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Oscillatory Phenomena in Biochemistry
Oscillatory Phenomena in Biochemistry
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CONTENTS
Annu. Rev. Biochem. 1971.40:237-258. Downloaded from www.annualreviews.org
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INTRODUCTION. . ..... ............. . .......... ...... .... .. ... ... ....... 237
SOLUBLE OSCILLATORS.. ...... ....... . . . ..... .... . .. .. .. .. .. ...... ..... 239
Enzymes. . . . ... .......... ........ . . ................... ... .........
. 239
Glycolysis in yeast extracts. . . . . . . ... ... ....... .. .. . . ........ .. .... . ... 240
Oscillating glycolys1,s in other systems. . .... . ....... . ............. . .. . ..
. 243
MITOCHONDRIAL SYSTEMS.. ........................... . . ............... 243
CELLULAR SYSTEMS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . " 247
Metabolic oscillations. . .. ... . ... . . . ... . ....... . ................... . ... 247
Epigenetic oscillations. . . ......... . ... . .. . ............. .. . ............ 248
Endogenous oscillations. . .. . ........ ... . .... ... . .... .. ..... .. ......... 249
�Muscular contraction.. ............... ................................ 249
Periodic membrane transport. . . . .............. ...... ......... ...... . .. 249
MODELS AND THEORIES. .. . ... .. .. .. . . ... . ... .. .... . .. ...
. . . . . . . . . . • • • . 250
Chemical models. .... ..... ..... .. .. ...... .. .........................
. 250
Specific mathematical models. . . ........ ..... .. .. .. . ..... .. .. .......... 251
General mathematical models. .. . ... .. . ...... ... ... . .......... .... ...... 251
CONCLUSIONS AND OUTLOOK. . .. . . ... . .... ...... .... .......... .. ..... . .. 252
DEFINITIONS. . . . . . . . . . . . . . . . . . . . . . . . . . . .. . . . . . . .. . . . . . . . . . . . . . . . . . . .. 254
INTRODUCTION
field, and does not represent all the opinions of other investigators. The area of
electrogenic and neural oscillations is not discussed. The survey of the literature
for this review was concluded in October 1970.
237
238 HESS & BOITEUX
SOLUBLE OSCILLATORS
Enzymes.-The first clear oscillatory reaction in a soluble enzyme sys
tem was observed in an open system of horseradish peroxidase and lactoper
oxidase in the presence of a reductant and oxygen. The horseradish peroxi
dase system oxidizing both pyridine nucleotides (32-34) and indoleacetate
or dihydroxyfumarate (35,36) oscillated with a rather limited stable range
between ferriperoxidase and compound III in phase with the oxygen con
sumption. Oscillations were favored by an acid pH (33). Chemilumines
cence oscillations were also observed (35). With la ct operoxidase at neutral
pH in presence of NADPH and oxygen,stable oscillations between the fer
ric state and compound III over more than 50 cycles were observed, with
frequencies of approximately 0.2 min-1 and amplitudes of approximately 0.5
extinction units at 418 nm (see 31 ) . The system was fortified with glucose
6-phosphate dehydrogenase and glucose-6-P to foster NADPH regenera
tion, 2,4-dichlorophenol to stimulate the pyridine nucleotide oxidation rate,
and methylene blue to accelerate the decomposition rate of compound III.
The system involved at least 10 reaction steps, including the peroxidase cy
cle and a chain reaction coupling the oxygen uptake to the formation of
compound III (33). On the basis of the differential response of compound
III to the addition of various donors such as NADH, indoleacetate, and
dihydroxyfumarate, a direct function of compound III as a regulatory com
ponent in the oscillation circuit has been questioned (35, 37). The system
has a clear feedback structure and displays oscillation and bistability (36)
if a steady state is induced by generating a steady donor and oxygen supply.
On the basis of an autocatalytic mechanism, the experimental observations
can be fitted to the Lotka model (37).
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Annu. Rev. Biochem. 1971.40:237-258. Downloaded from www.annualreviews.org
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FIGURE 1. P hase shift of osciI1ating glycolytic intermediates. The amplitude of
the concentrations is normalized (31, 42).
·
90 GAPDH/PGK
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with the balance of the adenosine phosphate system cause variations of am
plitude, frequency, or waveform of the oscillations. In particular the adeno
sine nucleotides exert strong direct control upon the phase position of the
components of the oscillating system (43, 47, 48). In addition, the action of
glycolytic inhibitors such as iodoacetate, fluoride, or substrate analogs like
deoxyglucose support this mechanism (21, 52).
The basic feature of this mechanism is the assignment to specific en
zymes of a definite control function responsible for the oscillatory dynamic
of the whole process. Detailed investigation of the activities and dynamic
properties of the glycolytic enzymes under conditions of oscil1ation demon
strates a mean activity in the range of 2-30% of their respec tive maximal
en zyme activity (42). In particular, phosphofructokinase changes its activ
ity at least by a factor of 80-90 during one oscillatory period (42). Fur
thermore the enzymes, which exhibit dynamic control, also show allosteric
properties: phosphofructokinase (42, 43, 53), glyceraldehyde-3-P dehydrog
enase (54), pyruvate kinase (55), and pyruvate decarboxylase (56). In
deed, these enzymes provide a structure with inherent dynamic kinetics
OSCILLATORY PHENOMENA IN BIOCHEMISTRY 243
which can readily produce instabilities or, coupled within the feedback
structure of the glycolytic system, oscillations of the glycolytic flux.
Additional evidence for the validity of the mechanism of glycolytic oscil
lations is presented by reconstruction experiments which demonstrated that
glycolytic oscillations are due only to the essential components of the glyco
lytic system (40, 41). In these experiments, oscillations of square wave
character as well as a spikelike waveform with a rise time of less than 1.5
sec and approximately 1 min intervals have been recorded (41).
In summary, glycolytic oscillations are generated by feedback activation
and inhibition of the allosteric oscillophor phosphofructokinase coupled by
the adenosine phosphates to the other kinases and the ATP-consuming sys
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MITOCHONDRIAL SYSTEMS
At the 1965 FASEB meetings two reports (25, 26) described a new phe
nomenon: oscillations of light scattering and ion .fluxes in suspensions of
mitochondria. The oscillations were induced in both cases by adding iono
phoretic antibiotics. Valinomycin ( 63-65) was used to activate the potas-
244 HESS & BOITEUX
agents such as EDTA or citrate act oppositely (73, 74). Thus, enhanced
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technique (83, 84). The mitochondrial matrix space can increase during os
cillations by some 40% due to ion translocation and osmosis (82).
Concomitant with the oscillatory ion movements and volume changes of
mitochondria, periodic variations of the redox state of respiratory carriers
can be recorded. Oxidation-reduction cycles of pyridine nucleotides (28, 72,
77), flavoproteins (28, 85), and cytochromes (28, 85, 86) have been rc
ported as well as changes in the rate of oxygen uptake (25, 72, 77). Under
reduced oxygen tension an oscillating respiration rate has been demon
strated directly (87).
The multiplicity of oscillating parameters complicated an investigation
of the basic mechanism of mitochondrial oscillations. All parameters ana
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lyzed so far oscillate with the same frequency, but with distinct phase shifts
relative to each other (d Figure 3). Additions of ADP and ATP to sub
strate-fed oscillating mitochondria shift the whole set of parameters to the
positions indicated, clearly demonstrating control functions of the energy
coupling mechanism. A crossover point between flavoproteins and cyto
chrome b reveals a cyclic change between energy and substrate control dur
ing oscillations (28, 85). Indeed, substrate control by competitive anion
transport, together with energy-dependent transport of the respective ca
tioH, is in accord with the requirements for the generation of oscillations as
outlined above. Interesting speculations have been presented on the general
aspect of metabolic control by energy-dependent cation transport (88).
Further information on the mechanism of oscillation is given by titration
with ions. These experiments reveal a strong positive feedback control of
hydrogen and potassium ions on the oscillating system (cf Figure 3). Addi
tion of either of these ions to the suspension medium results in a phase shift
of all oscillating parameters to the indicated positions and additional ejection
of the titrated ion from the mitochondrial matrix space. The lowest effective
concentration of either ion is in the range of its oscillatory amplitude. Thus,
mitochondrial oscillations are controlled by positive feedback coupling of
ion fluxes to the respiratory system, and pH and pK differentials are identi
fied as synchronizers for the synchronous oscillations of the mitochondrial
population (28,89).
The dependency of the membrane function upon ion differentials
strongly suggests a charge-coupled structural change of the mitochondrial
inner membrane. This idea is supported by optical rotatory dispersion and
circular dichroism studies on mitochondria, indicating a correlation of vol
ume changes with changes in secondary structure of inner membrane pro
teins during oscillations (29). Furthermore the high activation energy of
19-26 kcal for a change of frequency (75,77) excludes a simple chemical re
action sequence. The dominating role of membrane properties for the mito
chondrial oscillations is stressed by the dependency of the oscillation fre
quency on the transport rate of potassium ions (28,89) and by the damping
effect of local anesthetics (90).
There has been some speculation with respect to the natme of energy
Respiration Rate
*
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::r::
t:t:1
(f]
(f]
f(;O
td
o
,....,
0--3
�
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FIGURE 3. Phase relations in mitochondrial oscillations and shift of phase angle by titrations. Outer shells: Phase
relations of volume change, ion transport, respiration rate, and redox state of cytochrome b. Central part: Phase an
gles obtained by additions of H+, OH-, K+, ADP, and ATP to oscillating mitochondria.
Following the ai)dition of the respective compound, the phase angle at the time of addition is rapidly shifted to
the indicated position, while the oscillation continues with unchanged frequency (with minor modifications from 28,
89).
OSCILLATORY PHENOMENA IN BIOCHEMISTRY 247
coupling (91) or the mode of action of uncouplers (92) on the basis of
mitochondrial oscillations. In addition to the short-period oscillations de
scribed so far, cyclic changes of mitochondrial respiration with a period of
about 30 min have been reported (93).
CELLULAR SYSTEMS
Metabolic osc illat ions. T here are a few reports on oscillating parame
-
ters in single cells that can be traced to their metabolic origin. Pyridine
nucleotide oxidation-reduction cycles with periods of - 40 sec have been
observed microspectrophotometrically in individual yeast cells (57). The
membrane potential of single muscle fibers of frog skeletal muscle oscillates
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are the results of experiments where two populations of yeast cells, oscillat
ing with different phase angles, are mixed and the resulting phase shift of
the oscillating mixture is recorded. The synchronizer, however, has not yet
been identified (50).
Triggered and spontaneous oscillations can be found in yeast cells grown
aerobically or anaerobically on different substrates and harvested in their
logarithmic or stationary growth phases (39). The oscillatory response has
been observed following continuous and discontinuous additions of mono
and polysaccharides such as glucose, fructose, sucrose, maltose, and treha
(39).
lose to the cell suspension
The amplitude of NADH oscillation accounts for a change in its cyto
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free extracts, the waveform has a clear sinusoidal character in intact cells
(20 , 39), and the frequency is somewhat higher, ranging between 1-3 min-l.
The frequency variation of the oscillation during a glucose injection ex
periment was 3 .5% over a 50 cycle range (39). The mean frequency and
damping f actor depend on t he nature and inject io n rate of the substrate.
The temperature-dependent increase of frequency between 19.50 and 400 var
ies by a factor of 4-2.2 for a 100 interval (20 , 100). There are no major
differences in the mechanism of the glycolytic oscillations in yeast cells and
yeast extracts (97-106, see also above).
nature, but at the time still poorly understood in their mechanisms. Most of
them may be coupled to a differentiation process or the life cycle of the
species.
must be considered.
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important e.g. in the timing of large systems such as the mass of the heart
muscle. Recently it has been suggested that the synchronizing function of
oscillations might well operate as a mode which adds positional information
to a cell during development and regeneration. The structure of differenti
ated tissue is the result of distinct spatial and temporal organization of the
deVeloping processes, and questions arise as to how the time is read and
how each locus within the cell mass receives information on its position.
The model suggests that the positional map is given by oscillatory propaga
tion of activity and concentration from a local clock, which can be triggered
by an outer parameter. I f that clock is triggered, a gradient of frequencies
and a pattern of phase differences can easily evolve and function as a timing
parameter in ontogenesis. This concept has been analyzed for the develop
ment and regeneration in hydra as well as for the problem of positional
projection in early amphibian life ( 173 ) .
7. Oscillations reflect an ev.oltttionary process. Cross-coupling structures
and feedback networks are emerged properties of living structures and in
herent in all dynamic phenomena in biology. If we observe oscillatory and
highly complex transients of components in intact cellular systems such as
glycolysis of yeast, they can be understood as a result of evolution yielding
kinetic optimization of a pathway. Such a process leads to a dynamic struc
ture of metabolism, which displays efficient response times and appropriate
damping rates, allowing the controlled system to react in an adapted manner
to continuously changing external conditions.
Oscillatory phenomena have been postulated as an essential part of the
evolutionary process of life, forming the basis of a space differentiation
where gradients of chemical potentials are produced by oscillating chemical
systems ( 166, 167 ) . The existence of either a steady state or a limit cycle
might bring a selective advantage and generate the evolution of the given
regulatory system ( 16 1 ) . Indeed, in a general theory of evolution it has
been pointed out that the very properties outlined above-autocatalyis and
oscillations around steady states-are the tools of evolution, which in an
254 HESS & BOITEUX
ACKNOWLEDGMENTS
DEFINITIONS
t.. =
.1mox +
--- 2-Amin
--
here t1mar. = 27rtm/r gives the phase difference of the maxima of two variables of the
same frequency : r = period, ( ± ) tm = time difference between the maxima of the two
components, t.min is the respective phase differcnce of thc minima. More detailed
analytical data can be obtained by application of the graphic phase plane procedure.
LITERATURE CITED
1. Zinn, J. G. 1 759. Hamburg. Magazin 27. Mustafa, N. E., Utsum i , R., Packer,
22 :40-50 L. 1966. Biochem. Biophys. Res.
2. Bunning, E. 1967. The Physiological Commun. 24 :381
Clock. New York : Springe r 28. B oiteux, A., Chance, B. 1970. Int.
3. Schmitt, O. II. 1959. Rev. Mod. Phys. Congr. Biochem ., 8th, Luzern.
3 1 :492 (Abstr.)
4. Aschoff, J. 1963. Ann. Rev. Physio l . 29. Wrigglesworth, J. M., Packer, L.
25 : 5 8 1 1968. Arch. Biochem. Biophys.
5 . Mil ls, J. N . 1966. Physiol. Rev. 4 6 : 128 :790
128 30. F rank, G. M., Zhaboti nskij, A . M.,
6. Halberg, F. 1 969. Ann. Rev. Physiol. Molchanof, A. M., Chernavskii,
3 1 :675 D. S., Shnolj, S. E., Eds. 1967.
7. Noble, D. 1966. P hysio l. Rev. 46 : 1 Oscillatory ProCesses in Biologi
Annu. Rev. Biochem. 1971.40:237-258. Downloaded from www.annualreviews.org
Access provided by University of Hyderabad on 08/26/22. For personal use only.
Quart. Rev. Biophys. 1 : 127 1 66. Prigogine, 1., Lefever, R., Gold
ISS. Adam, G. 1970. In Physical Princi beter, A., Herschkowitz-Kauf
ples of Biological Membranes, ed. mann, M. 1969. Nature 223 :9 1 3
F. Snell, J. Wolken, G. Iverson, 1 67. Prigogine, I. 1967. Dissipative struc
J. Lam, 35. New York : Gordon tures in chemical systems. In Fast
& B reach Reactions and Primary Processes
1 5 6. Spangler, R. A., Snell, F. M. 1 9 6 1 . in Chemical Kinetics, Nobel
Nature 1 9 1 :457 Symp., 5th, ed. S. Claesson, 3 7 1 .
1 5 7. Morales, M., McKay, D. 1967. Bio Stockholm : Almquist & Wiksell
phys. 1. 7 :621 1 68. Rubin, H., S itgreaves, R. 1954.
158. LandahI, H. D . 1969. Bull. Math. Tech. Rep. No. 19A. AppJ. Math.
Biophys. 3 1 :775 Statist. Lab., Stanford Univ.
15 9 . Seelig, F. F. 1970. 1. Theor. Bioi. 1 69. Changeux, J. P., Thiery, J. 1968.
27 :197 See Ref. 41, 1 1 8
1 60. Walter, C. F. 1969. J. Theor. Bioi. 170. Gander, J. E. 1 9 67. Ann. NY Acad.
Annu. Rev. Biochem. 1971.40:237-258. Downloaded from www.annualreviews.org