Experts

Expert1
Expert2
Expert3
Expert4
Expert5
Expert6
Expert7
Expert8
Expert9
Expert10

CheeseID
C1
C2
C3
C4

Acidity

Expert1
Strangeness Hardness
Acidity
2
2
2
4
2
1
7
1
2.5
4.5
2
1.5

Expert2
2
4
11
1

Expert2
Strangeness Hardness
Acidity
1
2
3
4
1
7
2
2.8

Expert3
Strangeness Hardness
2
2
3
1
7
2
3
2

Acidity
3
2
4
2

Expert4
Strangeness
1
4
5
2
11
1
7
1

Expert4
Hardness

Acidity
1
1
4
2

Expert5
Strangeness Hardness
2
2
2
2
14
1
9
1

Acidity
1
1
2
2

Expert6
Strangeness Hardness
1
1
2
0
1
1.5
9.5
1
4
5.5
1
2.5

Acidity

Expert7
Strangeness Hardness
2
3
4
4
11
1
7.5
2

Expert8
Acidity
Strangeness Hardness
Acidity
2
0.8
1
1
1
1.8
1
0.5
3
10.5
1
4.3
2
5.5
4
2

Expert9
0.8
2
11
4.5

Expert9
Strangeness Hardness
Acidity
1
2.3
2
1.3
1
4.3
3
3.3

Expert10
Strangeness Hardness
1.3
3
3
3.3
2
2.8
9.5
3
4
6
2
4

XLSTAT 2008.7.01 - Generalized Procrustes Analysis (GPA) - on 11/4/2008 at 6:52:14 PM

Configurations: Workbook = demoGPA.xls / Sheet = Data / Range = Data!$D$2:$AG$6 / 4 rows and 30 columns
Number of configurations: 10
Configuration labels: Workbook = demoGPA.xls / Sheet = Data / Range = Data!$A$1:$A$11 / 10 rows and 1 colum
Object labels: Workbook = demoGPA.xls / Sheet = Data / Range = Data!$C$2:$C$6 / 4 rows and 1 column
Type of biplot: Correlation biplot / Coefficient = Automatic
Seed (random numbers): 4098208

Iterations:

PANOVA table:
Source
DF Sum of squares
Mean squares
Residuals after scaling
45
47.622
1.058
Scaling
9
36.392
4.044
Residuals after rotation
54
84.014
1.556
Rotation
27
26.121
0.967
Residuals after translation
81 110.135
1.360
Translation
27
64.381
2.384
Corrected Total 108 174.516
1.616

Pr > F

3.821

0.001

0.914

0.591

2.253

0.008

Residuals by object:
Object
C1
C2
C3
C4

Residual
9.614
14.403
1.721
21.884

Residuals by object
25

20

Residuals

15

10

0
C1

C2

C3

Object

C4

Re

10

0
C1

C2

C3

C4

Object

Residuals by configuration:
Object
Expert1
Expert2
Expert3
Expert4
Expert5
Expert6
Expert7
Expert8
Expert9
Expert10

Residual
3.225
15.240
6.051
3.991
5.152
5.964
2.507
2.907
0.989
1.595

Residuals by configuration
18
16
14

Residuals

12
10
8
6
4
2
0
Expert2
Expert1

Expert4
Expert3

Expert6
Expert5

Configuration

Scaling factors for each configuration:

Object
Expert1
Expert2
Expert3
Expert4

Factor
2.015
0.761
1.756
0.958

Expert8
Expert7

Expert10
Expert9

Expert5
Expert6
Expert7
Expert8
Expert9
Expert10

0.740
0.961
1.057
0.906
0.944
1.240

Scaling factors for each configuration

2.5

Scaling factors

1.5

0.5

0
Expert2
Expert4
Expert6
Expert8
Expert10
Expert1
Expert3
Expert5
Expert7
Expert9

Configuration

Results of the consensus test:

Permutations
500
Rc
0.826
Quantile
100.000

Histogram (Rc / 500 permutations)

200
180
160
140

Frequency

120
100
80
60
40
21

20

6 6
1

0
0

0.1

0.2

0.3

0.4

0.5

Rc

0.6

0.7

0.8

0.9

Frequency

120
100
80
60
40
21

20

6 6
1

0
0

0.1

0.2

0.3

0.4

0.5

0.6

0.7

0.8

0.9

Rc

Results of the dimensions test:

F1
Permutations
500
F
158.359
Quantile
100.000
DF1
3
DF2
36
F (Critical value)2.866
p-value
< 0.0001
alpha
0.05

F2

F3

500
31.392
100.000
3
36
2.866
< 0.0001
0.05

500
21.801
91.600
3
36
2.866
< 0.0001
0.05

Histogram (F2 / 500 permuta

120

100

100

80

80

Frequency

Frequency

Histogram (F1 / 500 permutations)

120

60

40

40

20

20

12.6
3.63.6
0.6

0
0

20

40

60

80

100

120

Objects coordinates before PCA:

D1
-3.826

D2
-0.142

140

160

0
180

10

15

20

Results for the consensus configuration:

C1

60

D3
-0.074

C2
C3
C4

-2.040
5.415
0.451

0.002
-0.621
0.761

-1.209
1.496
-0.213

F1
Eigenvalue
12.730
Variability (%) 95.975
Cumulative % 95.975

F2
0.405
3.050
99.025

F3
0.129
0.975
100.000

Eigenvalues:

Scree plot
14

100

12

Eigenvalue

10
60

8
6

40

4
20
2
0

0
F1

F2

F3

axis

Correlations between dimensions and factors:

Acidity
Strangeness
Hardness

F1
1.000
-0.912
0.958

F2
0.011
0.348
-0.270

F3
-0.003
-0.216
-0.098

Dimensions (axes F1 and F2: 99.02 %)

1
0.75
0.5
0.35

F2 (3.05 %)

0.25
0

0.01

-0.25

-0.27

-0.5

Cumulative variability (%)

80

0.75
0.5
0.35

F2 (3.05 %)

0.25
0

0.01

-0.25

-0.27

-0.5
-0.75
-1
-1

-0.75

-0.5

-0.25

0.25

0.5

0.75

F1 (95.97 %)

Objects coordinates after PCA:

F1
-3.733
-2.256
5.637
0.351

C1
C2
C3
C4

F2
-0.843
0.542
-0.383
0.684

F3
-0.140
0.492
0.135
-0.487

Objects (axes F1 and F2: 99.02 %)

5
4
3

F2 (3.05 %)

2
1

0.68

0.54
0

-0.38
-0.84

-1
-2
-3
-5

-4

-3

-2

-1

F1 (95.97 %)

Biplot (axes F1 and F2: 99.02 %)

30

F2 (3.05 %)

20

10

Biplot (axes F1 and F2: 99.02 %)

30

F2 (3.05 %)

20

10

-0.54

0.34

0.43
0.35
0.01
-0.27

-0.24

-10
-20

-10

10

20

30

F1 (95.97 %)

Results for the configurations:

Variance by configuration and by factor (%):
Configuration
Expert1
Expert2
Expert3
Expert4
Expert5
Expert6
Expert7
Expert8
Expert9
Expert10

F1
91.336
94.550
89.211
95.810
99.658
99.565
96.136
90.253
94.515
96.476

F2
8.019
3.645
7.601
3.980
0.166
0.320
3.032
5.666
3.463
2.677

F3
0.645
1.805
3.189
0.210
0.175
0.115
0.832
4.081
2.022
0.847

Variance by configuration and by factor

100
90
80

Expert1
Expert2
Expert3
Expert4
Expert5
Expert6
Expert7
Expert8
Expert9
Expert10

Variance (%)

70
60
50
40
30
20
10
0
F1

F2

Dimension

F3

Expert8
Expert9
Expert10

30
20
10
0
F1

F2

F3

Dimension

Correlations between dimensions and factors (Expert1):

Acidity
Strangeness
Hardness

F1
0.966
-0.912
0.614

F2
0.193
0.348
-0.756

F3
0.172
-0.216
-0.225

Correlations between dimensions and factors (Expert2):

Acidity
Strangeness
Hardness

F1
0.823
-0.352
0.884

F2
-0.307
0.838
-0.059

F3
0.478
0.417
0.464

Correlations between dimensions and factors (Expert3):

Acidity
Strangeness
Hardness

F1
0.959
0.365
0.637

F2
-0.141
-0.492
-0.763

F3
0.246
-0.790
0.109

Correlations between dimensions and factors (Expert4):

Acidity
Strangeness
Hardness

F1
0.961
-0.770
0.988

F2
0.266
-0.637
-0.150

F3
0.076
0.041
-0.047

Correlations between dimensions and factors (Expert5):

Acidity
Strangeness
Hardness

F1
0.969
-0.839
0.839

F2
0.014
-0.236
0.236

F3
-0.246
0.490
-0.490

Correlations between dimensions and factors (Expert6):

Acidity
Strangeness

F1
0.956
0.000

F2
-0.075
0.000

F3
-0.282
0.000

Hardness

0.942

-0.293

-0.164

Correlations between dimensions and factors (Expert7):

Acidity
Strangeness
Hardness

F1
0.982
-0.870
0.782

F2
0.160
0.220
-0.515

F3
-0.098
0.441
-0.351

Correlations between dimensions and factors (Expert8):

Acidity
Strangeness
Hardness

F1
0.996
0.057
0.964

F2
0.004
0.620
-0.230

F3
-0.090
-0.782
-0.137

Correlations between dimensions and factors (Expert9):

Acidity
Strangeness
Hardness

F1
0.997
-0.131
0.870

F2
-0.073
0.905
-0.220

F3
0.029
-0.404
-0.441

Correlations between dimensions and factors (Expert10):

Acidity
Strangeness
Hardness

F1
0.988
0.267
0.814

F2
0.147
-0.964
0.136

F3
-0.045
-0.007
-0.565

Dimensions (axes F1 and F2: 99.02 %)

1
0.84

0.91

0.75
0.62
0.5

Column D
Column D

0.35

F2 (3.05 %)

0.25

0.240.27
0.19 Column D
0.15
0.14 0.16

0.22

Column D

0.01
0
Column D
-0.06
-0.07
-0.08
-0.14
-0.15 Column D
-0.22
-0.23 Column D
-0.29
-0.31

0
-0.24

-0.25

-0.49

-0.5

-0.51

-0.64
-0.75

-0.76
-0.76
-0.96

-1
-1

-0.75

-0.5

-0.25

F1 (95.97 %)

0.25

0.5

0.75

Column D
Column D
Column D

F2 (3.0

0.01
0
Column D
-0.06
-0.07
-0.08
-0.14
-0.15 Column D
-0.22
-0.23 Column D
-0.29
-0.31

0
-0.24

-0.25

-0.49

-0.5

-0.51

-0.64
-0.75

Column D
Column D
Column D

-0.76
-0.76
-0.96

-1
-1

-0.75

-0.5

-0.25

0.25

0.5

0.75

F1 (95.97 %)

Objects coordinates (Expert1 / presentation by configuration):

C1
C2
C3
C4

F1
-4.557
-1.155
5.691
0.022

F2
-1.583
1.252
-0.407
0.738

F3
-0.379
0.455
0.087
-0.162

Objects coordinates (Expert2 / presentation by configuration):

C1
C2
C3
C4

F1
-2.343
-0.382
5.453
-2.728

F2
-0.697
0.786
-0.565
0.476

F3
-0.416
0.535
0.359
-0.478

Objects coordinates (Expert3 / presentation by configuration):

C1
C2
C3
C4

F1
-2.830
-1.708
6.076
-1.538

F2
-1.265
1.188
-0.756
0.833

F3
-0.470
0.936
0.310
-0.776

Objects coordinates (Expert4 / presentation by configuration):

C1
C2
C3
C4

F1
-5.114
-1.210
5.244
1.081

F2
-1.171
0.561
-0.177
0.787

F3
-0.107
0.236
0.091
-0.220

Objects coordinates (Expert5 / presentation by configuration):

C1
C2
C3
C4

F1
-3.549
-3.549
5.389
1.709

F2
-0.092
-0.092
-0.084
0.268

F3
0.148
0.148
-0.069
-0.228

Objects coordinates (Expert6 / presentation by configuration):

F1
-2.916
-3.961
5.475
1.403

C1
C2
C3
C4

F2
-0.158
0.089
-0.235
0.304

F3
0.145
0.108
-0.116
-0.137

Objects coordinates (Expert7 / presentation by configuration):

F1
-4.269
-2.740
5.491
1.517

C1
C2
C3
C4

F2
-0.985
0.899
-0.120
0.206

F3
-0.303
0.599
-0.081
-0.215

Objects coordinates (Expert8 / presentation by configuration):

F1
-3.582
-2.883
5.697
0.768

C1
C2
C3
C4

F2
-0.704
-0.180
-0.672
1.556

F3
0.200
0.712
0.406
-1.318

Objects coordinates (Expert9 / presentation by configuration):

F1
-3.566
-2.699
6.238
0.027

C1
C2
C3
C4

F2
-0.836
0.457
-0.578
0.958

F3
-0.110
0.693
0.256
-0.839

Objects coordinates (Expert10 / presentation by configuration):

F1
-4.599
-2.269
5.620
1.248

C1
C2
C3
C4

F2
-0.934
0.463
-0.239
0.711

F3
-0.106
0.501
0.104
-0.499

Objects (axes F1 and F2: 99.02 %)

10
8
6

%)

Column D
Column D
Column D
Column D

Objects (axes F1 and F2: 99.02 %)

10
8
6

Column D
Column D
Column D
Column D
Column D
Column D
Column D
Column D
Column D
Column D
Column D

F2 (3.05 %)

4
2

1.56
1.250.96
0.9 1.19
0.83
0.79
0.79
0.74
0.71
0.68
0.56
0.54
0.48
0.46
0.46
0.3
0.27
0.21
0.09
-0.09
-0.16
-0.18
-0.7
-0.7
-0.84
-0.84
-0.93
-0.98
-1.17
-1.27
-1.58

0
-2

-0.08
-0.12
-0.18
-0.24
-0.24
-0.38
-0.41
-0.57
-0.58
-0.67
-0.76

-4
-6
-8

-6

-4

-2

F1 (95.97 %)

Objects coordinates (C1 / presentation by object):

F1
C1 / Expert1 -4.557
C1 / Expert2 -2.343
C1 / Expert3 -2.830
C1 / Expert4 -5.114
C1 / Expert5 -3.549
C1 / Expert6 -2.916
C1 / Expert7 -4.269
C1 / Expert8 -3.582
C1 / Expert9 -3.566
C1 / Expert10 -4.599

F2
-1.583
-0.697
-1.265
-1.171
-0.092
-0.158
-0.985
-0.704
-0.836
-0.934

F3
-0.379
-0.416
-0.470
-0.107
0.148
0.145
-0.303
0.200
-0.110
-0.106

Objects coordinates (C2 / presentation by object):

C2 / Expert1
C2 / Expert2
C2 / Expert3
C2 / Expert4
C2 / Expert5
C2 / Expert6
C2 / Expert7
C2 / Expert8
C2 / Expert9
C2 / Expert10

F1
-1.155
-0.382
-1.708
-1.210
-3.549
-3.961
-2.740
-2.883
-2.699
-2.269

F2
1.252
0.786
1.188
0.561
-0.092
0.089
0.899
-0.180
0.457
0.463

F3
0.455
0.535
0.936
0.236
0.148
0.108
0.599
0.712
0.693
0.501

Objects coordinates (C3 / presentation by object):

C3 / Expert1
C3 / Expert2
C3 / Expert3
C3 / Expert4
C3 / Expert5
C3 / Expert6
C3 / Expert7
C3 / Expert8
C3 / Expert9
C3 / Expert10

F1
5.691
5.453
6.076
5.244
5.389
5.475
5.491
5.697
6.238
5.620

F2
-0.407
-0.565
-0.756
-0.177
-0.084
-0.235
-0.120
-0.672
-0.578
-0.239

F3
0.087
0.359
0.310
0.091
-0.069
-0.116
-0.081
0.406
0.256
0.104

Objects coordinates (C4 / presentation by object):

F1
C4 / Expert1
0.022
C4 / Expert2 -2.728
C4 / Expert3 -1.538
C4 / Expert4
1.081
C4 / Expert5
1.709
C4 / Expert6
1.403
C4 / Expert7
1.517
C4 / Expert8
0.768
C4 / Expert9
0.027
C4 / Expert10 1.248

F2
0.738
0.476
0.833
0.787
0.268
0.304
0.206
1.556
0.958
0.711

F3
-0.162
-0.478
-0.776
-0.220
-0.228
-0.137
-0.215
-1.318
-0.839
-0.499

Objects (axes F1 and F2: 99.02 %)

6.4
4.8
3.2

F2 (3.05 %)

1.6

1.56
1.25
1.19
0.960.79
0.9 0.83 0.79
0.680.71
0.540.56 0.74
0.48
0.46
0.46
0.3
0.27
0.21
0.09
-0.09
-0.16
-0.18
-0.7
-0.7
-0.84
-0.84
-0.93
-0.98
-1.17
-1.27
-1.58

0
-1.6

-0.08
-0.12
-0.18
-0.24
-0.24
-0.38
-0.41
-0.57
-0.58
-0.67
-0.76

-3.2
-4.8
-6.4
-8
-8

-6.4

-4.8

-3.2

-1.6

F1 (95.97 %)

1.6

3.2

4.8

6.4

Column D
Column D
Column D
Column D
Column D

4 rows and 30 columns

$11 / 10 rows and 1 column

ows and 1 column

stogram (F2 / 500 permutations)

Histogram (F3 / 500 permutations)

120

100

Frequency

80

60

40

20

12.6
3.63.6
0.6
10

15

20

25

30

31.6
22.6
22.6
19.6

0
35

10

15

20

25

30

35

40