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Genet Resour Crop Evol

https://doi.org/10.1007/s10722-020-00886-8 (0123456789().,-volV)
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RESEARCH ARTICLE

Diversity of grasses (Poaceae) in southern Africa,


with emphasis on the conservation of pasture genetic
resources
M. Trytsman . F. L. Müller . A. E. van Wyk

Received: 12 June 2019 / Accepted: 16 January 2020


Ó Springer Nature B.V. 2020

Abstract A renewed interest in the present state of and 685 species, inferring that only 20% of the world’s
genebanks conserving pasture genetic resources grass genera and 6% of world’s grass species are found
worldwide motivated this study to quantify the wealth in the study area with Panicoideae the most speciose
of grass (Poaceae) diversity indigenous to southern subfamily. Paniceae is the only tribe with large
Africa, here defined as South Africa, Lesotho and numbers of both C3 and C4 species and with several
Eswatini (previously Swaziland). Botanical occur- species of high grazing value, therefore, was suggested
rence records were extracted from BODATSA and as a priority lineage in the collection and conservation
PHYTOBAS datasets to generate a list of grass species efforts of the South African National Forage Gene-
indigenous to the study area. The phylogenetic bank. This genebank conserves at present 73 genera
classification, growth form, photosynthetic pathway, and 162 indigenous grass species, i.e. 48% and 24% of
grazing status, endemism and conservational status the total number of taxa respectively, denoting the
attributes were added to the 43,889 species level current vulnerable status of grass genetic resources in
records, sourced from published literature. Results southern Africa. A need to therefore collect and
from the current study indicate that the subcontinent is conserve grass genetic resources is emphasised, with
represented by eight subfamilies, 25 tribes, 151 genera greater focus on the conservation of seed of well-
known pasture genera classified as endangered or
possibly extinct (mainly Panicum L. and Secale L.).
Electronic supplementary material The online version of
this article (https://doi.org/10.1007/s10722-020-00886-8) con- Keywords Endemism  Eswatini  Gramineae 
tains supplementary material, which is available to authorized Lesotho  South Africa
users.

M. Trytsman (&)  F. L. Müller


Agricultural Research Council-Animal Production
Institute, Lynn East, PB X05, Pretoria 0039, South Africa Introduction
e-mail: mtrytsman@arc.agric.za

A. E. van Wyk Poaceae (Gramineae), the members of which are


Department of Plant and Soil Sciences, University of commonly referred to as grasses and bamboos, is
Pretoria, Pretoria 0002, South Africa considered as probably the most valuable plant family
A. E. van Wyk
to humankind (Bouchenak-Khelladi et al. 2010). The
National Herbarium, South African National Biodiversity family includes the economically important cereals,
Institute, Pretoria 0001, South Africa

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sugar crops, reeds, bamboos, forages and lawn grasses The decline in the pasture breeding capacity in
(Hodkinson 2018). The success of this family can be South Africa (Truter et al. 2015) has resulted in many
attributed to, amongst others, its adaptability to most of these species not being characterised and evaluated
ecosystems, including arctic regions and at high for their pasture potential. Therefore, due to the lack of
elevations uninhabitable by flowering plants (Tzvelev information regarding their pasture potential these
1989), ecological dominance in many ecosystems, and species have not yet been included in breeding and
high species richness (Linder et al. 2018). evaluation programs. These plant genetic resources
The important role of the Poaceae in sustainable are, however, still important sources of genetic
livestock production is well known, with several material that could, under future bioclimatic condi-
genera housing important pasture species (Truter et al. tions become valuable resources for breeding of future
2015; Capstaff and Miller 2018). The exploration of pasture species adapted to specific agro-ecological
the potential of southern African grasses for pastures conditions. As a result, these plant genetic resources
began as early as the 1900s, with the past 50 years are maintained in perpetuity at the SA-NFG as a means
described as a period where the function and value of to maintain the plant genetic diversity that could
southern African grasses were studied by several potentially be beneficial under future bioclimatic
pasture researchers (Truter et al. 2015). An important conditions. Maintaining and conserving these plant
initiative towards the conservation of grass genetic genetic resources however, puts significant financial
resources in southern Africa was a collection excur- pressure on the SA-NFG. Recently, Pengelly and
sion specially arranged for this purpose, to the Kruger Maass (2019) and Maass and Pengelly (2019) called
National Park in South Africa, during the early 1990s. for the prioritization of germplasm as well as to
This ensured that selected ecotypes of important improve the efficiency in conserving current collec-
pasture species such as Anthephora pubescens Nees, tions of plant genetic resources housed at genebanks
Cenchrus ciliaris L., Chloris gayana Kunth, Cynodon across the globe. This, in turn, is believed to reduce the
dactylon (L.) Pers., Digitaria eriantha Steud., Era- financial burdens on genebanks, by shifting efforts to
grostis curvula (Schrad.) Nees and Panicum maximum only priority species, and locally adapted varieties and
Jacq. were conserved in the South African National ecotypes within important pasture species with known
Forage Genebank (SA-NFG) (Kruger et al. 1993). agronomic potential (Pengelly and Maass 2019; Maass
However, similar to trends in the international and Pengelly 2019). This will allow for the conserva-
genebank community, especially those housing trop- tion of a larger genetic diversity within species with
ical and sub-tropical plant genetic resources (Maass known agronomic potential, which, in turn, will
and Pengelly 2019; Pengelly and Maass 2019), the benefit future breeding programs of these species.
conservation of these plant genetic resources have An example of this can be found in domesticated
been under threat for the last 20 years. Generally, the African grass species such as Sorghum bicolor (L.)
funding to manage and maintain forage genebanks Moench and Pennisetum glaucum (L.) R.Br. that are
around the globe is on the decrease, resulting in many currently maintained and conserved for at least two-
important plant genetic resources potentially being thirds of their diversity of their wild relatives (Buckler
lost (Maass and Pengelly 2019). In the case of the SA- et al. 2001).
NFG, the plant genetic resources maintained at the Van Wyk (1995) emphasized that the recognition
facility was mainly threatened by the lack of funding and interpretation of genetic variation in organisms is
which resulted in unreliable storage and testing at the heart of taxonomy and called on plant
facilities, coupled with a decline in trained personnel taxonomists in Africa for the urgent naming of
capable of maintaining and evaluating the valuable infraspecific units. A striking example that highlighted
collection of plant genetic resources housed at the the importance of this appeal was the revision of
facility. Also, the SA-NFG houses a large number and Agrostis eriantha Hack. var. planifolia Goossens &
diversity of plant genetic resources, many of which Papendorf being reduced to synonymy under A. eri-
currently are perceived to have minimal to no antha Hack. (Victor et al. 2012). A method to
agronomic potential due to the lack of information prioritize taxonomic revision of South African plant
regarding their pasture potential. These species were genera was developed by Victor et al. (2015) to reduce
collected with future breeding in mind. the taxonomy-conservation disorder where indicators

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such as revision dates, insufficient data (including diversity of indigenous grasses at tribe and species
taxonomic uncertainty) and endemism were proposed level. Linking attributes such as photosynthetic path-
as indicators. Furthermore, a literature review done in way, growth form and grazing status with phyloge-
the early 1990s showed that only a few key or netic classification could assist in distinguishing taxa
important indigenous grass species had complete with pasture potential. To ensure a similar outcome as
autecological studies with the exception of Themeda for the pasture potential appraisal of legumes (Legu-
triandra Forssk., Eragrostis curvula and Digitaria minosae/Fabaceae) indigenous to South Africa,
eriantha (Shackleton 1991). A need for a coordinated, Lesotho and Eswatini (previously Swaziland) (Tryts-
systematic approach in basic ecological research of man et al. 2016, 2019), this paper takes stock of the
grass species in different biomes was therefore wealth of indigenous grass genetic resources with
suggested. added references to grass species currently used in
The most recent taxonomic review of genera in pasture systems. This, in turn, will help with efforts to
southern African grasses was within the temperate prioritise conservation of important grass genetic
genus Helictotrichon Besser s.l. (Mashau et al. 2010) resources at the SA-NFG, in line with the call by
where two new species were identified. Germishuizen Maass and Pengelly (2019) and Pengelly and Maass
and Meyer (2003) recorded major name revisions (2019).
within the genera Aristida L. [= Stipagrostis Nees],
Danthonia DC [= Merxmuellera Conert; = Kar-
roochloa Conert & Türpe; = Chaetobromus Methods
Nees; = Centropodia Rchb.; = Dregeochloa Conert],
Phragmites Adans. [= Tribolium Desv.] and Rhynch- The Botanical Database of Southern Africa (BOD-
elytrum Nees [= Melinis P.Beauv.] whilst Pentaschis- ATSA) maintained by the South African National
tis (Nees) Spach and Setaria P.Beauv. were revised at Biodiversity Institute’s (SANBI) and stored in the
species level. However, Fish et al. (2015) indicated BRAHMS platform (Le Roux et al. 2017) was
that the genera Agrostis L., Anthoxanthum L., Cym- accessed on 2017/03/24 to extract the occurrence
bopogon Spreng., Cynodon Rich., Echinochloa records for Poaceae. The taxon and quarter degree grid
P.Beauv. and Puccinellia Parl. are also in need of cell (QDGC) records were extracted and refined, i.e.
revision. Remarkably, a new species of Enneapogon alien and naturalized species, species with no QDGC
Desv. ex P.Beauv. was recently identified by Mashau reference, species present outside the study area,
and Coetzee (2019) i.e. Enneapogon limpopoensis namely South Africa, Lesotho and Eswatini, hence-
Mashau, being possibly endemic to South Africa and forth referred to as southern Africa [SA], invalid
Zimbabwe. botanical names, synonyms, as well as incomplete
The classification system followed in earlier con- taxa were removed from the dataset. Genus and
tributions on the identification of southern African species names were verified using Fish et al. (2015) to
grasses (Gibbs Russell 1986; Ellis 1988; Gibbs Russell ensure that only species indigenous to SA were
et al. 1990) differ greatly from the present-day system included and naturalized or species recorded from
(Fish et al. 2015). Gibbs Russell et al. (1990) countries bordering the study area, were excluded. The
recognised five subfamilies and 21 tribes whereas database does not reflect all herbarium records from
Fish et al. (2015) recognized eight subfamilies and 24 southern Africa, but mainly those housed in the
tribes. Hence, one of the aims of the present study is to National Herbarium (PRE) in Pretoria and some of
provide fresh insights into southern African’s valuable its satellite herbaria, notably the KwaZulu-Natal
grass genetic resources within a modern classification Herbarium (NH) in Durban and the Compton Herbar-
framework. For the present study, the most recent ium (NBG) in Cape Town. Despite its inherent
worldwide phylogenetic classification of Soreng et al. limitations, the meaningful results generated justify
(2017) will be used for taxa found in the study area. the use of this database, the only one of its kind for the
The identification manuals of southern African grasses study area (Trytsman et al. 2016).
(Gibbs Russell et al. 1990; Fish et al. 2015) listed all In addition, the botanical survey records contained
indigenous grasses and also described the photosyn- in the PHYTOBAS database were accessed and
thetic pathway and growth form, highlighting the Poaceae records with GPS locations were extracted.

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Table 1 Botanical records of the Poaceae indigenous to South Africa, Lesotho and Eswatini contained in the Botanical Database of
southern Africa (BODATSA; maintained by SANBI) and PHYTOBAS (South African National Vegetation Data Archive) datasets
Database Date #QDGCs/GPS #Taxa #Records

BODATSA: Total (QDGCs) 2017/03/24 1803 740 40,865


BODATSA: Species level (QDGCs) 2017/04/05 1803 685 40,139
PHYTOBAS: Species level (GPS) 2018/09/18 3114 373 29,589
BODATSA & PHYTOBAS: Total (QDGCs) 2018/10/26 1811 765 47,652
BODATSA & PHYTOBAS: Species level (QDGCs) 2018/10/26 1803 678 43,889
QDGCs quarter degree grid cells, GPS records with global positioning system localities

PHYTOBAS is a National Vegetation Data Archive Table 2 The post-editing contribution of BODATSA and
(2003–2009), designed and administered by the late PHYTOBAS datasets
Dr Bobby Westfall. This database is currently inactive #QDGC % of Total
and the proposal by Specht et al. (2018) that ecological
BODATSA 1564 86.7
data should be curated, proposing online open access
PHYTOBAS 13 0.7
of historical data, is supported. Since PHYTOBAS
BODATSA & PHYTOBAS merged 226 12.5
seldom contain infraspecific taxa, only species level
Total 1803 100.0
records were used for further analyses. Introduced
grass species and incomplete taxon records were also
removed. A summary of the extent of the two datasets
following the editing and merging processes is shown
in Table 1. With the exception of references made to pathway and growth form, were added to each record.
grass pasture species conserved in the SA-NFG, no For the purpose of this study, growth forms indicated
other information was sourced from this genebank as ‘‘climber’’, ‘‘decumbent’’ and ‘‘scrambler’’ were
database. grouped under the term ‘‘trailing’’. The information
The merging of the two datasets resulted in many for the various attributes was sourced from, amongst
duplicated records within a QDGC. After duplicates others, Gibbs Russell et al. (1990), Germishuizen and
were removed, the contributing number of QDGCs for Meyer (2003), Van Oudtshoorn (2012), Fish et al.
the two datasets were determined and are shown in (2015) and SANBI (2017). The phylogenetic classi-
Table 2. BODATSA contributed to 86.7% of the total fication of Soreng et al. (2017) was followed to
dataset and PHYTOBAS 0.7%. Grass species listed by compile the evolutionary relationships of subfamilies
Fish et al. (2015), but not recorded in either and tribes. The bioregions vegetation map of Ruther-
BODATSA or PHYTOBAS, are documented and thus ford et al. (2006) was used as a base layer for
the only species not represented in this study. There generating maps with ArcView GIS 3.2, ESRI Inc.
were eight indigenous grass species not recorded in 2002. This vegetation map shows 35 bioregions where
either BODATSA or PHYTOBAS and these are listed a bioregion is defined as a composite special terrestrial
in Table 3. unit based on similar biotic (vegetation and floristic)
The collection and/or survey intensity (expressed as and physical features (landscapes and rock types) and
the number of grass species per QDGC collected as processes at the regional scale (Rutherford et al. 2006).
herbarium specimens), henceforth referred to as The biomes map of southern Africa (Rutherford et al.
collection intensity, was calculated and mapped. This 2006) and the Köppen-Geiger climate classification
is also used as a reference map to ascertain the map of southern Africa (Beck et al. 2018) are Online
presence or absence of grass species within QDGCs of Resources 1 and 2 respectively, to be used as reference
the study area when e.g. distribution maps are maps.
compared. The ‘Red List of South African Plants’ (SANBI
The taxonomy (subfamily and tribe) and descrip- 2017), was consulted for data on the conservational
tive attributes, specifically endemism, photosynthetic status of indigenous grass species. A list of grasses

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Table 3 List of Poaceae species indigenous to South Africa, Lesotho and Eswatini not recorded in the Botanical Database of
southern Africa (BODATSA; maintained by SANBI) and PHYTOBAS (South African National Vegetation Data Archive) datasets
Species Recorded in
a
Catabrosa drakensbergense (Hedberg & I.Hedberg) Soreng & Fish Lesotho
a
Ellisochloa papposa (Nees) P.M.Peterson & N.P.Barker Eastern Cape
Helictotrichon rogerellisii Mashau, Fish & A.E.van Wyk Western Cape
Helictotrichon roggeveldense Mashau, Fish & A.E.van Wyk Northern Cape
Melinis scabrida (K.Schum.) Hack. Limpopo
Pentameris praecox (H.P.Linder) Galley & H.P.Linder KwaZulu-Natal
Poa leptoclada Hochst. ex A.Rich. KwaZulu-Natal, Lesotho
Tribolium pleuropogon (Stapf) Verboom & H.P.Linder Southern Cape
a
Status: Vulnerable

with categories ‘Rare’ (not exposed to any direct or Results and discussion
potential threat), ‘Near Threatened’ (likely to become
at risk of extinction), ‘Vulnerable’ (high risk of Collection intensity
extinction), ‘Endangered’ (very high risk of extinc-
tion) and ‘Critically Endangered’ (extremely high risk The collection intensity for indigenous grass species is
of extinction) will be presented. The conservation shown in Fig. 1. Collection intensity records, as
status, however, applies only to species within South presented here, are not linked to species diversity as
Africa’s borders and is thus not a global assessment. the latter is determined by vegetation surveys of plant

Fig. 1 Collection intensities of Poaceae indigenous to South SANBI) and PHYTOBAS (South African National Vegetation
Africa, Lesotho and Eswatini as recorded in the Botanical Data Archive) datasets mapped on the bioregions of Rutherford
Database of southern Africa (BODATSA; maintained by et al. (2006)

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communities. For this study, BODATSA included Resource 1). Pooideae contains the largest number of
records documented since 1802 and PHYTOBAS world species (3968 spp.) but Panicoideae the largest
records from 2003 to 2009. number of species indigenous to SA (256 spp.).
It is evident that the very high collection intensities Furthermore, only 20% of the world genera (151
([ 151 spp./QDGC) were made in the Central genera) and 6% of world species (685 spp.) are found
Bushveld bioregion (Rutherford et al. (2006) as shown in SA. Even though this is a low number of species,
in Fig. 2). Moreover, collection efforts were high in many have proven economic forage value worldwide,
the 2528CA QDGC (red square with [ 201 spp./ e.g. Anthephora pubescens, Chloris gayana, Digitaria
QDGC), indicating a possible biased collection eriantha and Eragrostis curvula, highlighting the
approach close to Pretoria, Gauteng. Collection possible wealth of genetic resources contained in
intensities ranging from 51 to 150 spp./QDGC are especially the tribe Paniceae.
recorded in the Central Bushveld-, Lowveld-, Indian As mentioned previously, the largest number of
Ocean Coastal Belt- and the Fynbos bioregions. The grass species is contained in Panicoideae resulting
lower intensities (\ 100 spp./QDGC) are relatively mainly from the high number of species in Paniceae
well distributed over the study area, with no record- (150 spp.). Pentameris P.Beauv. is the largest genus
ings, however, in some of the central parts of the arid with 75 species followed by Eragrostis Wolf with 65
region. When the SANBI’s grass herbarium collec- species (Table 6). Pentameris is found in more
tions are compared to the legume collections (Tryts- temperate regions, i.e. mainly in the Cape Floristic
man et al. 2011), it is evident that the former are larger Region (Barker 1993), whereas Eragrostis is found in
(± 40 139 records) than the latter (± 27 618 records) tropical and subtropical regions (Truter et al. 2015)
despite the larger number of indigenous legume (also refer to Online Resource 2 for tropical, subtrop-
(± 1455 intraspecific taxa of which ± 12% are trees) ical and temperate regions of SA). The importance of
versus grass species (± 685 species). the Panicoideae is highlighted by the fact that both Zea
mays L. and Sorghum Moench are recognized species
Phylogenetic classification within the Andropogoneae.
Table 6 denotes the genera currently conserved in
Worldwide the Poaceae is here treated as containing the SA-NFG. This genebank conserves at present 73
12 subfamilies, 52 tribes, 768 genera and 11,506 genera and 162 indigenous grass species, i.e. 48% and
species (Soreng et al. 2017). The statistics of the 24% of the total number of taxa respectively. The low
grasses as a whole is compared with the indigenous number of grass species presently conserved is a
grass diversity of SA in Table 4. Grasses, indigenous particular concern if the high risk of continued loss of
to SA, consist of eight subfamilies, 25 tribes, 151 genetic material as described by Pengelly and Maass
genera and 685 species. The basal lineage subfamilies (2018) is taken into account. However, the renewed
Anomochlooideae, Pharoideae and Puelioideae are interest from South African policy makers in restoring
not represented in SA. The subfamilies of the BOP this genebank as a centre of excellence is encouraging
clade (Bambusoideae, Oryzoideae and Pooideae) are and strengthen the aim to improve the collection and
all present in SA, but not Micrairoideae of the conservation efforts for potentially important indige-
PACMAD clade. The PACMAD clade consist of nous grass species.
subfamilies Panicoideae, Aristidoideae, Chlori-
doideae, Micrairoideae, Arundinoideae and Dantho- Subfamily distribution
nioideae. Differences in the formal classification of
Poaceae as followed by Gibbs Russell et al. (1990) and The distribution patterns, i.e. the presence or absence
Fish et al. (2015), compared to that of Soreng et al. of subfamilies in QDGCs of the study area, for the
(2017), is outlined in Table 5. eight subfamilies represented in SA are shown in
Bambusoideae has the poorest representation of Fig. 3. Aristidoideae, Panicoideae and Chloridoideae
species in SA (Table 4). Given that Bambusoideae is covers most of the bioregions with the latter having
the only grass lineage to have diversified in forests more coverage in especially the central regions of
(Sungkaew et al. 2009), this is expected with forests South Africa. The presence of Panicoideae is infre-
being the smallest biome in the study area (Online quent in Namaqualand, Bushmanland and Karoo

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b Fig. 2 Bioregions of South Africa, Lesotho and Swaziland Growth form


(Rutherford et al. 2006) to be used as reference map
The majority of grass species in SA are described as
tufted (401 spp.) followed by rhizomatous/tufted (105
regions (refer to Fig. 2) and Aristidoideae has a low spp.) and rhizomatous (59 spp.) (Fig. 4). Linder et al.
presence in the central parts of the arid regions. (2018) states that the tufted growth form, stemming
According to Fish et al. (2015), Panicoideae occurs in from tillering, probably evolved within Poaceae. This
more mesic habitats whereas Chloridoideae occurs in growth form was found, however, to be less tolerant to
drier saline habitats. heavy grazing compared to rhizomatous or stolonif-
erous grasses by Reynolds (1995). The tufted growth
Figure 3 further shows that Oryzoideae and Pooi-
form is nonetheless an attribute of the majority of grass
deae have similar distribution patterns, covering the
pasture species, particularly those mentioned earlier as
Cape Floristic Region, Succulent Karoo and a large
key pasture species. Rhizomes (underground stems)
part of the Grassland biome (Online Resource 1).
are also a valuable survival trait, in not only protecting
Bambusoideae occurs only in the Drakensberg Grass-
the plant from trampling (Rechenthin 1956) or being
land bioregion whereas Arundinoideae occurs mostly
correlated with drought resistance (Zhou et al. 2014)
in Central Bushveld, Lowveld and Indian Ocean
but also having a regenerative ability (Zwerts et al.
Coastal Belt bioregions (refer to Fig. 2). The high
2015). Da Silva et al. (2015) argues that complemen-
presence of Arundinoideae in the winter rainfall zone
tary growth habits of C4 tropical grasses, i.e. rhizoma-
described by Gibbs Russell (1986) has been invali-
tous grasses that occupy a lower horizontal stratum
dated since the addition of the Oryzoideae and
and tufted grasses a higher vertical stratum, result in
Danthonioideae resulted in the removal of Ehrharta
coexistence and allows for greater grass diversity.
Thunb. and Pentameris from Arundinoideae. Lastly,
Little information on the hemicryptophyte growth
Danthonioideae is found in the Cape Floristic Region,
form (buds present at or near the soil surface) exists for
Succulent Karroo biome (Online Resource 1) and the
these indigenous species, although it is accepted that it
Drakensberg Grassland bioregion.

Table 4 Statistics of tribes, genera and species of Poaceae indigenous to South Africa, Lesotho and Eswatini (SA) compared to the
world Sourced from Fish et al. (2015) and Soreng et al. (2017)
Subfamily Tribe World Tribe SA Genera World Genera SA Species World Species SA

Anomochlooideae 2 – 2 – 4 –
Pharoideae 1 – 3 – 12 –
Puelioideae 2 – 2 – 11 –

BOP clade
Oryzoideae 4 2 19 4 115 28
Bambusoideae 3 2 125 2 1670 2
Pooideae 15 6 202 18 3968 58

PACMAD clade
Aristidoideae 1 1 3 3 367 42
Panicoideae 13 6 247 65 3241 256
Arundinoideae 2 2 14 4 40 6
Micrairoideae 3 – 8 – 184 –
Danthonioideae 1 1 19 10 292 114
Chloridoideae 5 5 124 45 1602 179
Total 52 25 768 151 11,506 685

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Table 5 Comparison of the classification of Poaceae indigenous to South Africa, Lesotho and Eswatini followed by Gibbs Russell
et al. (1990) and Fish et al. (2015) compared to that of Soreng et al. (2017)
a b a
Gibbs-Russell et al. (1990) Fish et al. (2015) Soreng et al. (2017)
Subfamily Tribe Subfamily Tribe Subfamily Tribe

Pooideae Triticeae Bambusoideae Bambuseae Oryzoideae Ehrharteae


Brachypodieae Olyreae Oryzeae
Bromeae Ehrhartoideae Ehrharteae Bambusoideae Arundinarieae
Aveneae Oryzeae Bambuseae
Meliceae Pooideae Brachypodieae Pooideae Meliceae
Poeae Bromeae Stipeae
Bambusoideae Oryzeae Meliceae Brachypodieae
Olyreae Poeae Bromeae
Centotheceae Stipeae Triticeae
Ehrharteae Triticeae Poeae
Bambuseae Aristidoideae Aristideae Aristidoideae Aristideae
Arundinoideae Stipeae Arundinoideae Arundineae Panicoideae Tristachyideae
Arundineae Danthonioideae Danthonieae Centotheceae
Danthonieae Panicoideae Andropogoneae Paniceae
Aristideae Arundinelleae Paspaleae
Chloridoideae Pappophoreae Paniceae Arundinelleae
Chlorideae Paspaleae Andropogoneae
Panicoideae Paniceae Tristachyideae Arundinoideae Molinieae
Arundinelleae Centotheceae Arundineae
Andropogoneae Chloridoideae Centropodieae Danthonioideae Danthonieae
Maydeae Cynodonteae Chloridoideae Centropodieae
Eragrostideae Triraphideae
Triraphideae Eragrostideae
Zoysieae Zoysieae
Cynodonteae
a
Tribes in phylogenetical order
b
Tribes in alphabetical order

is common in grasses (Linder et al. 2018). This trait Karoo, Grassland, Savanna and Indian Ocean Coastal
can contribute to survival during unfavourable condi- Belt biomes and Oplismenus spp. in the Lowveld and
tions such as seasonal drought, cold, fire or heavy Indian Ocean Coastal Belt bioregions (refer to Fig. 2
grazing when plants can regrow from the base after and Online Resource 1). A review on the concept of
conditions improves (Linder et al. 2018). grazing lawns, i.e. a short-stature grassland commu-
In general, most grass growth forms have a nity type, persisting and spreading under heavy
relatively wide distribution throughout the study area. grazing (Hempson et al. 2014) affirms that certain
The exceptions are the cushion growth form (low ecotypes of Themeda triandra Forssk. and Digitaria
growing, mat forming at high altitudes) of the genus eriantha forms small cushion-like plants and dense
Pentameris (eight of the 75 spp.), the trailing form of stoloniferous or rhizomatous clonal mats under fre-
especially eight Panicum L. spp. and the three trailing quent grazing. This finding strengthens the call of Van
Oplismenus P.Beauv. spp. Pentameris is found mainly Wyk (1995) to formally label infraspecific genetic
in the Fynbos biome, Panicum spp. in the Nama-

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Table 6 Subfamilies, tribes and genera (number of species in phylogenetic classification of Soreng et al. (2017) for subfam-
brackets sourced from Fish et al. (2015)) of Poaceae indige- ilies and tribes. Taxa in bold indicate the largest (most
nous to South Africa, Lesotho and Eswatini following the speciose) group/s within the classification
Subfamily Tribe Genera

BOP clade
Oryzoideae Ehrharteae Ehrhartaab (23)
Oryzeae Leersiab (2) Oryzab (2) Prosphytochloaa (1)
Bambusoideae Arundinarieae Thamnocalamusa (1)
Bambuseae Oxytenanthera (1)
i
Pooideae Meliceae Melicaa (2) Streblochaete (1)
Stipeae Stipaa (2)
Brachypodieae Brachypodiuma (2)
Bromeae Bromusa (4)
Triticeae Hordeuma (1) Secalea (1)
Poeae Agrostisa (9) Anthoxanthuma (4) Calamagrostis (1) Catabrosa (1) Festucaa (8) Holcusa (1)
Helictotrichona (14) Koeleria (1) Poab (3) Polypogona (1) Puccinelliaa (2)
PACMAD clade
Aristidoideae Aristideae Aristidaab (23) Sartidia (2) Stipagrostisab (17)
Panicoideae Tristachyideae Danthoniopsisb (5) Loudetiab (5) Trichopteryx (1) Tristachyab (3)
Centotheceae Megastachya (1)
Paniceaecef Acrocerasb (1) Alloteropsisb (2) Anthephoraab (3) Brachiariab (16) Cenchrusb (1) Digitariaab
(25) Echinochloab (9) Entolasia (1) Eriochloab (4) Leucophrys (1) Megaloprotachneb (1)
Melinisab (8) Odontelytrum (1) Oplismenus (3) Panicumab(34) Paspalidiumb (2)
Pennisetum (7) Pseudechinolaena (1) Sacciolepis (6) Setariaab (12) Stenotaphrumb (2)
Stereochlaena (1) Tarigidiaa (1) Tricholaenaab (2) Urochloab (6)
Paspaleae Paspalumb (3)
Arundinelleae Arundinella (1)
Andropogoneaeeg Andropogonb (14) Arthraxon (1) Bothriochloab (3) Chrysopogonb (1) Cleistachneb (1)
Coelorachis (1) Cymbopogonab (6) Dichanthiumb (1) Diheteropogonb (2) Elionurusb (1)
Elymandra (1) Eriochrysis (2) Eulalia (2) Hackelochloa (1) Hemarthriab (1) Heteropogonb
(2) Hyparrheniab (20) Hypertheliab (1) Imperatab (1) Ischaemumb (2) Miscanthusb (2)
Monocymbiumb (1) Oxyrhachis (1) Phacelurus (1) Rhytachne (2) Rottboellia (1)
Schizachyriumb (6) Sehima (2) Sorghastrumab (2) Sorghumb (2) Themedab (1)
Trachypogonb (1) Urelytrum (1)
Arundinoideae Molinieae Elytrophorus (1) Phragmites (2) Styppeiochloa (1)
Arundineae Dregeochloaa (2)
Danthonioideae Danthonieae Capeochloaa (3) Chaetobromusab (1) Geochloaa (3) Merxmuelleraa (4) Pentamerisa (75)
Pentaschistisa (3) Pseudopentamerisa (3) Schismusab (4) Tenaxiaa (5) Triboliuma (13)
Chloridoideae Centropodieae Centropodiaab (1) Ellisochloa (1)
Triraphideae Triraphisa (4)
Eragrostideaedh Catalepis (1) Cladoraphisa (2) Diandrochloa (2) Enneapogonab (6) Eragrostisab (65)
Fingerhuthiaab (2) Pogonarthriab (1) Schmidtiab (2) Stiburus (2) Tetrachneb (1)
Zoysieae Spartina (1) Sporobolusab (34)

123
Genet Resour Crop Evol

Table 6 continued
Subfamily Tribe Genera

Cynodonteaec Acrachneb (1) Bewsiab (1) Brachychloa (2) Chlorisb (6) Coelachyrum (1) Ctenium (1)
Cynodonab (6) Dactylocteniumb (4) Dinebra (1) Eleusineb (2) Enteropogonb (2) Eustachysb
(1) Harpochloa (1) Leptocarydion (1) Leptochloab (5) Lepturusb (1) Lintoniab (1)
Lophacmea (1) Microchloab (2) Mosdeniaa (1) Odyssea (1) Oropetiumb (1) Perotis (1)
Polevansia (1) Rendlia (1) Schoenefeldiab (1) Tetrapogonb (1) Tragusab (3) Trichoneurab
(2) Tripogon (1)
a
Include endemic species
b
Genera conserved in the South African National Forage Genebank
Tribes with majority of species with cPioneer, dSubclimax, eClimax, fDecreaser, gIncreaser I, hIncreaser II
i
Temperate grass lineage

variants within especially species of potential eco- grasses (Gibson 2009) could in effect be an important
nomic significance. grass collection objective, where the focus is on
pasture development for temperate regions, especially
Photosynthetic pathway and grazing status for dairy farming.
The distribution of C3 and C4 grass species is shown
The photosynthetic pathway distinguished in the in Fig. 5. Species with the C3 pathway are widespread
subfamilies and tribes of Poaceae is shown in Table 7. in the Fynbos, Succulent Karoo biomes and the
The early-branching subfamilies (Oryzoideae, Bam- Drakensberg Grassland, Sub-Escarpment Grassland
busoideae and Pooideae) are shown to have a C3 bioregions (refer to Fig. 2 and Online Resource 1).
photosynthetic pathway, whereas the later-branched The central arid region has low occurrences of C3
Chloridoideae has a C4 photosynthetic pathway. grass species whereas the Kalahari Duneveld biore-
Interestingly, Bouchenak-Khelladi et al. (2010) found gion has none. Species with a C4 photosynthetic
molecular evidence that C4 photosynthesis (of at least pathway is found in all the bioregions of SA. Vogel
the subfamily Chloridoideae) may well have origi- et al. (1978) investigated the geographical distribution
nated in Africa. The majority of species of Aristi- of C3 and C4 grasses in southern Africa and concluded
doideae and Panicoideae are C4 whereas all species of that low temperatures during seasonal growth favour
Arundinoideae and Danthonioideae are C3. Tribes the C3 grasses in the regions mentioned above. The
with well-known pasture species i.e. Andropogoneae, exclusive presence of C4 in the tropical region (Online
Eragrostideae and Cynodonteae contains only C4 Resource 2) as described by Vogel et al. (1978) is,
species whereas Paniceae have a mixture of C3 (i.e. however, not evident in Fig. 5. C3 species such as
genus Panicum) and C4 species. The importance of C4 Agrostis L., Festuca L., Helictotrichon Besser (Poeae)
grasses in pasture production could lie in their ability and Pentameris (Danthonieae) were recorded in the
to transfer larger proportions of plant nitrogen to roots tropical regions of the study area (Online Resource 2).
in infertile environments (Long 1999), as well as The only known grass species in SA with both a C3 and
larger leaf area production in fertile and disturbed C4 subspecies, Alloteropsis semialata (R.Br.) Hitchc.
environments. This supports Linder et al. (2018) need special mentioning (Ellis 1974; Gibbs Russell
finding that grasses has the ability to colonize, persist 1983). Alloteropsis semialata (R.Br.) Hitchc. subsp.
and transform environments, properties that are the eckloniana (Nees) Gibbs Russ. has a C3 photosyn-
key to success. Furthermore, evidence presented by thetic pathway and A. semialata (R.Br.) Hitchc. subsp.
Linder et al. (2018) indicated that C4 plants have a semialata (R.Br.) Hitchc. a C4, suggesting an evolu-
higher carbon fixing efficiency over a range of habitats tionary reversion from C4 to C3 (Ibrahim et al. 2009).
when soil resources are limited compared to C3 types. Within Panicum, a genus containing important forage
However, the higher forage value in terms of crude crops, Ellis (1988) distinguished 11 Panicum spp.
protein content and digestibility in C3 compared to C4 having a C3 and 23 with C4 photosynthetic pathway.

123
Genet Resour Crop Evol

Fig. 3 The distribution patterns for Poaceae subfamilies indigenous to South Africa, Lesotho and Eswatini in phylogenetic order
according to Soreng et al. (2017), mapped on the bioregions of Rutherford et al. (2006)

123
Genet Resour Crop Evol

450

400 401

350
Number of grass species

300

250

200

150

105
100
59
50
18
1… 13 12 8 8 6 6 6 4 3 3 3 3 3 2 1 1
0

Hydrophyte/trailing
Stoloniferous

Stoloniferous/tufted

Cushion/tufted
Tufted

Cushion

Hydrophyte/stoloniferous/tufted

Tufted/trailing

Geophytic
Trailing

Rhizomatous/stoloniferous

Hydrophyte/rhizomatous/stoloniferous

Hydrophyte/tufted

Rhizomatous/stoloniferous/tufted

Hydrophyte/rhizomatous

Hydrophyte/rhizomatous/stoloniferous/tufted

Rhizomatous/woody
Hydrophyte

Hydrophyte/rhizomatous/tufted
Rhizomatous
Rhizomatous/tufted

Fig. 4 Growth forms of Poaceae indigenous to South Africa, Lesotho and Eswatini. Sourced mainly from Gibbs Russell et al. (1990)

Pau et al. (2012) pointed out that the evolutionary Andropogoneae are well presented in all biomes but
history of Poaceae is important for understanding the narrowly presented in the drier areas namely the
C3 and C4 functional diversity of grasses, as this will Nama-Karoo and Succulent Karoo biomes (Online
affect their responses to global change. Resource 1). The ecological status as defined by
A comparison of the recorded successional status of Forani et al. (1978) and Van Oudtshoorn (2012)
tribes (Van Oudtshoorn 2012) shows that Paniceae and indicate that the high number of Decreaser species
Cynodonteae contain the largest number of species present in Paniceae further underlines this tribe’s
with pioneer status, whereas Paniceae and Andro- forage value, i.e. 47% of indigenous species with
pogoneae contain the largest number with climax known preferential grazing status are grouped here
status (Table 7). Pioneer species are usually annuals, (Table 7). Decreasers are defined as grasses abundant
growing in disturbed habitats or unfavourable condi- in good veld and will decrease when over- or
tions whereas climax species are perennials, growing undergrazed, whereas Increasers will increase under
only when normal, optimal growth conditions prevail any type of mismanagement. Andropogoneae and
(Van Oudtshoorn 2012). Panicoideae distinctly con- Eragrostideae contain respectively the highest number
tains most climax species compared to other subfam- of Increaser I and Increaser II species.
ilies and thus should be the focus for further assessing
grass genetic resources with pasture potential, espe-
cially within the tribes Paniceae and Andropogoneae.
Grass species belonging to Paniceae and

123
Genet Resour Crop Evol

Table 7 The number of species within Poaceae subfamilies from Gibbs Russell et al. (1990) and successional and
and tribes indigenous to South Africa, Lesotho and Eswatini ecological grazing status (Van Oudtshoorn 2012)
using a C3 and/or C4 photosynthetic pathway sourced mainly
Subfamily Tribe C3 C4 Pioneer Subclimax Climax Decreaser Increaser Increaser Increaser
I II III

BOP clade
Oryzoideae Ehrharteae 23 2 1 2
Oryzeae 5
Bambusoideae Arundinarieae 1
Bambuseae 1
Pooideae Meliceae 3 1 1
Stipeae 2
Brachypodieae 2
Bromeae 4 1
Triticeae 2
Poeae 45 1 1 2 2 2

PACMAD clade
Aristidoideae Aristideae 2 40 4 3 5 2 9 3
Panicoideae 14 2 1
Tristachyideae
Centotheceae 1
Paniceae 23 127 13 3 25 21 7 16
Paspaleae 3 1
Arundinelleae 1 1 1
Andropogoneae 87 5 27 7 20 5 2
Arundinoideae Molinieae 4 1
Arundineae 2
Danthonioideae Danthonieae 114 1 3 3 1 2 2
Chloridoideae Centropodieae 2 1
Triraphideae 4 1 1
Eragrostideae 84 7 11 5 2 1 25 2
Zoysieae 35 2 3 2 1 1 6 1
Cynodonteae 54 10 3 6 5 2 14 1

Endemism and conservation concern Danthonioideae (found mainly in the Cape Floristic
Region and Succulent Karoo biome (see Online
Figure 6 shows the collection intensity for the 257 Resource 1) contributes to nearly half of the total
grass species endemic to SA. The highest number of number of endemic grass species in SA. Pentameris
endemic species per QDGC is recorded in the Cape accounts for 28% of endemic species followed by
Floristic Region and in the Drakensberg Alpine Centre Ehrharta (9%), Eragrostis (7%) and Tribolium (5%).
(Van Wyk and Smith 2001; Rutherford et al. 2006). In Pentameris is mainly found in the Fynbos biome and
terms of the presence of endemic species in the study Drakensberg Grassland bioregion, Ehrharta in the
area, the Upper and Lower Karoo, Bushmanland and Fynbos and Succulent Karoo biome, Eragrostis in
Lowveld are the main bioregions (refer to Fig. 2) most parts of the study area and Tribolium in the
containing the smallest number of endemic species. Fynbos and Succulent Karoo biome (Fish et al. 2015).

123
Genet Resour Crop Evol

are found respectively in the tropical region


(Online Resource 2) and the Mopane bioregion
of the study area. Secale strictum (J.Presl) J.Presl
subsp. africanum (Stapf) K.Hammer, is a peren-
nial wild rye found in Renosterveld of the
western mountain Karoo (Fish et al. 2015) and
within the Hantam-Roggeveld Centre (Van Wyk
and Smith 2001). Helictotrichon quinquesetum
(Steud.) Schweick., only known from the slopes
of Table Mountain, Cape Town (Fish et al.
2015), is the only grass species listed as possibly
extinct. It is evident from Table 8 that the
majority of grass species with a conservational
concern are found in the Cape Floristic Region,
followed by the Hatam–Roggeveld Centre.
Habitat loss is identified as the major threat to South
African plants, i.e. infrastructure development, urban
expansion, cultivation of crops, commercial afforesta-
tion and mining (SANBI 2017). In terms of the
conservation of genetic resources for possible future
use, it is suggested that representative seed samples
are collected from these species and stored in the SA-
NFG. The screening and characterisation of these
genetic resources will allow for re-introduction when
certain populations go locally extinct. In addition,
these efforts will allow these genetic resources to be
included into breeding programs that can produce
more adapted species or for rehabilitation of degraded
Fig. 5 The distribution of C3 and C4 photosynthetic pathways rangelands.
in Poaceae indigenous to South Africa, Lesotho and Eswatini.
Sourced mainly from Gibbs Russell et al. (1990) and mapped on
the bioregions of Rutherford et al. (2006)
Conclusion
Pentameris and Tribolium are considered having a
The important role that members of the Poaceae plays
lower grazing value than Ehrharta (Van Oudtshoorn
in sustainable pasture production systems compels the
2012).
SA-NFG to conserve SA’s indigenous grass genetic
The conservational assessment for grass species resources, not only those used in current pasture
published in the Red List of South African Plants systems, but also genetic material that could be
(SANBI 2017) is listed in Table 8 together with beneficial in future breeding programs and/or adapted
regions or centres of endemism (sensu Van Wyk to specific agro-ecological conditions. A modern
and Smith 2001). The genus Pentameris holds a classification framework was therefore used to docu-
true conservational concern with 24 species listed, ment indigenous grass species, recorded in various
present in all categories. There are two Panicum southern African taxonomic reviews and botanical
spp. and one Secale L. sp., both important genera databases. Linking various attributes with phyloge-
in pasture production also listed, respectively as netic classification and vegetation types assisted in
rare and critically endangered. Panicum sancta- distinguishing taxa with pasture potential and to
luciense and Panicum dewinteri, both perennials, prioritise future collection and conservation efforts.

123
Genet Resour Crop Evol

Fig. 6 The collection intensity for the endemic grass species present in South Africa, Lesotho and Eswatini. Sourced from Fish et al.
(2015) and mapped on the bioregions of Rutherford et al. (2006)

Results showed that the inclusion of PHYTOBAS these arid regions, containing important pasture
(South African National Vegetation Data Archive) species such as Chloris, Cynodon and Eragrostis,
added valuable data since 13 additional QDGCs were should be considered. The majority of grass species in
added to the dataset. Attention is drawn to the value of SA are tufted, an attribute of the majority of key grass
historical vegetation data and the proposed call for pasture species. Tribes with well-known pasture
online open access is supported. The collection species contains only C4 species (Andropogoneae,
intensity map shows that the central Bushveld has Eragrostideae and Cynodonteae) whereas Paniceae
high collections, but that in large parts of the central have a mixture of C3 and C4 species (i.e. genus
arid region no collections were done. There are eight Panicum). Species with a C4 photosynthetic pathway
subfamilies, 25 tribes, 151 genera and 685 species is found in all the bioregions of SA whereas C3 species
present in SA. Subfamilies Anomochlooideae, Phar- have low occurrences in the central arid region.
oideae, Puelioideae (basal lineage) and Micrairoideae Panicoideae contains more climax species compared
(PACMAD clade) are not represented in SA. Only 6% to other subfamilies, especially within the tribes
of world grass species (i.e. 685 spp.) are found in SA, Paniceae and Andropogoneae. The 257 endemic grass
with Panicoideae having the largest number of species species found largely in the Cape Floristic Region and
(256 spp.). Aristidoideae, Panicoideae and Chlori- in the Drakensberg Alpine Centre need an in depth
doideae are represented in most of the bioregions assessment to determine the role the SA-NFG plays in
whereas Bambusoideae is found only in one bioregion, their conservation as possible future pasture genetic
namely the Drakensberg Grassland. The infrequent resources. This is an urgent outcome for the 24 species
presence of Panicoideae in the western and central arid of Pentameris that holds a true conservational con-
regions should be taken into account when focusing on cern. The collection of viable seed of two Panicum
the collection of potentially drought tolerant grass spp. and one Secale sp., listed respectively as rare and
species. Instead, the presence of Chloridoideae in critically endangered and the possible extinct Secale

123
Genet Resour Crop Evol

Table 8 Grass species and infraspecific taxa on the ‘Red List endemism (sensu Van Wyk and Smith 2001) the particular
of South African Plants’ in order of the least to highest risk of taxon is endemic, or if more widespread, confined to in the
extinction (SANBI 2017). The superscript following some study area
names indicates to which specific local region or centre of
Rare Vulnerable (continued)

Capeochloa setaceaCFR Elytrophorus globularis


Dregeochloa calviniensis Helictotrichon barbatumSKR
Panicum sancta-lucienseMC Helictotrichon namaquenseKBC
CFR
Pentameris caulescens Helictotrichon rogerellisiiCFR
CFR
Pentameris clavata Oryza longistaminata
Pentameris glacialisCFR Pentameris calcicola var. hirsutaCFR
CFR
Pentameris hirtiglumis Pentameris longiglumis subsp. longiglumisCFR
CFR
Pentameris holciformis Pentameris longipesAC
Pentameris horridaCFR Pentameris trifidaCFR
CFR
Pentameris longiglumis subsp. gymnocolea Sartidia jucundaSBC
CFR
Pentameris swartbergensis Tribolium ciliareCFR
Pentameris unifloraCFR
Near threatened Endangered

Eulalia aurea Helictotrichon roggeveldenseHRC


PC
Oxyrhachis gracillima * Pentameris bachmanniiCFR
SBC
Panicum dewinteri Pentameris dentataHRC
CFR
Pentameris aspera Pentameris eckloniiCFR
Pentameris calcicola var. calcicolaCFR Pentameris pholiuroidesCFR
Pentameris limaKBC Pentameris scandensCFR
Stipagrostis geminifoliaGC

Vulnerable Critically endangered

Capeochloa cincta subsp. sericeaAC Pentameris barbata subsp. orientalisCFR


DAC
Catabrosa drakensbergense Pentameris elegansCFR
Ehrharta setacea subsp. unifloraCFR Pentameris ellisiiCFR
CFR
Ellisochloa papposa Secale strictum subsp. africanumHRC
Tribolium pleuropogonCFR
Helictotrichon quinquesetum (possibly extinct)CFR
Rare, not exposed to any direct or potential threat; Near Threatened, likely to become at risk of extinction; Vulnerable, high risk of
extinction; Endangered, very high risk of extinction; Critically Endangered, extremely high risk of extinction; AC, Albany Centre;
CFR, Cape Floristic Region; DAC, Drakensberg Alpine Centre; GC, Gariep Centre; HRC, Hantam–Roggeveld Centre; KBC,
Kamiesberg Centre; MC, Maputaland Centre; PC, Pondoland Centre; SBC, Soutpansberg Centre; SKR, Succulent Karoo Region
*In the study area confined to the centre, but not endemic as it also occurs elsewhere in Africa/Madagascar

strictum subsp. africanum is a critical undertaking for production, mitigate the possible effect of climate
the SA-NFG. change on the valuable grass genetic resources, and
consequently pasture production. It is proposed that a
The SA-NFG conserve at present only a quarter of strategy be developed for the SA-NFG to collect and
indigenous grass species with the current collection conserve seed of Paniceae since this tribe contains
already facing serious risks. This will prompt decision valuable pasture grass species, thus focusing on
makers to reinvest in the SA-NFG, focusing on speciose subtropical genera such as Anthephora,
conserving genetic resources for improved animal Brachiaria, Digitaria, Panicum and Setaria.

123
Genet Resour Crop Evol

Furthermore, temperate genera containing important Compliance with ethical standards


pasture species i.e. Bromus, Hordeum and Festuca as
Conflict of interest The authors declare that they have no
well as endemic species with grazing value, such as conflict of interest.
Ehrharta, should also be the focus of seed collection
efforts by the SA-NFG. The need for more emphasis
on the description and formal recognition of
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