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Article history: The pathogenesis of age-related macular degeneration (AMD) is thought to be determined by an array of
Received 12 May 2009 environmental and genetic factors. The association of increased expression of vascular endothelial growth
and in revised form 7 September 2009 factor (VEGF) with AMD, especially the wet form of AMD, was reported in several studies. The VEGF gene is
Available online 15 September 2009
highly polymorphic and some of its polymorphisms may affect its expression. In our work, we searched for
an association between the −460CN (rs833061) and −634GNC (rs2010963) polymorphisms of the VEGF
Keywords:
Age-related macular degeneration
gene and the occurrence of AMD and its dry and wet forms. We have chosen these polymorphisms because
AMD they were shown to be significant in other studies and we previously showed their association with diabetic
Vascular endothelial growth factor retinopathy. A total of 401 individuals were enrolled in this study: 136 controls, and 88 patients with dry and
VEGF 177 with wet AMD. The polymorphisms were determined with DNA from peripheral blood lymphocytes by
Gene polymorphism allele-specific and restriction fragment length polymorphism polymerase chain reaction. The significance of
the polymorphisms was assessed by multiple logistic regression, producing odds ratios (ORs) and 95%
confidence intervals (CIs). We observed a weak association (OR 2.90) between AMD occurrence and the C/T
genotype of the −460CNT polymorphism. An association (OR 3.77) between the C/T genotype of the
−460CNT polymorphism and the occurrence of dry AMD was observed. The T/T genotype considerably
lowered the risk of dry AMD (OR 0.19). Dry AMD was associated with the C/C genotype of the −634GNC
polymorphism (OR 3.68). Another weak association (OR 2.63) was found between the C/T genotype of the
−460CNT polymorphism and the occurrence of wet AMD. The occurrence of AMD was correlated with the
presence of the combined C/T–G/G genotype of both polymorphisms (OR 2.41), whereas the T/T–G/G and
T/T–G/C genotypes exerted a protective effect against the disease (OR 0.22 and 0.48, respectively). The
presence of the C/T–G/G and C/T–C/C combined genotypes increased the risk of dry AMD (OR 2.08 and 3.77,
respectively), whereas the presence of the T/T–G/G and T/T–G/C genotypes decreased the risk (OR 0.15 and
0.28, respectively). In the wet form of AMD, the combined genotype C/T–G/G slightly favored the disease
(OR 2.61) and the T/T–G/G genotype had a protective effect (OR 0.25). Analysis of haplotypes of both
polymorphisms yielded similar results for AMD in general as well as for the dry and wet forms of the disease:
the CG haplotype favored both forms of AMD, whereas the TG haplotype protected against both forms of
AMD. The results obtained indicate that the −460CNT and −634GNC polymorphisms of the VEGF gene may
be associated with the dry and wet forms of AMD in a Polish population.
© 2009 Elsevier Inc. All rights reserved.
Introduction developing AMD (Friedman et al., 2004). Generally, two types of AMD
can be considered: dry (non-exudative), which is the most common
Although age-related macular degeneration (AMD) might take a form, and wet (exudative). In the dry form, there is progressive
long time to develop, the onset of symptoms, including loss of vision, atrophy of the retinal pigment epithelium (RPE), with subsequent loss
often occurs suddenly . Nowadays, AMD is the leading cause of of the choriocapillaris and photoreceptors within the macula. Patients
blindness in individuals older than 55 years in developed countries with dry AMD experience a slow, progressive and inexorable decline
(Montezuma et al., 2007). In 2004, 1.75 million people in the United in central vision, whereas patients with the wet form suffer from
States were affected by AMD and 7 million people were at risk of sudden loss of vision from either bleeding or fluid leakage from
abnormal vessels originating from the choriocapillaris beneath the
RPE and macula (Lopez et al., 1996). No remedy is known for dry
⁎ Corresponding author. Fax: +4842 635 44 84. AMD; its wet form is treated to prevent the loss of vision or,
E-mail address: januszb@biol.uni.lodz.pl (J. Blasiak). eventually, its restoration, but with modest success.
0014-4800/$ – see front matter © 2009 Elsevier Inc. All rights reserved.
doi:10.1016/j.yexmp.2009.09.005
K. Janik-Papis et al. / Experimental and Molecular Pathology 87 (2009) 234–238 235
Fig. 1. Genotypes of the −460CNT polymorphism in the promoter region of the VEGF gene determined by allele-specific PCR detection and analyzed by 3% agarose gel
electrophoresis, stained with ethidium bromide and viewed under UV light. Lane M displays ΦX 174/BsuRI molecular weight marker; lanes marked by C and T show the results of
amplification with primers specific to the C and T alleles, respectively. Genotypes of patients numbered 1–4 are indicated in the lower part of the picture.
236 K. Janik-Papis et al. / Experimental and Molecular Pathology 87 (2009) 234–238
Fig. 2. Genotypes of the −634GNC polymorphism in the 5′ untranslated region of the VEGF gene determined by PCR-based BsmFI restriction fragment length polymorphism and
analyzed by 12% polyacrylamide gel electrophoresis, stained with ethidium bromide and viewed under UV light. Lane M displays ΦX 174/BsuRI molecular weight marker; all
remaining lanes present genotypes of the indicated polymorphisms.
DNA preparation polymerase (Epicentre, Madison, WI, USA) in 1× PCR buffer (100 mM
Tris–HCl, pH 8.3, 500 mM KCl, 15 mM MgCl2, 0.1% gelatin); 7 μl of
Peripheral blood lymphocytes (PBLs) were isolated by centrifuga- 25 mM MgCl2; 4.2 μl of 2.5 mM dNTPs; and 1.4 μl (20 μM) of each
tion in a density gradient of Histopaque-1077 (15 min, 280 × g). The primer. Thermal cycling conditions were as follows: initial denatur-
pellet containing the PBLs was resuspended in Tris–EDTA buffer, pH 8, ation step at 95 °C for 5 min, 30 cycles at 95 °C for 45 sec, 1 min at 50 °C
to yield about 1–3 × 105 cells/ml. Genomic DNA was extracted from annealing temperature, and 1 min at 72 °C . The final extension step
the PBLs by phenol/chloroform extraction and proteinase K digestion. was performed at 72 °C for 5 min. We used the following primers:
The final samples were kept in Tris–EDTA buffer, pH 8, at − 20 °C until sense 5′-GGCGCTCGGTGCTGGAATTT -3′, antisense 5′-AGCTAGCA-
use. CTTCTCGCGGCT-3 (POLGEN, Lodz, Poland). The 634 bp PCR product
was digested 3 hours with 2 U of the restriction enzyme BsmFI
Determination of the VEGF genotype (Fermentas, Vilnius, Lithuania). The G allele was digested into 449,
344, 291, 187, and 158 bp fragments, whereas the C variant was
Allele-specific polymerase chain reaction (PCR) was applied to digested into fragments of 635, 449, 158, and 187 bp. Digested
determine the genotypes of the −460CNT polymorphism; restriction products were separated onto a 12% polyacrylamide gel. A photograph
fragment length polymorphism PCR was performed to reveal the of a representative gel for this polymorphism is presented in Fig. 2.
genotypes of the −634GNC polymorphism. All PCR reactions were
carried out in an MJ Research, INC thermal cycler, model PTC-100 Statistical analysis
(Waltham, MA, USA).
To determine the genotype of the −460CNT polymorphism, we The allelic frequencies were estimated by gene counting and the
used 25 μl of a PCR mixture that contained 10 ng genomic DNA; 1 U genotypes were scored. The χ2 analysis was used to compare the
MasterAmp™ Taq polymerase (Epicentre, Madison, WI, USA) in 1× observed number of genotypes with that expected for a population in
PCR buffer (100 mM Tris–HCl, pH 8.3, 500 mM KCl, 0.1% gelatin); 4 μl of a Hardy–Weinberg equilibrium. The χ2 analysis was also used to test
25 mM MgCl2, 3 μl of 2.5 mM dNTPs, and 1 μl (20 μM) of each primer. the significance of the differences of observed alleles and genotypes
Thermal cycling conditions were as follows: initial denaturation step between groups. A logistic regression model was used to calculate the
at 95 °C for 5 min, 30 cycles at 95 °C for 30 sec, 45 sec at 62 °C annealing odds ratios (ORs) and 95% confidence intervals (CIs). Analyses were
temperature and 45 sec at 72 °C. The following primers were used: performed with STATISTICA 6.0 software (Statsoft, Tulsa, OK, USA).
allele-specific sense oligonucleotides 5′-TGCGTGTGGGGTTGAGGGC-
3′ for C variant and 5′-TGCGTGTGGGGTTGAGGGT-3′ for T variant and Results
reverse primer 5′-CCCGCCGCAATGAAGGGGA-3′. The PCR products
were separated onto a 3% agarose gel. Fig. 1 presents a representative The patients were divided into three groups according to
gel obtained after genotyping of this polymorphism. genotypes of the −460CNT polymorphism of the VEGF gene promoter
To determine the −634GNC polymorphism, we used 35 μl of a PCR (C/C, C/T, and T/T) and the 3 genotypes of the other polymorphism of
mixture that contained 10 ng genomic DNA; 1.5 U MasterAmp™ Taq this gene, −634GNC (G/G, G/C, and C/C). The distributions of these
Table 2 Table 3
Distribution of genotypes, frequency of alleles of the −460CNT and −634GNC Distribution of genotypes, frequency of alleles of the −460CNT and −634GNC
polymorphisms of the VEGF gene and odds ratio (OR) with 95% confidence interval polymorphisms of the VEGF gene and odds ratio (OR) with 95% confidence interval
(95% CI) in patients with age-related macular degeneration (AMD) and individuals (95% CI) in patients with dry age-related macular degeneration (AMD) and individuals
without visual disturbances (controls). without visual disturbances (controls).
Genotype Controls (n = 134) AMD (n = 265) OR (95% CI) Genotype Controls (n = 134) Dry AMD (n = 88) OR (95% CI)
or allele or allele
Number Frequency Number Frequency Number Frequency Number Frequency
−460CNT −460CNT
C/C 11 0.08 26 0.10 1.22 (0.58–2.54) C/C 11 0.08 8 0.09 1.13 (0.44–2.94)
C/T 63 0.47 191 0.72 2.90 (1.89–4.48) C/T 63 0.47 67 0.76 3.77 (2.06–6.9)
T/T 60 0.45 48 0.18 0.86 (0.46–1.58) T/T 60 0.45 13 0.15 0.19 (0.10–0.40)
C 85 0.32 243 0.46 1.82 (1.34–2.48) C 85 0.32 83 0.47 1.92 (1.30–2.84)
T 183 0.68 287 0.54 0.55 (0.40–0.75) T 183 0.68 93 0.53 0.52 (0.35–0.78)
−634GNC −634GNC
G/G 85 0.63 164 0.62 0.93 (0.61–1.44) G/G 85 0.63 47 0.53 0.66 (0.38–1.14)
G/C 44 0.33 84 0.32 0.94 (0.61–1.48) G/C 44 0.33 30 0.34 1.05 (0.60–1.87)
C/C 5 0.04 17 0.06 1.76 (0.64–4.90) C/C 5 0.04 11 0.13 3.68 (1.23–11.0)
G 214 0.80 412 0.22 0.88 (0.61–1.27) G 214 0.80 124 0.7 0.60 (0.39–0.93)
C 54 0.20 118 0.78 1.14 (0.79–1.63) C 54 0.20 52 0.3 1.66 (1.07–2.58)
Table 4 disease: the CG haplotype favored both forms of AMD, whereas the TG
Distribution of genotypes, frequency of alleles of the −460CNT polymorphism of the haplotype protected against both forms (Table 6).
VEGF gene and odds ratio (OR) with 95% confidence interval (95% CI) in patients
with wet age-related macular degeneration (AMD) and individuals without visual
disturbances (controls). Discussion
Table 5
Distribution of haplotypes of the −460CNT and −634GNC polymorphisms of the VEGF gene and odds ratio (OR) with 95% confidence interval (95% CI) in patients with dry or wet age-
related macular degeneration (AMD) and individuals without visual disturbances (controls).
Haplotype Controls (n = 134) AMD (n = 265) OR (95% CI) Dry AMD (n = 88) OR (95% CI) Wet AMD (n = 177) OR (95% CI)
C/C–G/G 7 (0.05) 17 (0.07) 1.24 (0.50–3.08) 4 (0.05) 0.86 (0.25–3.04) 13 (0.07) 1.44 (0.59–3.71)
C/C–G/C 4 (0.03) 9 (0.04) 1.14 (0.35–3.78) 4 (0.05) 1.55 (0.38–6.36) 5 (0.03) 0.94 (0.25–3.59)
C/C–C/C 0 0 – 0 – 0 –
C/T–G/G 35 (0.26) 122 (0.48) 2.41 (1.53–3.80) 37 (0.42) 2.05 (1.16–3.64) 85 (0.48) 2.61 (1.61–4.25)
C/T–G/C 25 (0.19) 60 (0.23) 1.28 (0.76–2.15) 23 (0.26) 1.54 (0.81–2.94) 37 (0.21) 1.15 (0.65–2.03)
C/T–C/C 3 (0.02) 9 (0.04) 1.54 (0.41–5.77) 79 (0.08) 3.77 (0.95–15.0) 2 (0.01) 0.50 (0.08–3.03)
T/T–G/G 43 (0.32) 25 (0.10) 0.22 (0.13–0.38) 6 (0.07) 0.15 (0.06–0.38) 19 (0.11) 0.25 (0.14–0.46)
T/T–G/C 15 (0.11) 15 (0.06) 0.48 (0.23–1.01) 3 (0.03) 0.28 (0.08–1.00) 12 (0.07) 0.58 (0.26–1.28)
T/T–C/C 2 8 (0.03) 2.05 (0.43–9.81) 4 (0.05) 3.14 (0.56–17.5) 4 (0.02) 1.53 (0.28–8.46)
“ – ” not estimated.
238 K. Janik-Papis et al. / Experimental and Molecular Pathology 87 (2009) 234–238
Table 6
Distribution of haplotypes of the −460CNT and −634GNC polymorphisms of the VEGF gene and odds ratio (OR) with 95% confidence interval (95% CI) in patients with wet or dry age-
related macular degeneration (AMD) and individuals without visual disturbances (controls).
Haplotype Controls (n = 134) AMD (n = 265) OR (95% CI) Dry AMD (n = 88) OR (95% CI) Wet AMD (n = 177) OR (95% CI)
CG 131 (0.24) 390 (36.8) 1.80 (1.43–2.27) 121 (0.34) 1.62 (1.21–2.18) 269 (0.38) 1.89 (1.48–2.43)
CC 33 (0.06) 78 (7.4) 1.21 (0.79–1.84) 31 (0.09) 1.47 (0.88–2.45) 47 (0.07) 1.08 (0.68–1.72)
TG 297 (0.56) 434 (40.9) 0.56 (0.45–0.69) 127 (0.36) 0.45 (0.34–0.60) 307 (0.43) 0.62 (0.49–0.77)
TC 75 (0.14) 158 (14.9) 1.08 (0.80–1.45) 73 (0.21) 1.61 (1.13–2.29) 85 (0.12) 0.84 (0.60–1.17)
of genetic variability of the VEGF gene in the pathogenesis of AMD gene and risk of age-related macular degeneration. The Rotterdam Study.
Ophthalmology 115, 1899–1903.
should be continued. Churchill, A.J., et al., 2006. VEGF polymorphisms are associated with neovascular age-
related macular degeneration. Hum. Mol. Genet. 15, 2955–2961.
Conclusion Ding, X., Patel, M., Chan, C.-C., 2009. Molecular pathology of age-related macular
degeneration. Prog. Retin. Eye Res. 28, 1–18.
Ferrara, N., 2004. Vascular endothelial growth factor: basic science and clinical
The C/T genotype of the −460CNT polymorphism of the VEGF gene progress. Endocr. Rev. 25, 581–611.
may be associated with enhanced risk of dry and wet AMD in the Friedman, D.S., et al., 2004. Prevalence of age-related macular degeneration in the
United States. Arch. Ophthalmol. 122, 564–572.
Polish population, whereas the T/T genotype may reduce the risk of Haines, J.L., et al., 2006. Functional candidate genes in age-related macular
the dry form of this disease. Dry AMD may be associated with the C/C degeneration: significant association with VEGF, VLDLR, and LRP6. Invest.
genotype of another polymorphism of the VEGF gene, −634GNC. Both Ophthalmol. Vis. Sci. 47, 329–335.
Houck, K.A., et al., 1991. The vascular endothelial growth factor family: identification of
polymorphisms may interact, producing haplotypes that modulate
a fourth molecular species and characterization of alternative splicing of RNA. Mol.
the risk of AMD. Endocrinol. 5, 1806–1814.
Jager, R.D., Mieler, W.F., Miller, J.W., 2008. Age-related macular degeneration. N. Engl. J.
Conflict of interest statement Med 358, 2606–2617.
The authors declare that there are no conflicts of interest. Lopez, P.F., et al., 1996. Transdifferentiated retinal pigment epithelial cells are
immunoreactive for vascular endothelial growth factor in surgically excised age-
related macular degeneration-related choroidal neovascular membranes. Invest.
Acknowledgment
Ophthalmol. Vis. Sci. 37, 855–868.
Montezuma, S.R., Sobrin, L., Seddon, J.M., 2007. Review of genetics in age related
This work was supported by the Ministry of Science and Higher macular degeneration. Semin. Ophthalmol. 22, 229–240.
Penn, J.S., et al., 2008. Vascular endothelial growth factor in eye disease. Prog. Retin. Eye
Education, grant number 402 071 32/2210.
Res. 27, 331–371.
Richardson, A.J., et al., 2007. A tag-single nucleotide polymorphisms approach to the
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