Professional Documents
Culture Documents
Gabriella Rizzo
Learning Objectives
True bacteria
• Mycobacterium, Actinomyces, Nocardia,
Streptomyces
Spirochete
• Gram+ bacilli
• Aerobes (Listeria, Corynebacterium)
• Anaerobes (Clostridium) • Borrelia, Treponema, Leptospira
• Gram+ cocci
• Staphylococcus, Streptococcus, Enterococcus
• Gram- cocci Mycoplasmas
• Aerobes (Neisseria)
• Gram-bacilli
• Aerobes (Escherichia, Klebsiella, Salmonella, • Mycoplasma, Ureaplasma
Proteus, Shigella, Yersinia, Pseudomonas,
Haemophilus, Brucella, Bordetella)
• Anaerobes (Fusobacterium, Bacteroides) Rickettsia and Chlamydiae
• Gram-vibrios
• Vibrio, Campylobacter, Helicobacter
• Rickettsia, Chlamydia, Coxiella
Infectious Diseases
Infective agents Host
Bacteria
• Latent pathogens
• Lie dormant in a normal host but cause disease when host defences are compromised
Antibiotics
Mechanism of action
0 Bactericidal death
0 Note: high concentrations of some bacteriostatic agents are also bactericidal, whereas low
concentrations of some bactericidal agents are bacteriostatic
Mechanism of action
inhibit addition
of subunit to the backbone
DD transpeptidase
2. Broad-sprectrum penicillin
0 Active on Gram –ve rods (E. coli, Salmonella, Shigella, H. influenzae
Ampicillin
0 Well excreted in the bile and urine
0 Low GI absorption , ↓ by food
0 Side effects: rash
Amoxicillin
0 Better GI absorption
Amoxicillin-clavulanic acid
o Clavulanic acid inactivates β-lactamases
o Staph. Aureus, E. coli, Haemophilus influenzae, Streptococcus pneumoniae
Other β-Lactams
0 Antipseudomonal penicillins
0 Pseudomonas, Proteus, bacterioides
0 Piperacillin/ureidopenicillin (TAZOCIN)
0 Carbapenem
0 Gram –ve and +ve, aerobes and anaerobes
0 Imipenem
0 Meropenem
0 Aztreonam
0 Pseudomonas aeruginosa, Neisseria meningitidis,
Haemophylus influenzae
Cephalosporines
0 Spectrum: Broad-spectrum (Penicillinase-producing, methicillin-susceptible Staphilococci, Streptococci)
0 Pharmacology similar to penicillin
0 Side effects
0 hypersensitivity and 0.5-6.5% of penicillin-sensitive patients will also be allergic to cephalosporine
0 Antibiotic-associated colitis (Cl. difficile)
Gram - Gram +
Vancomycin
0 Per os in antibiotic associated-colitis
0 Side effects
0 Rash if given faster then 60 min (red man syndrome)
0 nephrotoxicity
Teicoplanin
Mechanism of action
2. Inhibition of protein synthesis
Aminoglycosides Macrolides
(30S Subunit-irreversibly) (50S subunit)
Initiation of synthesis protein chain elongation
Ribosome
Tetracyclines Chloramphenicol
(30S-reversibly) (50S-reversibly)
Death
Macrolides
Erythromycin
0 Absorption reduced by food
0 Spectrum: Gram +ve and Mycoplasma,
0 Accumulates in macrophages
Campylobacter, Legionella, Mycobacteria ( 0 Side effects:
0 ++ nausea and vomiting, hepatotoxic, ototoxic
Chlarytromycin
0 Clarithromycin
0 Mechanism of action 0 Second line treatment for TB, atypical pneumonias
0 Inhibition of protein synthesis 0 Elimination: urine
0 Pharmacokinetic
0 No GI absorption, IV administration
0 Elimination: renal (accumulation in renal failure)
0 Side effects
0 Ototoxicity (reversible) and nephrotoxicity are dose related
0 Gentamicin
0 Streptomycin
0 Amikacin
0 Tobramycin
Tetracyclines
0 Spectrum: Intracellular bacteria
0 Chlamydia, Rickettsia, Brucella, Spirochete,
Borrelia
0 Pharmacokinetic
0 Absorption is reduced by antiacids, milk
0 Side effects
0 ↑Hepatic impairment, exacerbate SLE, ↑
muscle weakness in Myastenia gravis
0 Avoid in pregnancy
Tetracycline
Doxycycline
Malaria (treatment and prophylaxis)
Mechanism of action
3. Inhibition of nucleic acid synthesis or activity
Topoisomerases IV
a. Quinolones DNA girase
negative supercoiling of DNA
b. Rifampicin
DNA-dependent-RNA polymerase
Cell death
c. Metronidazole
DNA damage
Quinolones
0 Spectrum: broad and bactericidal antibiotics
0 Quinolones and Fluoroquinolones (fluoro group attached the central ring system at the 6-position)
0 Second line treatment for TB
0 Mode of action:
0 inhibit the bacterial DNA girase (Gram–ve) or the Topoisomarases IV enzymes (Gram+ve), thereby inhibiting DNA replication
and transcription
0 enter cells easily → used also to treat intracellular pathogens such as Legionella and Mycoplasma
0 Resistance
0 efflux pumps (↓intracellular drug concentration)
0 plasmid-mediated resistance (proteins that bind to DNA gyrase)
0 mutations in DNA gyrase or topoisomerase IV genes(↓effectiveness)
0 Side effects
0 spontaneous tendon ruptures or damage, especially with the concurrent use of a systemic steroids
0 Convulsions
Folic acid
(SYNTHESIS)
-coenzyme
Sulfonamides
Trimethoprim
Linezolid
Gram +ve, MRSA and VRSA
PO and IV
Side effects: thrombocytopenia, anaemia
(reversible)
Pharmakinetics
1. Absorption
2. Distribution
3. Penetration
4. Metabolism
4. Elimination
Pharmakinetics
Absorption
0 Oral (pills, liquid form)/intramuscolar/intravenous administration
Aminoglycosides: not absorbed in the GUT so only IV or IM
Benzylpenicillin is inactivated by gastric acids
0 Distribution
0 The serum concentration of antibiotic must exceed the minimum concentration to inhibit bacterial
growth (MIC)
0 Site of infection
0 Combination
0 Prevent resistance
0 Synergistic or addictive activity
0 Multiple potential pathogens
History presenting complaint
Night
sweats
Weight
Headache loss
Fever
Lymph-
Diarrhoea
adenopathy
Cough Rash
INFECTION-CLASSIFICATION
Acute
Rapid onset
short term
relatively severe course
Chronic
Slow onset
long-term or lifelong (HBV, HCV, HIV)
Milder course
Localized
confined to identified site
Localized symptoms such as redness, swelling & pain
Systemic
involves more systems/whole body
Systemic symptoms include fever, fatigue, headache, etc
Septic screen
0 The septic screen combines clinical assessment with laboratory analysis and imaging to identify
the source of infection.
0 The full screen may not be required if there is an obvious focus of infection
Septic screen
Basic RX tests
(CXR, PFA, Ultrasound, CT brain)
Blood tests
(FBC, Bioprofile, CRP, ESR,
Coagulation, Ig)
Septic screen
Physical examination
History (presentation)
Case 1
A 25 year old student is brought to Accident and Emergency department with a 1
day history of severe headache, neck pain, fever and drowsiness. Her flatmate is
with her. The headache was of gradual onset and is associated with nausea, vomit
and photophobia. She had a recent sore throat and runny nose. On admission she is
drowsy, with no rash; temperature is 39.6°C, HR 120/min and BP 95/60.
Diagnosis?
Acute or chronic?
Systemic or localized?
Which bacteria/group of bacteria is most likely to cause this?
IV or PO?
Acute Meningitis
Presentation
Examination
(in hours or days)
Bacterial
Viral
Fungal
Meningococcal meningitis
Benzylpenicillin
Listeria meningitis
amoxicillin/ampicillin+ gentamicin
Case 1
A 25 year old student is brought to Accident and Emergency department with a 1
day history of severe headache, neck pain, fever and drowsiness. Her flatmate is
with her. The headache was of gradual onset and is associated with nausea, vomit
and photophobia. She had a recent sore throat and runny nose. On admission she is
drowsy, with no rash; temperature is 39.6°C, HR 120/min and BP 95/60.
Diagnosis? Meninigitis
Acute or chronic? Acute, high risk, high mortality
Systemic or localized? Localized→→systemic
Which bacteria/group of bacteria is most likely to cause this? Str. pneumoniae
IV or PO? Severe infection, pt drowsy→→IV ceftriaxone
Adjust treatment after microbiology results of blood culture and CSF analysis
Case 2
A 37 year old teacher presents to the Accident and Emergency department with a 3 day
history of fever, rigors and right sided chest pain. He has being previously healthy but 3 days
ago he started to feel unwell with cough, green sputum and progressive chest pain, worse in
inspiration. On examination his temperature is 38.5°C, HR 115/min and BP 125/80 mmHg, RR is
24/min. On percussion there is dullness over the right lower lobe and on auscultation there is
reduction of air entry and coarse crackles.
Diagnosis?
Acute or chronic?
Systemic or localized?
Which bacteria/group of bacteria is most likely to cause this?
IV or PO?
Pneumonia
0 Inflammation of the lungs with exudation into the alveoli
0 The signs of pneumonia are referred to clinically as a “consolidation”
Symptoms Signs
• Reservoir: URT
• Route of transmission: airborne
• Epidemiology: children <5years old, splenectomy, alcoholism
• Presentation: similar to S. pneumoniae , but less severe
• Immunization: Hib vaccine routinely done in pre-school years
Atypical pneumonias
3. Mycoplasma Pneumoniae
0 Endocarditis (Staphylococcus, streptococci and enterococci; Candida albicans, Chlamydia trachomatis, Brucella,
Coxiella, HACEK (oral Gram-)
flucloxacillin ( or benzylpenicillin )+ gentamicin for 4 to weeks
0 If penicillin allergy or MRSA: vancomycin + rifampicin + gentamicin