
in non-sterile soil mixed with farm yard manure (10:1) in a completely randomized design in
open and green shade net conditions. A preplanting soil test revealed nitrate nitrogen 150
lb/a, phosphorus 75 lb/a, potassium 220 lb/a, ferric iron 5 lb/a, calcium 2800 ppm, nitrite
nitrogen 1 ppm and sulfate 50 ppm. Soil pH and electrical conductivity was 7.5 and 419 μS
cm-1. Urea (0.2g/pot) was applied in two split doses at vegetative and reproductive growth
stage. The mean maximum temperature during the crop growing period was 21.0±2.6ºC
while the mean minimum temperature was 8.3±2.0ºC. Root of 30 days old tomato (var.
Tolstoi) seedlings raised in a passive greenhouse without microbial treatment were washed
with sterile distilled water and soaked in peat based bacterial suspension at the concentration
of 109 cells ml-1 about 30 min prior to plantation. Number of leaf, number of flower bud and
fruit, and stem diameter were recorded at 30, 60 and 90 days after transplant (DAT). At the
end of the experimental period (90 DAT), plants were uprooted, washed under running water,
All statistical analysis was performed using SPSS for Windows 17.0 version. One-
way ANOVA was performed with the help of 2-sided Tukey’s HSD at P ≤ 0.05. Independent
3. Results
phosphate solubilizing activity at 4°C and 32ºC. Bacterial isolate PS1, which had a marked
visualized by clear zone developed around the colony was selected and later checked for
temperature, salt and pH stress tolerance. PS1 was a Gram negative bacterium. The isolate
showed negative for casein hydrolysis, oxidase and urease tests, and positive for catalase and
citrate utilization tests. PS1 was identified as Enterobacter ludwigii using biochemical and
microbial growth and media pH are given in Table 1. Different incubation temperatures had
significant effect on phosphate solubilization, growth of culture and resultant media pH. The
highest growth and phosphate solubilizing activity was obtained at 28°C at which soluble
phosphate concentrations was 327 mg L-1 and maximum drop in pH was observed.
Effect of initial pH on phosphate solubilization and growth of PS1 are shown in Table
2. Initial pH of the medium had significant effect on phosphate solubilization and microbial
growth. Isolate PS1 was able to solubilize Ca3(PO4)2 at pH range of 4 to 12 and the phosphate
solubilization ranged from 118.4 to 363 mg L-1. Highest soluble phosphate and microbial
solubilization are presented in Table 3. Results showed that amount of soluble phosphate
production was less affected by presence of KCl as compared to NaCl and CaCl2 in varying
significantly with increased concentration of KCl, NaCl and KCl. Therefore, the isolate is not
8
very resistant to high salt concentration. The isolate solubilized Ca3(PO4) to a greater extent
E. ludwigii PS1 was tested for PGPTs at 28°C at different time intervals upto 5 days.
IAA, siderophore and HCN production are presented in Table 5. IAA production was
production ranged from 24 to 79.2% at different time interval and maximum value was
recorded at 60 h. PS1 also showed HCN production with increasing trend upto 48 h followed
by a declining trend.
PS1 showed plant growth promotion activity as determined by paper towel method.
The mean shoot and root length of tomato seedling germinated from bacterized seed after 10
days was 4.5±0.7 cm and 7.8±1.2 cm, as compare to 3.6±0.4 cm and 5.7±0.8 cm in case of
untreated seed. Therefore, increase in shoot and root length due to PS1 treatment was 25%
Results of pot culture assay for plant growth promotion ability of the isolate PS1 is
presented in Table 6. Significantly higher vegetative growth (at 30, 60 and 90 DAT) and fruit
yield (at 90 DAT) was observed in PS1 treated seedlings in open field condition. However,
under green shade net condition, enhanced vegetative growth in PS1 treated plants was more
conspicuous at 60 and 90 DAT. The mean shoot and root biomass of PS1 treated tomato
plants in shade net after 90 days was 144±22 g and 9±5 g, as compare to 128±26 g and
4.2±0.3 g in case of uninoculated seedlings. Therefore, increase in shoot and root biomass
9
due to PS1 treatment was 12.5% and 114% over control. Increase in fruit yield due to PS1
treatment was 15.2 and 27.0% in open and shade net conditions.
4. Discussion
environmental conditions. It is suggested that the antistress effect of diazotrophs on the plants
conditions (Belimov et al., 1994). The bacterial isolate PS1 was able to grow and solubilize
inorganic phosphates at wide temperatures ranging from 4 to 44°C. The survival and
inorganic phosphate solubilizing activity of the isolate under wide range of temperature is of
significance in area experiencing low temperature such as the trans-Himalayan region. Even
though the growth and inorganic phosphate solubilizing activity of PS1 was highest at pH 7,
the isolate was able to grow and produce soluble phosphate at wide initial media pH ranging
from of 4 to 12. Similar results was observed by Son et al. (2006) in Pantoea agglomerans R-
42 and Mundra et al. (2011) in Rhodotorula sp. PS4, which are also capable of solubilizing
and phosphate solubilizing activities. Soil of trans-Himalayan region is alkaline and villages
adjoining rivers are salt affected. Therefore, PS1 with characteristics to grow at wide pH
Although PS1 was isolated from low temperature environment, the result showed that
its growth and activity was highest at 20ºC. Similarly, even though the bacterium was
isolated from alkaline soil (pH 7.8), its growth and phosphate solubilizing activity was
10
highest at neutral pH. The results suggested that optimal conditions for microbial growth and
Inorganic phosphate solubilizing activity of PS1 was recorded highest (334 mg L-1) at
28°C. In comparison the values are 334 mg L-1 in case of Acinetobacter strain at 26°C
(Chaiharn and Lumyong, 2009), 184 mg L-1 at 28°C for mutant Pseudomonas flurorescens
(Katiyar and Goel, 2003), 900 mg L-1 by Pantoea agglomerans at 30°C (Son et al., 2006), 80
mg L-1 at 20°C by mutant Pseudomonas corrugata (Trivedi and Sa, 2008). Therefore, the
other reported species. Similarly, the inorganic phosphate solubilizing activity of PS1 was
recorded highest (363 mg L-1) at pH 7. In comparison the values are 215 mg L-1 in case of
Pantonea aggrolmerans at pH 7.5 (Son et al., 2006) and 278 mg L-1 at pH 7 for Rhodotorula
(KCl, NaCl and CaCl2) concentration. However, a decrease in phosphate solubilization with
increasing salt concentration was observed, which is in agreement with earlier reports
(Sharan et al., 2008; Mundra et al., 2011). The amount of phosphate solubilized gradually
decrease with increased concentration of NaCl and KCl. On the contrary, there was a large
decrease in solubilization of Ca3(PO4)2 with increasing CaCl2 concentration. Son et al. (2006)
and Mundra et al. (2011) also observed similar phenomenon with increasing concentration of
Rhodotorula PS4.
production of soluble phosphate from Ca3(PO4)2 was significantly higher compared to AlPO4
and FePO4. The result is in agreement with earlier observations in Pantoea agglomerans R-42
(Son et al., 2006) and Rhodotorula sp. PS4 (Mundra et al., 2011). Preference for Ca3(PO4)2
11
over AlPO4 and FePO4 has also been reported in Pseudomonads (Gulati et al., 2008), Pantoea
PGPR with multifaceted PGPTs are more beneficial to crop than biofertilizers with
only phosphate solubilizing ability (Hariprasad and Niranjana, 2009; Mehta et al., 2014).
of auxin in plant growth and development has been extensively reviewed (Zaharan, 1999).
Auxin production by Pseudomonas putida has been shown to associate with enhanced host
plant root system, improved mineral and water uptake by the root (Patten and Glick, 2002).
Microbially secreted siderophores interact with insoluble ferric (Fe3+) complexes and reduced
to biologically relevant ferrous (Fe2+) form (Dimkpa, 2016). HCN production is known to be
multiple PGPTs, like phosphate solubilization, IAA, siderophore and HCN production.
Seed bacterization and treatment of tomato seedlings with PGPR belonging to the
genus Bacillus (Mena-Violante et al., 2007; Hariprasad and Niranjana, 2009; Mehta et al.,
2014), Pseudomonas, Azotobacter, Serratia (Hariprasad and Niranjana, 2009) have been
reported to increase plant growth and yield. In this study, an increase in the plant growth by
seed bacterization and seedling treatment with E. ludwigii PS1 was demonstrated. The
increased growth and fruit yield may be attributed to the cumulative effect of phosphate
solubilization, IAA, siderophore and HCN production, which promote plant growth directly,
indirectly, or synergistically.
Enterobacter (Hwangho et al., 2003; Walpola et al., 2013). However, the present
investigation on E. ludwigii PS1 is the first report on phosphate solubilizing activity of the
genus under varying temperature, pH and salt stressed conditions. The isolate possessed
multiple PGPTs, like phosphate solubilization, IAA, siderophore and HCN production. The
12
result of this study provides a strong basis for further development of this isolate as a
high altitude regions. However, long term studies in actual field conditions are required.
Acknowledgements
The study was supported by Defence Research and Development Organisation (DRDO),
Ministry of Defence, Government of India. DD, PD and SA are grateful to DRDO for
providing Senior Research Fellowship. The authors also acknowledge the Microbial Type
Culture Collection and Gene Bank, Institute of Microbial Technology, Chandigarh, India for
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18
Table 1 Effect of different incubation temperatures on Ca3(PO4)2 solubilization by
Enterobacter ludwigii PS1 and concomitant microbial growth and final media pH
19
Table 3 Effect of different salts and their concentrations on Ca3(PO4)2 solubilization by E.
ludwigii PS1
Table 4 Effect of different insoluble phosphate and their concentration by E. ludwigii PS1 in
modified Pikovaskaya broth media containing various insoluble phosphate sources
Conc. Growth(A600) Soluble P (mg L-1)
AlPO4 FePO4 Ca3(PO4)2 AlPO4 FePO4 Ca3(PO4)2
0.4% 1.4±0.018yd 1.3±0.008xd 1.3±0.004xa 56.6±1.3xd 65.4±0.4yd 327.7±1.5za
0.8% 0.8±0.003yc 0.7±0.042xc 1.4±0.004zb 48.1±1.4xc 50.1±0.5xc 348.2±8.1yb
1.2% 0.6±0.006yb 0.5±0.015xb 1.6±0.015zc 36.6±6.4xb 48.6±0.5yb 439.5±2.9zc
1.6% 0.5±0.007ya 0.5±0.006xa 1.9±0.012xd 13.7±0.8xa 43.6±0.4ya 480.2±9.4zd
a, b, c, d
different superscripts in a column differ significantly (P<0.05)
x, y, z
different subscripts in a row differ significantly (P<0.05)
20
Table 5 Plant growth promoting traits of E. ludwigii PS1 at 28°C
Table 6 Effect of inoculation of E. ludwigii PS1 on growth and fruit yield of tomato (var.
Tolstoi)
21
Highlights
22