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AmpC b-lactamases and bacterial resistance:

an updated mini review


Mohammad Shahida, Farrukh Sobiaa, Anuradha Singha, Haris M. Khana,
Peter M. Hawkeyb,c, Anwar Huqd and Nancy Khardorie

Reviews in Medical Microbiology 2009, 20:41–55

Keywords: AmpC b-lactamases, antibiotic resistance, mini review

Introduction resistance in Klebsiella pneumoniae isolates from patients


in New York and these organisms produced multiple
The accumulation of bacterial antibiotic resistance is a b-lactamases, including an AmpC-type enzyme with pI
dramatic demonstration of Darwin’s dictum of the of 9.0. AmpC b-lactamases are produced by numerous
survival of the fittest, with serious practical consequence pathogens [4] and are emerging as an increasing cause of
for treatment failure. The patterns and mechanisms of resistance in Enterobacteria [5]. Interestingly, increasing
resistance undergo continuous evolution and other frequency of co-existence of blaampC with blaCTX-M has
resistances are proliferating rapidly, notably those to also been reported recently [6]. Acquisition of AmpC-
cephalosporins and quinolones among Gram-negative type genes by plasmids in Escherichia coli and K. pneumoniae
bacteria and carbapenem resistance is emerging too, has been known since the 1980s [7]. Plasmidic ampC
especially in Acinetobacter spp. For a resistance to succeed, genes are derived from the chromosomal ampC genes of
it needs to have a mechanism that imposes little fitness several (not all) members of the family Enterobacter-
burden, along with a biologically fit host strain or strains. iaceae, including Enterobacter cloacae, Citrobacter freundii,
Morganella morganii, and Hafnia alvei [4].
The principal bacterial defence mechanism is the
production of b-lactamases; enzymes which produce a
biologically inactive product by hydrolyzing the b-lactam To meet the challenge of resistance due to production of b-
ring [1]. b-Lactamases can also be described as bacterial lactamases, b-lactams with greater b-lactamase stability,
enzymes that inactivate b-lactam antibiotics by hydroly- including cephalosporins, carbapenems, and monobac-
sis, which results in ineffective compounds. To date, at tams, were introduced in the 1980s. Resistance appeared
least 400 different types of b-lactamases have been initially in organisms such as E. cloacae, C. freundii, Serratia
described (www.lahey.org). Some enteric pathogens may marcescens and Pseudomonas aeruginosa that could, by
also be cephamycin-resistant by virtue of porin mutation. mutation, overproduce their chromosomal AmpC (also
Plasmid-mediated AmpC (pMAmpC) enzymes may termed class C or group 1) b-lactamase, thus providing
confer broad resistance to all b-lactams other than resistance to both oxyimino- and 7-a-methoxy-cepha-
carbapenems and hence pose a major therapeutic losporins and monobactams [8]. Later, resistance appeared
challenge [2]. Carbapenems are active against strains that in bacterial species that lack an inducible AmpC enzyme,
harbour these enzymes, but several researchers have such as K. pneumoniae, E. coli, Salmonella spp. and Proteus
described the emergence of resistance due to a dual mirabilis, and this resistance was found to be mediated
mechanism. Bradford et al. [3] described imipenem by plasmids encoding extended-spectrum b-lactamases

a
Section of Antimicrobial Resistance Researches and Molecular Biology, Department of Microbiology, Jawaharlal Nehru Medical
College & Hospital, Aligarh Muslim University, Aligarh, Uttar Pradesh, India, bAntimicrobial Agents Research Group, Institute of
Biomedical Research, University of Birmingham, Edgbaston, cWest Midlands Health Protection Agency, Heart of England NHS
Foundation Trust, Bordesley Green East, Birmingham, UK, dMaryland Pathogen Research Institute, Bioscience Research Building,
University of Maryland, College Park, Maryland, and eDivision of Infectious Diseases, Department of Internal Medicine, Southern
Illinois University School of Medicine, Springfield, Illinois, USA.
Correspondence to Dr Mohammad Shahid, Assistant Professor & Consultant Microbiologist, Department of Microbiology,
Jawaharlal Nehru Medical College & Hospital, Aligarh Muslim University, Aligarh 202 002, Uttar Pradesh, India.
Tel: +91 571 2720382; fax: +91 571 2721776/2720382; e-mail: shahidsahar@yahoo.co.in; drmohdshahid123@yahoo.com
Received: 25 June 2009; accepted: 8 August 2009.

DOI:10.1097/MRM.0b013e328331ad83

ISSN 0954-139X Q 2009 Wolters Kluwer Health I Lippincott Williams & Wilkins 41
Copyright © Lippincott Williams & Wilkins. Unauthorized reproduction of this article is prohibited.
42 Review in Medical Microbiology 2009, Vol 20 No 3

(ESBLs), which are enzymes that arose by mutations in isoelectric point (pI) of 8.0 and was more sensitive to
TEM (named after patient Temoneira from Athens, inhibition by sulbactam than by clavulanate or tazobac-
Greece) or sulfhydryl variable (SHV) b-lactamases of tam, suggesting that it might be a class C enzyme.
more limited hydrolytic capacity [9–11]. Such resistance However, the first proof that a class C b-lactamase had
included oxyimino-cephalosporins and monobactams been captured on a plasmid was provided by Papanicolaou
but not 7-a-methoxy-cephalosporins and was blocked et al. [23], who described transmissible resistance to
by clavulanate, sulbactam or tazobactam, which are a-methoxy-b-lactam and oxyimino-b-lactam mediated
inhibitors that are generally ineffective against class C by an enzyme (MIR-1) with the biochemical properties
enzymes [8,12]. With continuing use of 7-a-methoxy- of a class 1 b-lactamase and showed that part of the MIR-1
cephalosporins (cefoxitin and cefotetan) and the clinical gene was 90% identical to the ampC gene of E. cloacae.
introduction of b-lactamase inhibitor combinations, Subsequently, plasmid-mediated class C b-lactamases
plasmids encoding class C b-lactamases appeared [13]. have been discovered worldwide; an updated information
Like their counterpart on the chromosome, such regarding the detection of AmpC types from various
enzymes provided a broader spectrum of resistance than Gram-negative bacterial species, their accession numbers
ESBLs and were not blocked by commercially available and country of origin is shown in Table 1. These
inhibitors. Furthermore, in a strain with decreased outer b-lactamases have been named with inconsistency typical
membrane permeability, such enzymes can provide of b-lactamase nomenclature according to the resistance
resistance to carbapenems as well, as has been observed produced to cephamycins (CMY), cefoxitin (FOX) and
with clinical isolates of K. pneumoniae during an out- moxalactam (MOX) or latamoxef (LAT), to the type of
break in New York [3] and in individual isolates of b-lactamase, such as AmpC type (ACT) or Ambler class C
E. coli in the United Kingdom [14] and K. pneumoniae in (ACC), and to the site of discovery, such as the Miriam
Sweden [15]. Hospital in Providence, Rhode Island, USA (MIR-1) or
Dhahran Hospital in Saudi Arabia (DHA). BIL-1 was
characterized and even named after the patient (Bilal)
who provided the original sample [24] (for detailed
descriptions readers are encouraged to read [25]).
History and chronology of AmpC
b-lactamases Bou et al. [26] analyzed the nucleic acid sequence and
reported a new ampC b-lactamase gene that was closely
b-Lactamases, demonstrated or presumed to be chro- related to those encoding FOX-1, FOX-2, and FOX-3
mosomally mediated, have been described in Acinetobacter b-lactamases, but its product had four novel amino acid
spp., Aeromonas spp., Chromobacterium violaceum, C. mutations at position 11 (M!T), 43 (A!E), 233
freundii, Enterobacter spp., E. coli, H. alvei, Lysobacter (V!A), and 280 (Y!H). They designated this product as
lactamgenus, M. morganii, Ochrobactrum anthropi, Proteus FOX-4. In 2003, Nakano et al. [27] described a novel
rettgeri, Providencia stuartii, Pseudomonas aeruginosa, Psy- plasmid-encoded ampC-type b-lactamase, CFE-1, with
chrobacter immobilis, Rhodobacter sphaeroides, S. marcescens, an ampR gene derived from C. freundii. DNA sequence
and Yersinia enterocolitica. In Shigella flexneri and Shigella analysis also identified a gene upstream of ampC whose
dysenteriae, ampC is included in a large deletion [16]. An sequence was 99% identical to ampR gene from C. freundii
ampC locus appears on the genetic map of Salmonella GC3. In addition, a fumarate operon (frd ABCD) and an
[17], but the evidence for its existence was indirect and its outer membrane lipoprotein (blc) surrounding the ampR-
presence has not been confirmed in the sequenced ampC genes in C. freundii were identified and insertion
genomes of Salmonella enterica serotypes Typhimurium or sequence (IS26) elements were observed on both sides of
Paratyphi [18], so that Salmonella is considered to be sequence identified (forming an IS26 composite trans-
AmpC [13]. A chromosomal ampC gene is also lacking poson) [27]. They concluded that these results confirmed
in Klebsiella spp. and P. mirabilis [18]. Bobrowski et al. [19] the evidence of translocation of a b-lactamase-associated
described a plasmid-mediated b-lactamase indistinguish- gene region from chromosome to plasmid. Doi et al. [28]
able from the AmpC enzyme of E. coli in a strain of P. characterized a novel plasmid-mediated cephalosporinase
mirabilis and Levesque et al. [20] reported a plasmid- CMY-9 and revealed its genetic environment in an
mediated cephalosporinase in Achromobacter spp. In 1983, E. coli clinical isolate. After determining the amino acid
Knothe et al. [21] reported the transfer of cefoxitin sequence, it was found that CMY-9 had a single amino
resistance from S. marcescens to Proteus or Salmonella spp., acid substitution (E 85 D), the residue reported to be part
but resistance segregated on transfer to E. coli and no of the recognition site for R1 side chain of b-lactams,
biochemical or molecular studies were done [21]. In compared with amino acid sequence of CMY-8 and also
1989, Bauernfeind et al. [22] described a K. pneumoniae had 78% identity with the amino acid sequence of Cep H
isolate from South Korea that could transfer resistance to (chromosomal cephalosporinase of Aeromonas hydrophi-
cefoxitin and cefotetan as well as to penicillins, oxyimino- lia). In the same year, Hujer et al. [29] identified a new
cephalosporins and monobactams to E. coli. The enzyme, allelic variant of Acinetobacter baumanii cephalosporinase,
termed CMY-1 for its cephamycinase activity, had an ADC-7 b-lactamase. The amino acid composition of this

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AmpC b-lactamases – an update Shahid et al. 43

Table 1. Various chromosomal and plasmid-mediated AmpC b-lactamases reported in various Gram-negative organisms, their year and country of origin,
and accession numbers analyzed in the present review.

Organisms/ Accession Year reported Country of origin Chromosomal/


AmpC variants numbers (in chronological order) (based on GenBank data) plasmid-mediated

Escherichia coli
BIL-1 X74512 1993 United Kingdom (Pakistan) Plasmid
FOX-2 Y10282 1996 Germany (Guatemala) Plasmid
LAT-3 Y15411 1997 Greece Plasmid
LAT-4 Y15412 1997 Greece Plasmid
CMY-3 Y16783 1998 Plasmid
CMY-4 AJ007826 1998 United Kingdom Plasmid
CMY-7 AJ011291 1998 India Plasmid
CMY-6 AJ011293 1998 India Plasmid
FOX-4 AJ277535 2000 Spain Plasmid
CMY-9 AB061794 2001 Japan Plasmid
CMY-11 AF381626 2001 Korea Plasmid
CMY-13 AY339625 2003 Greece Plasmid
CMY-18 AY743434 2004 Korea Plasmid
CMY-21 DQ139328 2005 United Kingdom Plasmid
CMY-22 DQ256079 2005 China Plasmid
CMY-23 DQ438952 2006 United Kingdom Plasmid
CMY-24 EF415650 2007 Singapore Plasmid
CMY-28 EF561644 2007 Ireland Plasmid
CMY-29 EF685371 2007 New Zealand Plasmid
CMY-30 EF536872 2007 New Zealand Plasmid
CMY-32 EU496815 2008 United States Plasmid
CMY-33 EU496816 2008 United States Plasmid
DHA-1 2008 India Plasmid
Klebsiella pneumoniae
MOX-1 D13304 1992 Japan Plasmid
MIR-1 M37839 1993 United States Plasmid
FOX-1 X77455 1994 Argentina Plasmid
LAT-1 X78117 1994 Greece Plasmid
CMY-2 X91840 1995 Greece Plasmid
CMY-1 X92508 1995 South Korea Plasmid
ACT-1 U58495 1996 United States Plasmid
LAT-2 S83226 1996 Greece Plasmid
CMY-8 AF167990 1999 Taiwan Plasmid
MOX-2 AJ276453 2000 France (Greece) Plasmid
DHA-2 AF259520 2000 France Plasmid
FOX-6 AY034848 2001 United States Plasmid
CMY-10 AF381618 2001 Korea Plasmid
DHA-3 AY494945 2003 Taiwan Plasmid
FOX-7 AJ703795 2004 Italy Plasmid
CMY-19 AB194410 2004 Japan Plasmid
FOX-5 AY007369 2005 United States Plasmid
CMY-31 EF622224 2007 Switzerland Plasmid
Klebsiella oxytoca
FOX-3 Y11068 1997 Italy Plasmid
CMY-5 Y17716 1998 Sweden Plasmid
CMY-26 AB300358 2007 Japan Plasmid
Enterobacter cloacae
MHN1 X08082 1988 Chromosomal
GC1 D44479 1994 Japan Chromosomal
K992004.1 AF411144 2001 Korea Chromosomal
K995120.1 AF411145 2001 Korea Chromosomal
K99230 AF411146 2001 Korea Chromosomal
K9911729 AF411147 2001 Korea Chromosomal
K9973 AF411148 2001 Korea Chromosomal
K9914325 AF411149 2001 Korea Chromosomal
Salmonella enteridis
DHA-1 AJ237702 1999 France Plasmid
Proteus mirabilis
CMY-12 Y16785 1998 France Plasmid
CMY-14 AJ555825 2003 Poland Plasmid
CMY-16 AJ781421 2004 Italy Plasmid
Aeromonas sobria
AER14 ASU10251 1994 United States Chromosomal
CEPS X80277 1994 United Kingdom Chromosomal
Serratia marcescens
SRT-1 AB008454 1997 Japan Chromosomal
SST-1 AB008455 1997 Japan Chromosomal
Hafnia alvei
ACC-1 AJ270941 2000 France (Saudi Arabia) Plasmid
ACC-2 AF180952 1999 France Plasmid
ACC-3 AF180958 1999 France Plasmid
ACC-4 EF504260 2007 Greece Plasmid

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44 Review in Medical Microbiology 2009, Vol 20 No 3

enzyme did not match with known class C b-lactamases penicillins, such as ampicillin, and by cephalosporins [35].
and hence they proposed a uniform designation for this Because of their location on the host chromosome, ampC
family of cephalosporinases, ADC (Acinetobacter-derived genes were not initially subjected to the rapid dissemina-
cephalosporinase) and identified enzyme as ADC-7 [29]. tion allowed by the horizontal transmission of plasmid-
In 2006, Wachino et al. [30] suggested that the genetic borne genes. A survey of 20 US hospitals showed that
environment of bla CMY-19 was identical to that of bla plasmid-borne ampC genes were more prevalent than
CMY-9 and a single amino acid substitution, I 292 S, TEM-type ESBL genes, although they were less common
adjacent to the H-10 helix region was observed between than SHV-type ESBLs (G.A. Jacoby, P. Han, M. Alvarez,
CMY-9 and CMY-19. This substitution was suggested to and F. Tenover, Program Abstract of the 35th Interscience
be responsible for the expansion of hydrolyzing activity Conference on Antimicrobial Agents and Chemotherapy,
against several broad-spectrum cephalosporins. The abstract C49, 1995).
chronology of discovery of AmpC b-lactamases is
provided in Table 1. pMAmpC b-lactamases have been discovered most
frequently in isolates of K. pneumoniae and also in
naturally ocurring AmpC species like Klebsiella oxytoca,
Salmonella spp., and P. mirabilis. E. coli can also increase
Origin and evolution of AmpC production of its normally weakly expressed chromoso-
mal AmpC promoter or attenuator with consequent
b-lactamases enhanced gene expression [36,37]. Plasmid-determined
cephalosporinase have been found in Africa (Algeria,
By observing phylogeny, it was determined that the ampC
Tunisia), Asia (India, Japan, Pakistan, South Korea),
gene has been mobilized at least six times [31]. The LAT
Europe (France, Germany, Greece, Italy, Sweden, United
alleles and most of CMYalleles were descended from a C.
Kingdom), the Middle East (Saudi Arabia), North
freundii ampC gene. This group includes CMY-3b, which
America (United States), and South and Central
was found in the chromosome of P. mirabilis [32] and must
Americas (Argentina, Guatemala).
have entered that chromosome by horizontal transfer
from C. freundii. ACT-1 and MIR-1 descended from an
Several geographic clusters have been described [38].
ampC gene of E. cloacae, whereas, DHA-1 and DHA-2
These include a North American cluster (of MIR-1 and
were descended from M. morganii ampC [33,34]. An M.
ACT-1), a Central and South American cluster (of FOX-
morganii chromosomal ampC allele that was identical to
1 and FOX-2), and an Asian cluster (of CMY-2, CMY-2b,
plasmid-borne DHA-1 allele had been reported [34],
LAT-1, and LAT-2). Just as with strains producing ESBLs,
suggesting that the ampC gene from M. morganii has been
travel and transfer of patients has allowed importation of
mobilized twice. ACC-1 was descended from H. alvei
BIL-1 (CMY-2) enzymes from the Indian subcontinent
ampC. The FOX alleles were descended from an
to London [39], several CMY types (CMY-2, CMY-6,
Aeromonas sobria ampC gene. CMY-1, CMY-8, and
and CMY-7) from Punjab (India) to London [15], CMY-
CMY-9 and the MOX alleles were also mobilized from
2 from Algeria to France [40], CMY-4 from India to
the Aeromonadaceae group. The phylogeny showed that
Sweden, FOX-2 from Guatemala to Germany, ACC-1
although the ampC gene had been mobilized at least six
from Tunisia to France [41,42], and MOX-2 from Greece
times, with the exception of Morganella, it had only been
to France (S. Boyer-Mariotte, L. Raskine, B. Hanau, A.
mobilized once from any given species [31]. Hence, it was
Philippon, M.M. Sanson-LePors, and G. Arlet, Program
concluded that when the antibiotic resistance gene from
Abstract of the 38th Interscience Conference on
any given species was mobilized, it is less likely that the
Antimicrobial Agents and Chemotherapy, abstract C7,
gene will be successfully mobilized again from that species
1998).
than from a different species. Once a gene has been
mobilized and is free to move horizontally, it will spread
As described earlier, CMY-type enzymes are prevalent
through closely related members of that species and
and widely distributed [43], whereas DHA-type enzymes
perhaps other species [31].
have been isolated less often. CMY-2 is the most prevalent
pMAmpC as well as the most widely distributed
geographically. It has been reported in Algeria, France,
Germany, Greece, India, Pakistan, Taiwan, Turkey,
Epidemiology of plasmid-mediated AmpC United Kingdom, and the United States [4,44]. First
enzymes DHA-type enzymes were isolated in Saudi Arabia in
1992; then DHA-2-producing strains of K. pneumoniae
The ampC genes are widely distributed among the were isolated in France [45]. At the end of the 1990s,
Enterobacteriaceae [35]. In typical E. coli and Shigella DHA-1 was detected in two K. pneumoniae isolates from
species, ampC is expressed at such low levels that deletion California and Florida [7,46], whereas in Taiwan K.
of ampC does not affect the sensitivity to b-lactams, but in pneumoniae isolates producing DHA-1 were reported
C. freundii and E. cloacae, ampC is inducible both by between 1999 and 2001 [47]. DHA-1 was also reported in

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AmpC b-lactamases – an update Shahid et al. 45

Seoul, South Korea. Recently blaDHA-1 has been found in amino acid sequence [53]. Figure 1 shows the clonal
S. enterica serovar Montevideo in Korea [48] and S. enterica relationship of various plasmid and chromosomal AmpCs
serotype Seftenberg in United Kingdom [49] and very whose sequences were available in GenBank at the time of
recently from an E. coli isolate in India (GenBank writing this review.
Accession No. EU589460).

Many strains with plasmid-determined AmpC enzyme


also produce TEM-1, TEM-2, SHV-5 [39,50], or even Genetic environment of bla AmpC genes
CTX-M-15 [5].
Some ampC genes are located within or near mobilizing
elements, such as transposons or integrons [54]. Integrons
have been implicated in the horizontal transfer of class C
b-lactamases, but not as gene cassettes, as has been seen
Relationship of chromosomal and plasmid- for the Ambler class A, B, and D b-lactamases [55]. Many
encoded AmpC enzymes resistance genes are located on gene cassettes with a
downstream 59-base element that acts as a specific
A dendrogram of chromosomal and plasmid-encoded recombination site for incorporation into integrons [54].
AmpC enzymes demonstrated the diversity of chromo- Analysis of published sequences indicates that AmpC
somal AmpC genes and the close relationship of some genes found on plasmids are not linked to 59-base
plasmid-mediated enzymes to chromosomal enzymes of elements. In fact, several ampC genes, such as blaDHA-1,
particular organisms. The plasmid-mediated enzymes blaFOX-4, blaCMY-1, blaCMY-8, and blaMOX-1, have been
could be divided into five or six clusters: the C. freundii described in a particular class 1 integron, originally
group with LAT types and certain CMY types, the identified in In6 and In7, which contain two copies of
Enterobacter group with MIR-1 and ACT-1, the M. the 30 conserved segment (30 -CS1 and 30 -CS2) surround-
morganii group with DHA-1 and DHA-2, the H. alvei ing a common region and an antibiotic resistance gene
group represented by ACC-1, and the Aeromonas group [25,56–58]. The common regions are always located
with MOX-type, FOX-type, and other CMY-type downstream of truncated 30 CS of integrons and at the
enzymes [25]. The relationship between plasmid- same site approximately 0.2 kb downstream of the 30 end
encoded enzymes and certain chromosomal b-lactamases of Orf 513. 2.1 kb common regions represent one end of
was found to be very close: there was 100% amino acid an undefined transposon, which comprises these unique
homology within the M. morganii and H. alvei groups and sulI-type integrons with resistance gene cassettes. More-
more than 94% homology within the C. freundii group. over, a variety of genes conferring resistance to antibiotics
ACT-1 and MIR-1 shared 91.4% amino acid identity such as broadspectrum b-lactams, chloramphenicol, and
with each other but only 85–87% identity with most E. trimethoprim are located immediately downstream of
cloacae AmpC enzymes. However, the enzyme from E. this putative transposon. Other antibiotic resistant genes
cloacae strain GN7471 [51] had 91.1% identity to ACT-1 have now been reported adjacent to the common region
and MIR-1, and an environmental strain of Enterobacter of similar integrons, such as qnr in In 37, blaCTX-M-9 in In
was 98% identical, so that origin from some Enterobacter 60, dfrA10 in In 34, dfrA10 in variant Salmonella genomic
species was likely suggested (M. Rottman and G. Arlet, island (SGI1) from S. enterica serovar Agona, blaCMY-9 in
personal communication). FOX enzymes have been pCMXR1 from E. coli and catA2 in pAr-32 from
reported to have 95% or more sequence identity within Aeromonas salmonicida [59]. It is, therefore, speculated that
the group, and CMY-1, CMY-8, and CMY-9 are more these Gram-negative bacteria have accumulated an array
than 97% identical, but either group has only about 74% of antibiotic resistance genes through transposition of a
identity with the available A. sobria AmpC sequences, putative transposon, which carries integrons with gene
which, in turn, differ from each other by more than 25% cassettes conferring resistance to aminoglycosides, into
[25]. The AmpC sequence of P. aeruginosa is even more the vicinity of other classes of resistance genes, effectively
distant, so the origin of these enzymes remains uncertain acquiring phenotypes of multidrug resistance. DHA-1
[25]. structural and regulatory genes are present in an integron
that includes a site-specific integrase, two copies of
According to PCR and sequencing results, the b- qacED1 SulI, an aad A2 gene for aminoglycoside
lactamases of E. cloacae K992004.1 and E. cloacae resistance with its downstream 59-base element, and orf
K995120.1 were identical to the chromosomal AmpC 341, a postulated recombinase [59]. ampC and ampR
b-lactamases of E. cloacae MHN1 [52] and those of E. genes from the chromosome of M. morganii [34,60], thus,
cloacae K99230, Enterobacter aerogenes K9911729, E. cloacae appears to have inserted into a complex sul I-type
K9973, and E. cloacae K9914325 were similar to that of E. integron (readers are encouraged to see [59] for a detailed
cloacae MHN1 (98.5, 98.2, and 98.2% identity of amino description of genetic organization of ampC and ampR
acid sequence). E. aerogenes K9911729 was found to be genes originating from M. morganii). Nucleotide
closely related to CMY-1 and showed 99.7% identity of sequences of In6 and In7 have now been updated to

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46 Review in Medical Microbiology 2009, Vol 20 No 3

Fig. 1. Neighbour joining tree with branch length self-drawn using the Clustal X software based on the sequences of various
plasmid and chromosomal blaampCs available in GenBank.

Copyright © Lippincott Williams & Wilkins. Unauthorized reproduction of this article is prohibited.
AmpC b-lactamases – an update Shahid et al. 47

contain orf 513, not orf 341 (GenBank Accession contrast, M. morganii possesses the ampR and ampC genes
Nos. L06418 and L06822, respectively). Partridge and but not the fumarate operon [34]; and hybF is substituted
Hall [58] showed that CR1 containing open reading for the fumarate operon upstream from the ampC gene.
frame (ORF) orf513, CR2 (containing orfA), and CR3
(containing orf2) form a family of genetic elements
involved in the mobilization of resistance genes in Gram-
negative bacteria. It has been proposed that orf513
catalyzes the incorporation of a resistance gene at the 30 Enzymatic properties
end of the common region. pMAmpCs have pIs between 6.4 and 9.4. In strains
containing several b-lactamases, AmpC enzymes can be
Characterization of genetic environment of E. coli identified after isoelectric focusing by differential
revealed the presence of plasmid located class 1 integron, inhibition of nitrocefin reactivity with 5 mg of cefox-
In53. The integrase gene of In53 was found to be itin/ml [23]. Few plasmids were found to carry both
interrupted by an IS26 insertion sequence, which was also ampR and ampC and were inducible (DHA-1 and DHA-
present in 30 CS. Thus, In53 is a truncated integron 2), but most pMAmpCs genes expressed constitutively
located on a composite transposon, named Tn2000 (MIR-1, which expressed constitutively even in the
bounded by two IS26 elements in opposite direction [61]. presence of complete system for induction) [70]. The
apparent molecular size of mature pMAmpCs vary from
Genes for the AmpC enzymes have been located on 38 to 42 kDa. The amino acid sequence of enzymes
plasmids of sizes varying from 7 to 180 kb [14,62]. A few revealed an active site serine in motif Ser-X-X-Lys (X is
of the plasmids have not been self-transmissible but are any amino acid) at residues 64–67 of the mature protein.
transferable by transformation [14,23,63] or mobilization A Lys-Ser/Thr-Gly motif has been found at residues
[50,54,64,65]. Plasmids encoding AmpC enzymes often 315–317 and forms the tertiary structure of the active
carry multiple other resistances, including resistance to site. A tyrosine residue at position 150 forms part of class
aminoglycosides, chloramphenicol, sulphonamide, tetra- C typical motif Tyr-X-Asn and is important for catalysis
cycline, trimethoprim, or mercuric ion [3,14,23,66,67]. of b-lactam hydrolysis [72]. The plasmid-mediated
A plasmid encoding a FOX-type enzyme even carried a enzymes can be divided into following clusters: C.
gene for fluoroquinolone resistance [68]. Clinical isolates freundii group (group with LAT and certain CMY types),
often produce other b-lactamases in addition to an AmpC Enterobacter group (group with MIR-1 and ACT-1), M.
enzyme. The bla genes may be on different plasmids, but morganii group (group with DHA-1 and DHA-2), and H.
often they coexist on the same plasmid. For example, the alvei group are represented by ACC-1, whereas Aeromonas
gene for ACT-1 was found in clinical isolates along with a group is represented by MOX, FOX, and other CMY
pI 5.6 b-lactamase consistent with TEM-10 or TEM-26 types of enzymes. Very recently, a detailed review
and a pI 7.6 enzyme consistent with SHV-1, and on covering their physical and enzymatic properties (includ-
cloning the ACT-1 gene was found in a 15-kb cluster ing enzyme kinetics), structure and essential sites,
with genes for a b-lactamase of pI 5.4, presumably TEM- regulation, their pumps and porins, has been published
1, and pI 7.0, possibly another SHV-type enzyme [3]. [73]; and, therefore, these parameters have not been
Furthermore, an ACT-1 probe hybridized to chromo- described in detail in the present article.
somal DNA of these clinical strains, implying mobility of
the gene by carriage on a transposon. Indirect evidence
suggests that CMY-3 and CMY-4 could be transposon-
mediated as well: CMY-3 because its gene is located on
the chromosome of a species (P. mirabilis) lacking a native Susceptibility to different antimicrobials
ampC gene [32], and CMY-4 because in E. coli clinical and mechanisms of resistance
isolates from London a CMY-4 probe hybridized to both
7 and 45-kb plasmids, a dual location that could be Strains with plasmid-mediated AmpC enzymes were
explained by transposability [14]. The MIR-1 gene is consistently resistant to the aminopenicillins (ampicillin
located near a sequence closely related to an insertion or amoxicillin) and carboxypenicillins (carbenicillin or
sequence transposase, but direct attempts to demonstrate ticarcillin) and ureidopenicillins (piperacillin), whereas
transposability of MIR-1 or BIL-1 (CMY-2) have not among penicillins, strains were found to be susceptible only
been successful [69,70]. to amidinocillin or temocillin. AmpC enzymes provided
resistance to cephalosporins in the oxyimino group
Most plasmid-encoded AmpC b-lactamases, like CMY- (ceftazidime, cefotaxime, ceftriaxone, and cefuroxime)
2, CMY-4, and LAT-1, lack the ampR gene. Citrobacter and 7-a-methoxy group (cefoxitin, cefotetan, and
spp. and Enterobacter spp. possess ampR and ampC genes, moxalactam). The enzymes were also active against the
the fumarate operon frdABCD immediately downstream monobactam, aztreonam. Alteration in antibiotic access to
of the ampR gene, and also outer membrane lipoprotein the enzyme can markedly change the susceptibility profile.
blc immediately downstream of the ampC gene [71]. In The Gram-negative bacteria have outer membrane

Copyright © Lippincott Williams & Wilkins. Unauthorized reproduction of this article is prohibited.
48 Review in Medical Microbiology 2009, Vol 20 No 3

proteins (OMPs) and one family of OMPs is a porin, which been described and all of them carry the ampR and ampC
forms water-filled channels that permit diffusion of small genes [33,45,83] The ampC gene of E. coli is normally
hydrophilic solutes. OmpK 36 porins in K. pneumoniae expressed at a low level, regulated by a growth rate
were found to augment resistance provided by ESBLs and dependent attenuation mechanism but not by induction,
pMAmpC to include resistance to oxyimino-b-lactams because ampR is missing. Owing to mutations, the
and carbapenems [74]. Hyperproduction of chromosomal expression of a chromosomal gene encoding AmpC
AmpC together with porin loss in E. coli [75] or porin b-lactamase can be increased during therapy with third-
deficiency alone in K. pneumoniae can give rise to generation cephalosporins, but as to what extent fourth-
cephamycin and oxyimino-b-lactam resistance. According generation cephalosporins are affected by this mechanism
to Pai et al. [76], pMAmpCs are associated with potentially is not fully understood. Genetically, promoter changes
fatal errors of false susceptibility in routine susceptibility [36,37], insertion of IS2 [84], an optimized distance [85]
tests. in the pribnow box (-35 and -10), and the presence of
more than one copy of ampC have been described as
crucial factors for ampC hyperproduction. The presence
of mutations in the promoter region is the mechanism
Mechanism of inducibility of AmpC gene most frequently reported to be responsible for the
hyperproduction of b-lactamases.
AmpC is inducible through a system involving ampD,
ampG, ampR, and intermediates in peptidoglycan
recycling. ampD encodes a cytosolic N-acetyl-anhydro-
muramyl-L-alanine amidase that hydrolyze 1,6-anhydro- Detection of AmpC producers
muropeptides, whereas ampG encodes a trans-membrane
permease and ampR a transcriptional regulator of LysR The current CLSI documents (formerly NCCLS) do
family [27,77,78]. not indicate the screening and confirmatory tests that
should be used for the detection of AmpC b-lactamases.
During normal bacterial growth, in the absence of b- However, methods of detecting ESBL-producing bacteria
lactam, anhydromuropeptides released from bacterial have been evolving for more than a decade, beginning
peptidoglycan in the periplasm are imported into the with the description of the disk approximation test by
cytoplasm by AmpG and hydrolyzed by amidase AmpD, Brun-Buisson et al. [86] and subsequently described by
and the resulting components are then used for synthesis Jarlier et al. [87]. The three-dimensional test, originally
of murein precursor. One of the precursors, UDP-Mur- described by [88] is a more sensitive procedure for the
Nac pentapeptide (uridine-pyrophosphoryl-N-acetyl detection of ESBLs. However, this technique had its own
muramyl- L -alanyl- D -glutamyl-meso-diaminopimelic limitations. The test was modified with the use of a slit
acid-D-alanyl-D-alanine) binds to AmpR, causing AmpR technique with bacterial suspensions and enzyme extracts,
to assume configuration that does not activate ampC but filling these slits was a fastidious procedure [89–91].
promoter, thereby resulting in low level of ampC Subsequently, a simple and user-friendly procedure was
expression. In contrast, in the presence of b-lactam, developed using punched wells in place of slits [92].
anhydromuropeptides accumulate in the cytoplasm and
thus displace UDP-Mur-Nac pentapeptide from its An AmpC disk test was developed by Black et al. [93]
AmpR-binding site. AmpR thereby assumes an active that was found to be a simple, convenient, and accurate
configuration and enhances ampC expression. In the means of detection of pMAmpCs in organisms lacking
absence of b-lactamase inducer, ampR represses the chromosomal AmpC b-lactamase. The test accurately
synthesis of b-lactamase 2.5-fold, whereas expression distinguished between cefoxitin insusceptibility caused
induced 10–200-fold in the presence of b-lactamase by AmpC production and nonb-lactamase mechanism
inducer [79]. Mutations in the specific site of ampR work like reduced outer membrane permeability (porin
as an activator of ampC and results in hyperproduction of mutation), but this test was not able to discriminate
AmpC [80,81]. Deletion mutation of the ampR gene between positive results due to upregulated chromo-
results in a slightly higher level of basal expression of the some-mediated AmpC and those due to pMAmpCs.
C. freundii b-lactamase, but enzyme synthesis can no Later, in the same year, Black et al. [94] described the
longer be induced. Knockout mutations in the ampD diagnostic utility of AmpC b-lactamase inhibitors, LN-
gene result in constitutive hyperproduction of the b- 2-128, RO 48–1220 (Fig. 2a), Syn 2190 (Fig. 2b) in
lactamase, even in the absence of a b-lactam inducer [82]. combination with cefotetan or cefoxitin in a disk test for
detection of clinical isolates of Klebsiella spp. producing
Until recently, plasmid-encoded ampC genes were pMAmpCs. LN-1220 is a C-3 substituted cephalo-
considered noninducible because they lacked the sporin-derived inhibitor with a broad spectrum of
regulator gene ampR [25]. However, this generalization inhibition and inhibits both class A (TEM and SHV) and
is no longer valid, as three inducible plasmid-encoded class C (Amp C type) b-lactamases, whereas RO 48-1220
AmpC b-lactamases, DHA-1, DHA-2, and ACT-1, have is a 2b alkenyl penicillanic acid sulfone inhibitor also with

Copyright © Lippincott Williams & Wilkins. Unauthorized reproduction of this article is prohibited.
AmpC b-lactamases – an update Shahid et al. 49

the growth inhibitory zone [99]. Enlargement of zone of


inhibition by more than 5 mm was adopted as positive
result with APB-inhibited ceftazidime and cefotaxime
resistance in AmpC-producing strains. The exceptions
found were ACT-1-producing and MOX-2-producing
strains that failed with ceftazidime plus APB and DHA-1
and FOX-1 producing strains that failed with cefotaxime
plus APB. A positive response to APB indicates pro-
duction of an AmpC b-lactamase, but not necessarily
a plasmid-mediated enzyme, as in E. coli strains, this
phenotype may result also from an overexpression of
chromosomal ampC gene. In 2006, Ruppe et al. [100]
proposed a simple cefoxitin-based double-disc synergy test
(DDST) for specific detection of ACC-1 in members of
Enterobacteriaceae, including natural AmpC producers, in
association with the cloxacillin-based DDST as a first-line
AmpC-type b-lactamase screening test. Application of
combined multiple double-disc tests integrated in routine
antibiogram was considered as reliable and easy approach
by Apfalter et al. [101] to identify the prevalence of
Fig. 2. AmpC b-lactamase inhibitors RO 48-1220 (a) and Syn
ESBLs in AmpC producers. Some bacterial species may
2190 (b).
produce an inducible AmpC b-lactamase, which can be
overlooked by routine susceptibility tests. Cantarelli et al.
[102] described a new test based on the strong inducible
a broad spectrum of inhibition and Syn 2190 is a effect of imipenem on AmpC and consequent antagonism
monobactam derivative containing 1,5-dihydroxy-4- with ceftazidime. Ceftazidime–imipenem antagonism test
pyridone as a C-3 side chain and is a potent inhibitor of (CIAT) can be used to confirm the presence of known,
class C b-lactamases. The combination of Syn 2190 and as well as new, inducible enzymes, among enterobacterial
cefotetan was found to have sensitivity of 91% and strains.
specificity and reproducibility of 100% respectively.
Suspected AmpC producers can be studied further for Genetic testing can be done by using multiplex PCR (for
cephamycin hydrolysis with the three-dimensional AmpC) as described by Perez-Perez and Hanson [103].
extract test. Cloxacillin can be used to block AmpC One can identify family-specific AmpC b-lactamase genes
activity selectively after isoelectric focusing. Lack of through this method, in which six sets of ampC-specific
inhibition of activity against oxyimino-b-lactams or primers resulting in amplicons that range from 190 to
cephamycins by clavulanate is indirect evidence for 520 bp that can be distinguished by gel electrophoresis.
presence of AmpC enzyme, but some AmpCs were This PCR-based assay differentiated multiple genes within
found unusually susceptible to inhibition by tazobactam one reaction. WAVE DNA fragment analysis was
[95]. performed in order to shorten the time required for
analysis and it increases sensitivity of multiple-gene assay
Partially derepressed strains could be mistaken for AmpC [103]. WAVE technology is a high-pressure liquid
producers if they are tested in the absence of inducer chromatography-based nucleic acid analysis and peaks
cefoxitin. Jacoby et al. [96] have proposed a disc-based are observed where each peak had a retention time
method that could be used to detect various b-lactamases equivalent to retention time observed in the single template
in E. coli and K. pneumoniae. Recently, a test for AmpC- amplification, and hence amplified PCR products can be
type b-lactamases that involves augmentation of the compared with chromatogram obtained in WAVE analysis.
inhibition zone around ceftazidime and cefotaxime discs To determine the genetic environment of bla genes,
by boronic acid has been proposed by Yagi et al. [97]. standard PCR amplification and sequencing analyses were
Testing is complicated by the fact that the pattern of performed with sets of primers that were designed on the
resistance may be altered by porin loss [98]. Researchers basis of nucleotide sequence deposited in EMBL/
have used commercially available boronic acid com- GenBank/DDBJ databases.
pounds, APB (3-aminophenyl boronic acid), NPB (3-
nitrophenyl boronic acid), and TPB (2-thiophene In 2007, Zhu et al. [104] developed Multiplex Asymmetric
boronic acid) and found APB as most practical candidate PCR (MAPCR)-based Oligonucleotide Microarray for
among specific inhibitors of class C b-lactamase because detection of 10 known ESBLs and pMAmpC b-lactamase
NPB and TPB were found to have antibacterial activity genes in Gram-negative bacteria. MAPCR is based on a
by themselves at concentrations of about 300 mg/ml, two-round reaction to promote the accumulation of single
leading to misinterpretation of the change in diameter of stranded amplicon amenable for microarray hybridization

Copyright © Lippincott Williams & Wilkins. Unauthorized reproduction of this article is prohibited.
50 Review in Medical Microbiology 2009, Vol 20 No 3

by employing multiple universal unrelated sequence- might spread across different bacterial species within the
tagged primers and elevating annealing temperature at human host [109].
second round of amplification.
The association of replicons with specific plasmid-borne
SDS-PAGE whole-cell protein profile analysis was used resistance genes opens the possibility of easily detecting
for the first time by Costas et al. [105] for typing clinical and tracing the diffusion of successful plasmids as well as
isolates of Klebsiella aerogenes. Manchanda et al. [106] used detecting the mobilization capability of a resistance gene
this technique as an effective adjunct to other methods of among different plasmids.
typing of isolates of AmpC-producing K. pneumoniae.
This study also demonstrated the usefulness of SDS-
PAGE and ribotyping as epidemiological typing tech-
niques, the latter being more discriminatory. Regions responsible for the extended
substrate spectrum in class C b-lactamase
Readers are also encouraged to read a recently published
article [73] for details of AmpC detection in clinical Wachino et al. [30] designated the amino acid sequence
laboratories. from 279 to 287 as H-10 helix, which may be based on
crystal structure of AmpC K-12, but Lee et al. [110] showed
that sequence from 289 to 294 was H-10 (a10) helix, based
on superimposed crystal structure among CMY-10, P99,
and GC1 b-lactamases. There are different positions of
Replicon typing H-10 helix that are related to the extended substrate
spectrum in class C b-lactamase, hence it has been
Understanding the molecular epidemiology of resistance proposed that the exact region responsible for the extended
plasmids has proven to be a complex task due to diversity substrate spectrum is the R2 loop (residues 289–307)
and promiscuity of these elements. The relatedness of [111]. The following reasons support the proposal whereby
these plasmids can be demonstrated either by restriction the exact region is R2 loop in R2 active site:
fragment pattern analysis or by classification into
incompatibility groups (Inc groups) and replicon (rep) (1) The R2 loop includes all regions responsible for the
typing [107]. A PCR-based replicon typing (PBRT) extended substrate spectrum in all reported class C
method has been recently developed and can be easily extended spectrum b-lactamases except HKY 28 [112].
applied to a larger number of strains [108]. Replicon These regions are six amino acid deletion (residues 289–
typing of plasmids carrying blaCMY b-lactamase genes 294) of CHE [113], single amino acid substitution (L
indicates a predominance of T1 and A/C replicons 296 H) of AmpC KL, four amino acid deletions
among blaCMY-carrying plasmids [109]. Inc T1 plasmids (residues 293–296) of HD [114], three amino acid
carrying blaCMY genes show some difference with respect deletions (residues 303–305) of CMY-10 [111], single
to the additional plasmid-located resistance (mainly amino acid substitution (I 292 S) of CMY-19 [29], and
sulfonamide or trimethoprim resistance) or to a capability the L 293 P substitution of Ear 2 [115].
of self-transferability. Furthermore, as the blaCMY-2, (2) Mutations in the R2 loop can change the architecture of
blaCMY-4, and blaCMY-21 gene differ from each other by the active site in class C ESBLs. Owing to the deletion in
only one or a few nucleotide substitutions, they could, CMY-10, the R2 loop in R2 active site results in
therefore, simply be variants of one another and this shortened path of the connection R2 loop between a10
evolution could have occurred within the same Inc I1 or and b11, which induces a nearly 2.5 Å shift of a9 and
Inc A/C plasmid scaffold by accumulation of single- a10 relative to adjacent helix a11 in CMY-10 and
point mutations. opening the gap between a9, a10, and a11 [111];
hence, bulky R2 side chain of extended spectrum
The detection of same resistance gene (blaCMY-2) on an cephalosporins could fit snugly into significantly
Inc A/C plasmid carrying the same repA gene variant widened R2 active site [116].
strongly indicates that the blaCMY- A/C plasmid could
be a successful and widely distributed plasmid circulat-
ing on different continents. Results obtained by PBRT
indicates the high prevalence of some replicons, such as Contribution of ampC promoter mutations
rep I1 and rep A/C, in association with relevant to cefoxitin resistance in Escherichia coli
extended-spectrum cephalosporin-resistant genes, such
as the blaCMY-2 gene, suggesting a large diffusion of The AmpC resistance phenotype in E. coli can be a result
particular plasmid prevailing in bacterial populations of of overexpression of the chromosomal ampC gene,
the United Kingdom, but also identified in bacterial acquisition of plasmidic ampC, alterations in the
populations from other continents. These epidemic permeability of the cell to cefoxitin or a combination
plasmids seem to prevail in different environments and of these factors. Analysis of cefoxitin-resistant strains has

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AmpC b-lactamases – an update Shahid et al. 51

revealed that ampC promoter and attenuator regions often ization of the hairpin structure, resulting in increased
carry mutations leading to overproduction of enzymes transcription. Insertion of IS elements in the promoter
[37,117–120]. These AmpC overproducing strains are region causes up-regulation of gene expression by
not only resistant to ampicillin but also usually have producing an alternate promoter [84]. In E. coli, insertion
reduced susceptibilities to expanded-spectrum cephalo- of IS911 in the promoter spacer region resulted in the
sporins. Genetically the most common mutations are possible generation of a stronger -35 sequence and 17 bp
those that create a strong promoter that more closely spacer region, thereby creating a hybrid promoter
resembles the E. coli consensus promoter [121] and sequence that more closely resembled the E. coli
mutations that destabilize the attenuator. The lack of consensus promoter sequence. Insertion of IS10 element
clonal strain dissemination, the high numbers of between attenuator and the start codon presumably
mutations in the promoter and attenuater regions, and allowed ampC to be transcribed and also nullified any
the small numbers of acquired AmpC resistance genes effect from attenuator region.
suggest that antimicrobial selective pressure may be
playing a significant role in the potential emergence of
cefoxitin resistance during treatment of a patient.
Conclusion
Analysis of promoter regions in E. coli showed the
presence of two conserved regions, the -35 box and -10 Resistant bacteria are emerging worldwide as a threat to
box, also called the pribnow box [121]. For most favorable treatment outcome of common infections in
promoters, the degree of homology to the -35 consensus hospital and community. b-Lactamase production by
sequence, TTGACA, and the -10 consensus sequence, Gram-negative (especially members of Enterobacteria-
TATAAT, is directly related to promoter strength. ceae) and some Gram-positive bacteria is perhaps the
Furthermore, the spacing between these two regions most important resistant mechanism; however, other
plays a role in promoter strength, with the optimal mechanisms including porin loss, AmpC b-lactamase
distance being 17 bp. Various studies have reported production, or carbapenemase production are also
that variations in the promoter and attenuator regions increasing markedly. AmpC-type resistance in the
of ampC are a mechanism of hyperproduction of hospital setting is not primarily due to the dissemination
AmpC protein that results in cefoxitin resistance of clonal strains or the spread of resistant plasmids but is
[37,117,119,120,122]. Changes at position -42 (C!T) due to the emergence of resistant strains in patients,
in the ampC promoter were shown to increase possibly through selective pressure from antibiotic
transcription by 43-fold [37] or 18-fold, depending on prescribing. Therefore, in our opinion, more focused
the type of transcriptional reporter system used. The studies on AmpC b-lactamases and an urgent need by
C!T transition at position -42 results in modification of CLSI to frame guidelines for AmpC detection are
the transcriptional initiation site of up to 5 bp upstream required in the near future.
from original site [36]. Almost all of promoters harboring
this change also had a corresponding T!A transversion at
position -18, and this change resulted in a new -42 box,
resulting in the formation of a strong promoter as has been Acknowledgement
described in cefoxitin-resistant E. coli strains [36,37,122].
Mutations at position -42 and -18 or at position -18 only M. Shahid is grateful to Department of Science &
were the most common promoter-region variations, Technology, Ministry of Science & Technology, Govern-
suggesting that these changes may be favoured in situ over ment of India for the award of ‘Young Scientist Project
other promoter-region mutation that may affect ampC Award’ (FT/SR-L-111/2006)
expression [123]. Changes in the -35 and -10 boxes or in
the spacer region that result in ampC promoter sequences
more closely resemble the E. coli consensus promoter
sequence [117,119,120,122]. A T!A transversion at References
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