Professional Documents
Culture Documents
To cite this article: Franciscus Ginting, Adhi Kristianto Sugianli, Morris Barimbing, Nina Ginting,
Mardianto Mardianto, R. Lia Kusumawati, Ida Parwati, Menno D. de Jong, Constance Schultsz
& Frank van Leth (2021) Appropriateness of diagnosis and antibiotic use in sepsis patients
admitted to a tertiary hospital in Indonesia, Postgraduate Medicine, 133:6, 674-679, DOI:
10.1080/00325481.2020.1816755
CLINICAL FEATURE
ORIGINAL RESEARCH
CONTACT Frank van Leth f.c.vanleth@amsterdamumc.nl Amsterdam University Medical Centres, Location AMC, Amsterdam 1105 AZ, The Netherlands
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License (http://creativecommons.org/licenses/by-nc-nd/4.0/),
which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited, and is not altered, transformed, or built upon in any way.
POSTGRADUATE MEDICINE 675
provide a judgment on the quality of the current service, while Antibiotic treatment is classified as probable appropriate if,
a clinical audit aims to measure clinical practise against pre-set in the absence of a positive blood culture, all micro-organisms
targets[10]. Although Indonesia provides guidelines for the identified in cultures of any other patient specimens are sus
diagnosis and management of sepsis, it does not define tar ceptible for these antibiotics. Inappropriate antibiotic treat
gets to define quality of care, precluding the clinical audit ment is the administration of at least one antibiotic to which
approach. none of the micro-organism cultured from blood or other
specimens (in the absence of blood culture) is susceptible.
Appropriateness of antibiotic treatment is unknown if there
Methods is no positive culture, or no cultures are performed.
Ethics approval In addition, we compared whether or not the antibiotic treat
ment at sepsis diagnosis differed from the empirical antibiotic
The study was approved by the institutional ethical review treatment given during admission, and if this empirical treat
boards of the Faculty of Medicine, Universitas of Sumatera ment was in line with the Indonesian treatment guidelines.
Utara and H Adam Malik General Hospital, Medan, Sumatra Antibiotic susceptibility testing (AST) was performed in the
(286/KOMET/FKUSU/2013). Given the use of data derived hospital microbiology laboratory using the Vitek2 Compact plat
solely from the hospital administrative system, no individual form (Biomerieux, France), and following CLSI guidelines. AST
informed consent was required. results were interpreted using CLSI-defined breakpoints (version
2016), in which an intermediate test result was considered
Design and setting resistant.
Analyses were stratified for patients admitted to the inten
This retrospective study is a review of medical records with sive care unit (ICU) or non-ICU wards, and the sepsis being
regards to the diagnosis and management of adult patients community-acquired or hospital-acquired, the latter being
with sepsis, admitted to Adam Malik Hospital in Medan, defined as a sepsis developed at least 48 hours after hospital
Indonesia. Adam Malik Hospital is a tertiary facility with 721 admission. Patients who did not receive any antibiotics were
beds servicing mostly patients coming from North Sumatera excluded from the analysis of appropriateness.
Province. The hospital admits around 55,000 patients every year.
Statistical analysis
Patient population and data collection
Data on antibiotic use, performance of cultures, and appropri
The identification of patients to be included in the review ateness of treatment are summarized as frequencies and per
followed a hierarchical approach. We extracted all medical centages. This study being a process evaluation, we did not
records belonging to patients with a discharge diagnosis of perform any hypothesis testing. Analyses were performed
sepsis in the Hospital Information System for the using STATA version 12 (College Station, Texas, USA).
complete year of 2016. From these, we selected those records
that used the International Classification of Diseases-tenth
revision (ICD-10) code for sepsis, after which we selected Results
those records compatible with the Sepsis-2 definition of sep
Study population
sis. The final selection step limited the study population to
adults (17 years of age or older). We hand-searched the The Hospital Information System recorded 1,200 patients with
selected medical records for information with regards to a discharge diagnosis of sepsis in 2016. Of these records, 950
demographic characteristics, underlying condition (Charlson (79%) had an ICD-10 code for the diagnosis, of which 636
Comorbidity Index), results of cultures and antimicrobial sus (67%) were Sepsis-2 compatible (Figure 1). The main reason
ceptibility tests, length of hospital stay, source of infection for not having a Sepsis-2 compatible diagnosis was the
leading to sepsis, and antibiotic treatment received. absence of any reference to sepsis in the medical record,
Information on culture and AST was extracted from the other than the discharge note. The selection procedure iden
Hospital Information System if not present in the medical tified 535 medical records of adult patients, the characteristics
record, which might have happened if the patient died or of whom are reported in Table 1. Of these, 295 (55%) patients
was discharged before these results were received from the were diagnosed with a community-acquired sepsis, and 240
laboratory. The extracted information followed a pre-defined (45%) patients with a hospital-acquired sepsis.
protocol and was reviewed by two independent physicians.
Table 1. Patient characteristics. Table 2. Management and appropriateness of antibiotic treatment of patients
Community- Hospital with sepsis.
ICU Non-ICU acquired acquired* Community Hospital
n = 150 n = 385 n = 295 n = 240 ICU Non-ICU acquired acquired*
n % n % n % n % n = 150 n = 385 n = 295 n = 240
Age group n % n % n % n %
17–24 5 3.3 20 5.2 12 4.1 13 5.4 Empirical antibiotic 150 100 381 99.0 293 99.3 238 99.2
25–34 12 8.0 53 13.8 33 11.2 32 13.3 treatment given during
35–44 21 14.0 50 13.0 37 12.5 34 14.2 admission
45–54 31 20.7 94 24.4 69 23.4 56 23.3 Culture performed (at least 116 77.3 276 71.7 187 63.4 205 85.4
55–64 45 30.0 86 22.3 75 25.4 56 23.3 one)
65≥ 36 24.0 82 21.3 69 23.4 49 20.4 Blood culture performed 87 58.0 182 47.3 142 48.1 127 52.9
Gender Growth in blood culture 28 32.2 46 25.3 39 27.5 35 27.6
Female 63 42.0 153 39.7 131 44.4 85 35.4 Antibiotic treatment given 148 98.7 377 97.9 292 99.0 233 97.1
Male 87 58.0 232 60.3 164 55.6 155 64.6 at diagnosis
Charlson index Appropriateness of n = 148 n = 377 n = 292 n = 233
0–3 61 40.7 187 48.6 131 44.4 117 48.7 antibiotic treatment at
4–7 77 51.3 173 44.9 149 50.5 101 42.1 diagnosis**
8–11 11 7.3 23 6.0 14 4.8 20 8.3 Definite# 6 4.1 12 3.2 10 3.4 8 3.4
≥12 1 0.7 2 0.5 1 0.3 2 0.8 Probable† 13 8.9 35 9.3 21 7.2 27 11.6
Focus of infection** Inappropriate$ 57 38.5 145 38.5 71 24.3 131 56.2
Pneumonia 104 69.3 275 71.4 217 73.6 162 67.5 Unknown¶ 72 48.7 185 49.1 190 65.1 67 28.8
Urinary tract infection 38 25.3 81 21.0 56 19.0 63 26.3
SSTI 25 16.7 62 16.1 49 16.6 38 15.8 ICU: Intensive Care Unit; * > 48 hours after admission diagnosed
IAI 11 7.3 26 6.8 15 5.1 22 9.2 ** patients not starting antibiotics at sepsis diagnosis are excluded (n = 10)
#
Other 16 10.7 63 16.4 37 12.5 42 17.5 the administration of antibiotics for which all micro-organisms identified in
blood cultures are susceptible;
* > 48 hours after admission diagnosed; ** multiple foci per patient possible; †
In the absence of a positive blood culture, if all micro-organisms identified in
ICU: Intensive Care Unit; SSTI: Skin and soft tissue infection IAI: intra- any other culture are susceptible;
abdominal infection; $
the administration of antibiotics for which none of the micro-organism identi
fied in blood cultures, or any other cultures (in the absence of blood culture) is
susceptible.
no positive culture, or no cultures are performed.
sepsis (127/240; 53%) versus community-acquired sepsis (142/
295; 48%, Table 2).
treatment). Cephalosporins were by far the most preferred
All but four patients started on empirical antibiotic treat
antibiotics in any of the settings (70–80%), followed by the
ment during admission (Table 2), although in around one-third
quinolones (30–50%). Meropenem was used in almost half the
of the patients (147/521), the empirical antibiotic treatment
number of patients with sepsis in the ICU.
provided consisted of antibiotics from a single class (Table 3).
Empirical treatment according to the Indonesian sepsis guide
lines was provided for 101/150 (67.3%) patients in the ICU,
256/385 (66.5%) patients on non-ICU wards, 154/240 (64.2%) Appropriateness of antibiotic treatment
patients with a hospital-acquired sepsis, and 203/295 (68.9%)
patients with a community-acquired sepsis. The preferred Appropriateness of antibiotic treatment was based on the
combination was a cephalosporin with a fluoroquinolone regimen received at the time that sepsis was diagnosed,
(n = 125, 35% of combination antibiotic treatment), followed defined as the time sepsis was first reported in the medical
by the combination of cephalosporin, fluoroquinolone, and record. Ten patients were excluded from this analysis as they
metronidazole (n = 29, 8.1% of combination antibiotic had died before antibiotics could be started.
POSTGRADUATE MEDICINE 677
One in two patients, 257/525 (49.9%) received antibiotic (74.2%) were using their initial empirical treatment regimen.
treatment with unknown appropriateness, of whom 141/257 However, of all patients receiving inappropriate antibiotic
(54.9%) because no cultures were taken, and 116/257 (45.1%) treatment at the time of sepsis diagnosis, 46/202 (22.8%)
because all cultures were negative. were on a changed treatment regimen.
The frequency of inappropriate antibiotic treatment was For 114/525 (21.7%) patients, the antibiotic treatment at
high, reaching 38.5% of all patients admitted to the ICU the time of sepsis diagnosis was different from the initial
(n = 148) or a non-ICU ward (n = 377). More than half of the empirical antibiotic treatment received. This was clearly more
patients (56.2%) treated for hospital-acquired sepsis (n = 233) frequent in patients with at least one culture taken (101/384;
received inappropriate antibiotic treatment (Table 2). 26.3%) compared to patients with no cultures taken (13/
Consequently, appropriateness of antibiotic treatment at 141; 9.2%).
the time of sepsis diagnosis was low, with 18/525 (3.4%)
patients receiving definite appropriate antibiotic treatment,
and 48/525 (9.1%) patients receiving probable appropriate Discussion
antibiotic treatment (Figure 2). The current study shows that patients with sepsis frequently
Of all patients receiving definite or probable appropriate receive inappropriate antibiotic treatment in a tertiary health
antibiotic treatment at the time of sepsis diagnosis, 49/66 facility in Medan, Indonesia, and that appropriateness could
678 F. GINTING ET AL.
often not be assessed due to the absence of any microbiolo specimens. Our data show that this careful balance was
gical culture, or available cultures being negative. not met, as cultures from blood or the suspected focus of
Inappropriate antibiotic treatment in patients with severe infection were obtained infrequently. When taken, cultures
sepsis or septic shock has been linked to increased mortality. frequently did not show any growth. This latter observation
A systematic review and meta-analysis of this association is likely due to the known high frequency of self-medication
including 70 studies reported a doubling in odds for 30-day with readily available antibiotics, or generous antibiotic pre
all-cause mortality when antibiotic treatment in the first scription practises by physicians, including in tertiary care
48 hours was inappropriate[11]. settings in Indonesia[16]. Combining the absence of cultures
Not only the antibiotic therapy at sepsis diagnosis was with the observation that a change in antibiotic treatment
often inappropriate, also the empirical treatment given dur could still lead to an inappropriate antibiotic treatment
ing admission in this patient group was. The received regimen raises the question whether or not the results of
empirical treatment differed in less than 30% of the patients cultures and AST are an integral part of clinical decision-
from the (often inadequate) antibiotic treatment at sepsis making. Diagnostic and antimicrobial stewardship go hand-
diagnosis, and the empirical treatment followed prevailing in-hand. There is a clear role for the microbiology laboratory
Indonesian treatment guidelines in less than 70% of the in antimicrobial stewardship programs [17], while continu
patients (antibiotics from at least two different classes). ous education of care providers on antimicrobial resistance
Because we used routine data for the study, we cannot and its stewardship is warranted for curbing AMR[18].
know for certain why there is a high frequency of inappropri The study included just 45% of patients who had
ate antibiotic treatment for patients with sepsis. However, a discharge diagnosis of sepsis recorded in the hospital
some potential reasons could be envisioned. administration system. This points towards poor record
Firstly, it may be due to logistical problems when results keeping and administration on one hand, and insufficient
of antimicrobial sensitivity testing do not reach the treating quality control on the other hand. The latter refers to the
physician in a timely manner for appropriate treatment to possibility that a sepsis diagnosis can be recorded in the
start or initial inappropriate treatment to change. A second system without a matching ICD-10 code available. The for
reason may be a mismatch between the prevailing antimi mer refers to issuing a discharge note of sepsis by the
crobial resistance (AMR) prevalence in the hospital and attending physician, while the medical file does not provide
treatment guidelines. Indonesia has its own guidelines for adequate proof for the diagnosis. The resulting mismatch of
the treatment of infectious diseases, including sepsis [9]. diagnosis and administrative information is worrisome, as
Its strong reliance on the use of cephalosporins and fluor automated medical record systems are usually the primary
oquinolones is in line with the guidance provided in several source to assess a wide variety of indices related to hospital
syndrome-specific antibiotic treatment guidelines from the care.
Infectious Disease Society of America, but clearly does not We believe our study sample can be considered sufficiently
consider the high prevalence of AMR for these drugs reported representative for this study as it consists of a homogenous
in the country. patient group for which sepsis treatment was indicated.
This situation will be compounded if actual knowledge of In conclusion, diagnosis and management of patients
the prevalence of AMR is absent. This can occur when there with suspected sepsis in a tertiary referral hospital in
are no proper data on AMR patterns, and/or if this information Indonesia can be improved. There is a clear need in
does not reach the treating physician. encouraging attending physicians to obtain the much-
Low- and middle-income countries often lack information required blood cultures, or cultures from the suspected
on the prevalence of AMR due to the absence of surveillance source of infection before empirical antibiotic treatment is
networks, and limited laboratory capacity[12]. This also holds started. This will improve the use of appropriate antibiotic
for Indonesia where information on AMR is infrequently treatment strategies, and potentially reduce the high mor
derived from a limited number of university laboratories[13]. tality currently seen in this patient group. In parallel, the
We know from our earlier work that AMR prevalence is high in hospital should review its empirical treatment guidelines in
Indonesia, and can differ markedly between settings and even line with the observed spectrum of sepsis-associated micro-
hospital wards [14,15]. organisms and their antimicrobial susceptibility profile with
There is a clear need for strategies that can provide rapid a special attention to multidrug resistance. Relying on glo
and locally relevant information on AMR to guide empirical bal treatment guidelines in a setting known for its high
antibiotic treatment choices in a variety of settings. We prevalence of antimicrobial resistance is no option. This
showed earlier that this is possible by assessing whether the intervention fits well with the recommendations of antimi
prevalence of AMR is above a clinically relevant level that crobial stewardship activities in sepsis management[19].
precludes the use of an antibiotic, rather than attempting to
assess a precise AMR prevalence[15].
Funding
The clinical care of patients with suspected sepsis
requires a careful balance between speed and accuracy in This work was funded by the Royal Netherlands Academy of Arts and
which the severity of the clinical condition of the patient Sciences as part of the Scientific Program Indonesia–the Netherlands
plays a crucial role. But designing an appropriate antibiotic (SPIN). Peer reviewers on this manuscript have no relevant financial or
other relationships to disclose.
treatment strategy requires all efforts to obtain culture
POSTGRADUATE MEDICINE 679