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Do You Know?
Bacteriophage M13
It is an example of filamentous phage and it is
completely different in structure from A
phage. M 13 DNA Molecule is much smaller
than the A genome.
It is 72 Nucleotides in length.
It is circular and single stranded DNA
M 13 Phage can infect E. coli cells
DIAGRAM MISSING
Separation and isolation of DNA fragments :
The cutting of DNA by restriction
endonucleases results in the formation of
fragments of DNA.
Fragments of DNA can be separated by gel
electrophoresis.
The restriction fragments of DNA are placed
at the one end of agarose gel column. An
electric current is passed through the gel.
DNA fragments are negatively charged
moelcules they can be separated by forcing
them to move towards the anode through a
agarose gel.
Agarose is a natural polymer extracted from
sea weeds.
The smaller length fragments travel longer
distance and move further, towards the other
end of the column.
The longer length fragments travel
comparatively shorter distance through the
gel. This results in the separation of
restriction fragments.
The separated DNA fragments can be
visualised only after staining the DNA with a
compound known as ethidium bromide and
then exposed to UV light.
Bright orange coloured bands of DNA are
formed in ethidium bromide stained gel.
The DNA fragments are then used in
construction of rDNA through vectors.
FLOWCHART MIssing
3.4 Preparing and cloning a DNA library :
A clone means an exact duplicate gene,
cloning refers to production of multiple
copies of a desired genes.
Gene library is the exhaustive collection of
cloned genes of an individual.
There are two types of gene / DNA libraries
i.e. Genomic library and cDNA library.
1. Genomic library :
A collection of recombinant molecules which
contain all of the DNA sequences of an
individual genome is called genomic library.
Genomic libraries of many organism such as
bacteria, yeast, drosophila and man are
constructed for research work.
Construction of genomic library :
Isolation of total DNA or entire genome of an
organism.
DNA is broken into fragments of appropriate
size by using suitable restriction
endonucleases.
Insertion of fragments into a suitable vector
(usually phage)V ).
Introduction of recombinant DNA into the
host cell to get a large number of
independant clones.
Selection of desired clones.
The genomic library is produced by shotgun
cloning method.
Importance of genomic library :
1. Genomic library is store house of genes of
an organism.
2. It provide genes for gene manipulation
whenever required.
3. It is the source of information about genes
of organisms.
Do You Know ?
The number of fragments of DNA required for
construction of genomic library depends
upon the organismg involved.
Example : E. Coli1500, Yeast = 4600,
Drosophila = 48000, Main 800,000,
Cloning all DNA fragments of an organism
into bacteria at a time by a single gene
cloning experiment is called shotgun cloning.
It is used to construct genomic libraries of
different organisms.
2. cDNA Library :
CDNA is a complementary DNA produced
from mRNA by the process of reverse
transcription. The process is also called
Teminism.
Enzyme reverse transcriptase is required for
E synthesis of DNA from mRNA.
CDNA library is mainly constructed for
eukaryotic organisms.
The library constructed by using CDNA is
called cDNA library.
The mRNA carrying only the transcribed
coding sequences is translated into protein.
mRNA of different cells, tissues and organs at
different phases in the life cycle of an
organism are isolated and by using reverse
transcriptase it is converted into CDNA.
CDNA can be inserted into suitable vectors
like phage or plasmid and then cloned in a
proper host such as E. coli.
Importance of cDNA library :
1. Single stranded cDNA with radioactive
labelling is very useful in genetic engineering.
2. Eukaryotic cDNA can express itself in
bacterial cell.
3. Production of human proteins such as
interferon, insulin, blood clotting factor VIII
can be produced due to cDNA.
Agrobacterium tumefaciens :
It is soil borne bacterium causing crown gall
disease in dicot plants.
It is gram negative bacterium and rod shaped.
It infects the crown and stem of several
dicotyledonous and gymnospermic plants
through fresh wounds The tumerous growth
in the crown of plants is called crown galls
and the disease is called crown gall disease.
The tumour induction by Agrobacterium is
correlated with a large tumour inducing
plasmid (Ti plasmid) in the bacterium.
A portion of Ti plasmid is transferred to
chromosomal DNA of the infected cell, and is
called T DNA.
Ti plasmid naturally transfers their T DNA
segment in to host plant genome hence
Agrobacterium is known as natural genetic
engineer.
The T DNA of a plasmid gets integrated into
chromosomal DNA of the infected cell.
Tumour producing gene becomes the marker
gene. Therefore A. tumifaciens is most widely
used for gene transfer.
Cry gene from Bacillus thuringiensis, Nif gene
from Rhizobium and other foreign genes are
cloned inside the A. tumifaciens and
transferred to other plants.
Golden rice :
It is also called Miracle rice.
It is a genetically modified crop (GMC).
Plant canying genes to produce betacarotene.
The seeds are rich in starch, iron and vitamin-
A and this it is more nutritious and valuable
from health point of view.
Prof. lngo Potrykus and Peter Beyer produced
the golden rice.
It is golden coloured transgenic rice.
It is developed by introducing three genes
associated with biosynthesis of beta carotene.
Thus by adding the nutrients to food supply
the intensity of malnutrition effects would be
reduced.
Biopatent :
A government protection to an inventor of a
biological material, securing to him for a
manufacturing, exploiting, using and selling
an invention is called biopatent.
The biopatents are awarded for GM strains of
microorganisms, plants, animals, cell lines,
DNA sequences, industrial processes and
biotechnological procedures etc.
The rights to protect this property are called
Intellectual property rights (IPR),
The duration of patent in India is five years
from date of grant of patent or seven years
from date of filling the application, which
ever is less.
Intellectual property right include patents
copy right, trade marks and trade secrets.
Genetically engineered Pseudomonas (Super
bug) is the first biopatent.
Examples of Biopatents
The genetically engineered Pseudomonas
called‘ ‘super bug” used for cleaning up oil
spills was first to be patented under US
patent (first biopatent).
A Texas base company got patent rights on
Basmati rice through the US patent and Trade
mark office.
Patent granted by US patent office for
medicinal use of turmeric powder as an
antiseptic, wound healing agent.
BioPatent for use of neem seed oil as a
fungicide.
Bio-Piracy (Biocolonialism) :
The illegal exploitation or the use of the
bioresource already awarded biopatent and
also biopatenting of bio-resource of other
nation without proper permission of the
concerned nation is called bio piracy.
Reasons of biopiracy:
The nation should be rich in biodiversity and
bioresources.
The developing nations have traditional
knowledge of useful bioresources.
Most of the countries do not have financial
power and technological resources to make
use of the available bioresources.
Biopiracy of Neem :
Patenting of seed oil from Indian neem by US
Department of Agriculture and W. R. Grace in
1992 was a case of biopiracy.
For generations, Indians had use Neem oil as
a medicine and pest controlling agent.
In 2000 after a long legal battle, the European
Patent office revoked the patent of USDA.