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AU 2021107205 A4
(19) AUSTRALIAN PATENT OFFICE
(54) Title
DEEP LEARNING BASED SYSTEM AND METHOD FOR AUTOMATIC IDENTIFICATION
OF COVID-19 REGIONS ON CT-IMAGES
(71) Applicant(s)
Subhalakshmi R.T;Appavu alias Balamurugan Subramanian;Sasikala S
(72) Inventor(s)
R. T., Subhalakshmi;Subramanian, Appavu alias Balamurugan;S., Sasikala
Preprocessing
Lesion Attention
Individual-level diagnosis
Performance Analysis
2021107205
Corona virus 2019 (COVID-19), which is brought about by the serious intense
breathing disorder Covid 2, arose in December 2019 and quickly formed into a
worldwide episode. Corona virus presents as an intense respiratory plot contamination
disorder and is profoundly irresistible. Sick people with this disease possess a higher
death rate. By April 20, 2020, more than 84,000 corona-affected representatives have
been affirmed in China and above 2.30 million representatives all around the world. The
World Health Organization first decided this outbreak was a normal wellbeing disaster of
worldwide consideration and consequently an overall pandemic. The regular clinical
qualities of COVID-19 cases incorporate fever, respiratory side effects, pneumonia,
diminished white platelet (WBC) tally, or diminished lymphocyte check.
Cutting edge CNN termed Mobile Net and prepared without any preparation
to research the significance of the separated characteristics for the classification part.
Dark Net structure was used in this investigation as a classifier for the YOLO real-time
target identification framework. Also, 17 layers of convolution were carried out and
diverse sifting was performed on every layer. Proposed CoroNet, an extensive CNN
structure to naturally distinguish corona virus contamination from lung X-beam pictures.
The suggested system depends on Xception design which is already prepared on
ImageNet data and prepared start-to-finish on a data sequenced by collecting corona virus
and alternate lung pneumonia X-beam images from diverse publicly accessible data sets.
Drawbacks of Existing state-of-art and how the invention addresses the drawbacks
The method to detect the corona virus using a novel dual-branch combination
network is proposed, this method comprises the following
• The method as claimed in claim 1, the detection of the COVID-19 at an early stage
is useful since the lesions in the beginning phase are normally unobtrusive and
hard to distinguish. The proposed consolidated segmentation-classification
network for the identification of COVID-19 beat ordinarily utilized methods of
classification on both inside and outer approval datasets.
• The method as claimed in claim 1 and claim 3, the suggested lesion attention
module empowers the network to concentrate on contaminated points and
altogether enhances the discovery of little lesions for the identification of COVID
19 at the beginning stage. In addition, the attention maps help the distinguishing
proof of lesion position, in this way enhancing the understanding of classification.
Detailed Description of the Invention
The actual dataset having 320 corona virus images and 320 healthy control
images. The set of data is represented as D 1, each image is represented as di (i) ED, i =
1,2, --- , |DI = 640 . Here,Di = [di (1), di (2),...,di (i), ... , di(IDI)]. For each image, we
represent the size as,size[di (i)] = WI x HI x C. Here W1 = Hi = 1024, C1 = 3. For
training the deep neural networks, the actual images are not relevant. This is because of
the following reasons: theypossess excessive details in three color channels; theypossess
uneven contrast; they include background, checkup bed, and text details; and large size of
the image. The below figure portrays the flow of preprocessing of the corona virus data.
Initially, the color images are converted to grayscale just by maintaining the information
ofbrightness. Thus, we obtained the set of a grayscale image represented by D 2
.
D2 = GS (D 1) = {d 2 (1), d2 (2), ... ,d2 (i), ... d2 (|D 1)} (1)
Altogether, we obtain the histogram stretched image set represented by, D 3 = (E2)= {d 3
(1), d3 (2), --- , d3 (i), ... d3(IDI)}.
Next, to ignore the texts present in the areas of the margin and to eliminate the
checkup bed at the lower region, the images must be cropped. Hence, the cropped dataset
is obtained. It is given by,
Here C denotes crop operation. Specification (et, eb, e, e )represents the values of
the crop in terms of picture elements from the top, bottom, left, and right respectively.
We fix et = eb = ei= er =150. Hence, the size of every image is represented as, si[d4 (i)]=
obtain the resized image set denoted by D 5 It is given by the following equation.
Here J: a-b represents the function of down sampling, where b denotes a down
sampled image of an actual image a. In this paper, W 5 = H5 = 256, C 5 = 1. The
advantages of down sampling are two categories: (i) It can save stockpiling (ii)
Minimum-size dataset can assist the accompanying classification framework from
overfitting. The motivation behind why we fixedW5 = H5 = 256 depends on the
experimentation strategy. We tracked down that a bigger size will acquire overfitting
which impedes the presentation, and then, a more modest size will make the pictures
foggy which likewise diminishes the classifier's exhibitions. Figure 3(a) shows samples
of Covid-19 from the preprocessed dataset D5. Figure 3(b) portrays the lesions of (a)
inside red circles.
fl = fz (8)
Here [Vfyc+Be,Vf Tys+Bs]denotes the concatenation at the channel-level; V G ZCcxCint,
andBat depict the associated biases; c and cscorrespond to the sizes of the input medium
of the categorization and segmentation sections, accordingly; and Cin denotes the
outcome medium size of the associated Convolutional layers. Operationsf 1 (y) = max (y,
0) andf 2 (y) = 1/(1 + exp(-y)) associate to ReLU and sigmoid activation operation,
accordingly. The attention map is further standardized to [0, 1]. The last outcome of the
lesion attention component is represented as:
The dual branch combination network deals with the classification of each slice.
At that point, it is necessary to consolidate the slice outcomes to accomplish individual
stage categorization and decide if the patient is tainted by the corona virus.
Notwithstanding, the slice counts shift in various patients attributable to the assorted slice
densities, view areas, or lung quantities. A few investigations used max-pooling or
normalpooling on completely associated layers to take out the impacts of such issues. Be
that as it may, this may prompt loss of data as the methodology just saves the maximum
or normal signs, everything being equal. To augment the data from every slice, we
introduced a slice probability mapping procedure dependent on resampling. In particular,
we arranged the aftereffects of slices in slipping requests and fixed the bend with a
bilinear introduction strategy. We at that point gained 100 qualities from the bend in
indistinguishable stretches and acquired sequential probabilities in sliding requests. A
straightforward 3-layer fully connected network was further adapted to the categorization
of individuals with the determined 100 qualities as info. The quantities of hubs in the two
secret layers are 256 and 128, individually.
Where g represents the original label of the specimen, and denotes the expected label.
The actual U-net utilized paired cross-entropy loss, which behaved inadequately
on our data. Computed tomography pictures of subjects with corona virus are amazingly
uneven information for segmentation because the area of lesions is generally a lot more
modest contrasted with the typical area and foundation, and BCE loss isn't reasonable for
this situation.
To handle this challenge, Dice loss is utilized. It is an intentional operation that
enhances the system on the validation metric. The dice loss at the slicing stage is
represented by the following equation:
L2c
Lod, = 1 - J2AnB
2|nB
I 1j -j (sm g
ENp
IAI+IBI |+B pj +Ygj+sm (1)
Here A denotes the ground truth; Bdenotes the expected result; and p;, gjdenote the
number of the jth component of the expected outcome and ground truth, accordingly.
The smooth specificationsm was utilized to avoid division by 0 and was fixed to 1 in our
study.
Specimens from ordinary cases are essential to prepare the categorization section.
Anyhow, for the section of segmentation, pictures of ordinary cases are negative
specimens. It will worsen the unevenness of specimens, that further influences the
preparation of the segmentation section. To overcome this issue, we suggested a unique
weighted Dice loss for the section of segmentation:
1 if label = 1
10 if label=0 (13)
Here y denotes the trade-off specification for both the losses.We fix y= 1 in this paper
analytically. Also, Dice and BCE losses are utilized for the segmentation of the lung
system and FCN, accordingly.
An aggregate of 2,371 slices from suspected cases was clarified physically, and
every single slice was commented on by a radiologist. We requested that three
radiologists clarify a similar CT picture from part of suspected cases as an examination
between the segmentation execution of dual branch combination network and
radiologists. For every slice of suspected cases in the part of categorization, we assumed
it as a positive case if the sores were set apart and the slice mark is fixed to 1. Else, we
thought about the slice as a negative example and fixed the name to 0. The slices from
sound regulations were marked as 0. Provided the huge measure of information in the
outside data and the absence of comment specialists, we didn't clarify the outer data at the
slicing stage.
Accuracy tP+fP
tp +t,+fp +f,
(15)
Sensitivity =P
tp +fp
(16)
These and other features, aspects, and advantages of the present disclosure will
become evident after reading the following comprehensive description with reference to
the accompanying illustrations, where like characters denote like parts throughout the
drawings.
Figure 1 illustrates a flow of Dual branch combination network (DCN) of the proposed
method;
Figure 3(a) illustrates samples of Covid-19 from the preprocessed dataset D5 and Figure
3(b) portrays the lesions of(a) inside colored box;
Table 1 lists the demographics of cases, where we have two divisions: (i) COVID-19
case, and (ii) healthy control cases.
Benefits, other advantages, and problem-solving methods have all been discussed in
relation to certain embodiments. However, any component(s) that may enable any
benefit, advantage, or solution to arise or become more evident are not to be read as a
critical, required, or essential element or component of any or all of the claims.
EDITORIAL NOTE
2021107205
We claim
The method to detect the COVID-19 using a novel dual-branch combination network is
proposed, this method comprises the following
1. A system of joined segmentation and classification was proposed, which attained both
the segmentation and the classification of the lesions of COVID-19 at the same time
based on the C T pictures.
2. The method as claimed in claim 1, to outline the shape of the lungs, U-net-based
segmentation was initially carried out. At that point, to undergo segmentation and
classification at the slice level, the suggested dual-branch combination network is
utilized. And also the performance of classification is enhanced by analyzing a lesion
attention component which uses the intermediary effects ofbothbranches.
4. The method as claimed in claim 1, the detection of the COVID-19 at an early stage is
useful since the lesions in the beginning phase are normally unobtrusive and hard to
distinguish. The proposed consolidated segmentation-classification network for the
identification of COVID-19 beat ordinarily utilized methods of classification on both
inside and outer approval datasets.
5. The method as claimed in claim 1 and claim 3, the suggested lesion attention module
empowers the network to concentrate on contaminated points and altogether enhances the
discovery of little lesions for the identification of COVID-19 at the beginning stage. In
addition, the attention maps help the distinguishing proof of lesion position, in this way
enhancing the understanding of classification.
R.T.Subhalakshmi,Dr.S.Appavu Alias Balamurugan,Dr.S.Sasikala
25 Aug 2021
Preprocessing
Lesion Attention
Individual-level diagnosis
Performance Analysis
Grayscaled D2
2021107205
HS D3
Cropped D4
Down-sampled D 5
Figure 3. (a) Sample of preprocessed Covid-19 from dataset D5 (b) Lesions of (a)
R.T.Subhalakshmi,Dr.S.Appavu Alias Balamurugan,Dr.S.Sasikala
25 Aug 2021
2021107205