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Gynecologic Oncology 120 (2011) 89–93

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Gynecologic Oncology
j o u r n a l h o m e p a g e : w w w. e l s e v i e r. c o m / l o c a t e / y g y n o

Quantification of intracellular HPV E6/E7 mRNA expression increases the specificity


and positive predictive value of cervical cancer screening compared to HPV DNA
Gerald Coquillard a, Bibiana Palao b, Bruce K. Patterson a,⁎
a
Department of Pathology and Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University School of Medicine, Stanford, CA 94304, USA
b
Labec Pharma, Maria de Molina 14, Madrid, Spain

a r t i c l e i n f o a b s t r a c t

Article history: Objectives. Current methods for HPV screening rely on the detection of L1 DNA from high risk genotypes
Received 9 July 2010 (HRHPV). These assays have very high negative predictive values (~99%), however, the specificity and
Available online 14 October 2010 positive predictive value of HPV DNA tests for pre-cancerous and cancerous lesions (CIN 2+) is less than 50%.
The purpose of this study was to compare HPV DNA with intracellular HPV E6, E7 mRNA quantification in an
Keywords: effort to improve the performance of cervical cancer screening.
HPV
Methods. Liquid-based cervical cytology specimens collected in either PreservCyt or SurePath were
E6
E7
processed for routing cytology, HPV HRDNA detection by Hybrid Capture 2 and HPV E6, E7 mRNA
mRNA quantification in cells using the same sample. We analyzed a total of 2049 samples including 73 with CIN 2,
HPV OncoTect CIN 3, or squamous cell carcinoma by biopsy and 1694 samples from women with normal cytology.
Hybrid Capture 2 Results. The positive predictive value of HPV E6, E7 mRNA quantification in cells for CIN2+ was 78% which
CIN was greater than HPV DNA alone (43%). The specificity of HPV E6, E7 mRNA quantification was 96% based on
normal cytology compared to 82% for HC2 while the specificity of HPV E6, E7 mRNA quantification based on
CIN 2− histology was 85% compared to 35% for HC2.
Conclusions. With similar sensitivity and greater specificity/positive predictive value, HPV E6, E7 mRNA
quantification in cells is an improvement over HPV DNA for cervical cancer screening.
© 2010 Published by Elsevier Inc.

Introduction Since the overexpression of the HPV-encoded oncogenes E6 and E7


plays a significant albeit not solitary role in cervical carcinogenesis
Effective cervical cancer screening programs like those implemented [15,16], quantification of these oncogenes could improve the specificity
in the United States have reduced the incidence and the mortality of and positive predictive value of cervical cancer screening with the goal
cervical cancer [1]. The Papanicolaou smear (Pap) has been used for over of detecting CIN 2+ lesions with high specificity [17–19].
fifty years to screen for cervical cancer and over the last ten years, HPV The combination of the Pap smear and HPV DNA has proven to be a
DNA testing as a reflex test for ASCUS (atypical squamous cells of useful, though a costly and labor intensive combination to effectively
unknown significance) has also been employed [2–5]. Based on current screen for cervical cancer in areas where highly skilled cytotechnolo-
recommendations, HPV DNA testing is used as an adjunctive test for all gists, cytopathologists, and virologists can perform this combination of
cervical cytology samples (co-testing) in women over 30 years old [6,7]. tests. The majority of the world, where greater than 85% of cervical
The Pap smear is limited by low sensitivity for high grade lesions (CIN 2, cancer occurs, lacks the resources to implement such a rigorous
CIN 3, or squamous cell carcinoma) while the sensitivity of HPV DNA screening program at the recommended intervals [14]. Therefore in
testing for high grade lesions is greater than 90% [6–9]. HPV DNA testing the present study, we compared a new technology that quantifies the
alone, however, has lower specificity for high grade lesions than does HPV-encoded genes (E6, E7 mRNA) that cause cervical cancer in
Pap testing [6,9]. Because of the poor specificity of HPV DNA testing, the individual cells [17–19]. Upregulation of E6, E7 mRNA in individual cells
positive predictive value of HPV DNA for high grade lesions by biopsy is is the molecular trigger that begins the cycle of cellular transformation,
15%–25% which can lead to unnecessary colposcopy and biopsy p53 and Rb degradation, and cell cycle dysregulation that ultimately
examinations in women with abnormal Pap smears who are positive leads to cervical cancer [15,16]. Other molecular tests such as the Aptima
for high risk HPV DNA [10–14]. HPV Assay and the HPV Proofer assay detect the presence of E6, E7
mRNA from high risk HPV types but do not quantify the overexpression
of E6, E7 mRNA on a cell-by-cell basis, the hallmark of cellular
⁎ Corresponding author. Department of Pathology, Stanford University Medical
transformation [10]. Here, we demonstrate that quantification of E6,
School, 3373 Hillview Ave, Palo Alto, CA 94304, USA. Fax: + 1 650 587 1528. E7 mRNA at the cellular level and quantification of the percentage of
E-mail address: brucep@stanford.edu (B.K. Patterson). cells expressing elevated levels of HPV E6, E7 mRNA have equivalent

0090-8258/$ – see front matter © 2010 Published by Elsevier Inc.


doi:10.1016/j.ygyno.2010.09.013
90 G. Coquillard et al. / Gynecologic Oncology 120 (2011) 89–93

sensitivity and far superior specificity/PPV than the FDA-approved (InCellDx, Menlo Park CA) and confirmed by running normal cervical
hybrid capture 2 assay for CIN2+ lesions detected by histology. Further, cytology samples fixed in ThinPre or SurePath liquids.
we demonstrate that quantification of cells expressing high levels of E6,
E7 mRNA correlates with the severity of the cervical lesion on biopsy. Statistical analysis

Materials and methods Statistical analyses were performed using either a t-test or a Mann–
Whitney Rank Sum test. P values b0.05 were considered statistically
Subjects significant.

Cervical cytology samples from multiple sites including both low- Results
and high risk populations were used with ethical approval that
consisted of a waiver of consent for pre-existing samples. Cervical Liquid-based cytology specimen stability for E6/E7 mRNA quantification
cytology specimens were collected using a cytobrush and preserved
using either PreserCyt (Cytyc, Inc, Boxborough, MA) or SurePath Because stability of RNA is an issue in clinical diagnostic testing, we
(TriPath Imaging, Burlington, NC) liquid-based cytology fixatives. The determined the stability of HPV E6, E7 mRNA in clinical samples
smears were classified using The Bethesda System 2001 criteria. preserved in LBC preservative over a period of three months.
Commercially available positive and negative control cells were stored
Cell lines at room temperature in PreservCyt fixative over a period of three
months. The mean fluorescence intensity of the positive control cells
HeLa cells were used as a positive cell control for the E6, E7 mRNA (Seracare, Life Sciences, Milford, MA) and the mean fluorescence
assay. These cells were obtained from the American Type Culture intensity (MFI) of the negative control cells (Seracare Life Sciences,
Collection (ATCC) and grown according to the instructions. Normal Milford, MA) were determined following the E6, E7 mRNA assay at
human ectocervical cells (Clonetics, Inc) that were used as negative desired time intervals (Table 1, Fig. 1). The signal to noise (SNR) ratio as
control cells for the E6, E7 mRNA assay were grown in media supplied by determined by the MFI of the positive control cell peak minus the MFI of
the company. In addition, positive and negative HPV control cells the negative control cell peak was assessed at each time interval. In
commonly used for HPV DNA controls (Accurun, Seracare Life Sciences, addition to the control cells, residual samples from five cytologically
Milford MA) were used without undergoing lysis and nucleic acid normal samples and five samples with ASCUS or LSIL cytology that were
extraction that is necessary for HPV DNA analysis. positive for cells overexpressing E6, E7 mRNA were assayed at baseline,
three days, one week, one month and three months. The SNR of the
Simultaneous ultrasensitive signal-enhancing hybridization in situ (SUSHI) control cells varied by less than 20% over the course of three months and
the patient samples demonstrated little variability over three months
A 0.5 mL aliquot was removed from the liquid-based cervical with no positive samples becoming negative because of the age of
cytology specimen. The cells were pelleted by centrifugation at 400 ×g sample (data not shown).
and washed once in phosphate buffered saline (PBS), pH 7.4 with 2%
fetal calf serum. Following washing, the cells were fixed and Interrun reproducibility of the in cell E6, E7 mRNA assay
permeabilized in IncellFP (InCellDx, Menlo Park CA) for 1 h at ambient
temperature. Following fixation and permeabilization, the cells were To determine reproducibility, we ran in cell E6, E7 mRNA on thirty
washed once in PBS, pH 7.4, pelleted by centrifugation at 400 ×g, paired 0.5 mL aliquots of the same sample. These samples were then run
washed again in 2× SSC and pelleted by centrifugation. SUSHI for E6, E7 on the same instrument using the same settings and analysis protocol.
mRNA was performed by resuspending the cells in a hybridization mix As shown in Fig. 2, the correlation between the samples from the first
and cocktail of signal-enhancing oligonucleotide probes specific for E6, run compared to the samples from the second run yields a r2 = 0.98. Of
E7 mRNA from all high risk HPV genotypes (InCellDx, Menlo Park CA). the thirty samples, no result would have changed the diagnosis from
Hybridization was performed at 43 °C. for 30 min and was followed by positive to negative or from negative to positive for overexpression of
successive stringency washes. The cells were resuspended in PBS, pH 7.4 E6, E7 mRNA.
with 2% fetal calf serum for flow cytometric analysis.
Liquid-based cervical cytology specimen adequacy
Hybrid capture 2
Prior to performing HPV E6, E7 analysis, the adequacy of LBCs was
Hybrid Capture 2 was performed on either ThinPrep preserved liquid assessed directly out of the Pap vial using the same molecular hybrid
cytology samples or CytoRich preserved liquid cytology samples. Four platform used for E6, E7 analysis. As demonstrated previously [20,22],
mL of residual sample was used for the assay. Nucleic acid extraction LBC specimen adequacy as defined by the Bethesda System 2001 was
was performed and the rapid capture robot was used to perform the performed by placing the LBC vial into the BlueFISH™ Analyzer and
assay according to the manufacturer's instructions using the high risk determining the number of ectocervical cells, endocervical cells, and
panel of probes (HPV 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, and 68).
Table 1
Flow cytometry Liquid-based cervical cytology specimen stability as determined by signal to noise ratio
(SNR) degradation over time at 25 °C storage using positive and negative control cells
preserved in SurePath liquid.
Flow cytometry was performed using forward and orthogonal (side)
light scatter to unequivocally identify the ectocervical population of cells Time Mean fluorescence intensity (MFI)
in the liquid-based cervical cytology sample [20–22]. Single color Positive control cells Negative control cells
analysis for HPV E6, E7 mRNA was performed on a FC500 flow cytometer
Day 0 11.4 0.7
(Beckman-Coulter, Fullerton CA) or a dedicated BlueFISH™ Analyzer Day 7 13.1 0.8
(IncellDx, Menlo Park, CA). Analysis was restricted to ectocervical cells Day 14 10.9 0.7
defined by forward and orthogonal light scatter characteristics. The Day 21 12 0.9
cursor position defining HPV E6, E7 mRNA negative cells from HPV E6, Month 1 14.2 1
Month 3 9.8 1.6
E7 mRNA positive cells was determined using negative control cell lines
G. Coquillard et al. / Gynecologic Oncology 120 (2011) 89–93 91

Fig. 1. Representative plots of positive and negative control cells demonstrating the expression of E6, E7 mRNA in individual cells. The dual parameter (FSC, SSC) dot plots represent
the light scatter characteristics of the control cells. The histograms represent the expression of E6, E7 mRNA in positive and negative control cells. The overlay of the positive and
negative control cells illustrates the difference in E6, E7 mRNA expression in the negative cells (left peak) and the positive cells (right peak). The signal to noise SNR) ratios (Table 1)
are calculated by dividing the mean fluorescence intensity (MFI, dotted lines) of the positive control peak by the MFI of the negative control peak.

inflammatory cells per microliter of LBC preservative. Using a cut-off of E7 mRNA quantification (Fig. 3) prior to performing Hybrid Capture 2 on
500 ectocervical cells/microliter which corresponds to N5000 squamous 4 mL of the remaining sample. As shown in Table 2, the sensitivity of
cells per slide [22], we determined that 2049 samples of 2094 total Hybrid Capture 2 for CIN 2+ was 89% and the sensitivity of E6, E7 mRNA
samples were adequate (2.2% unsatisfactory samples) for cytologic quantification was approximately 84%. The sensitivity for both HC 2 and of
evaluation and HPV testing with both HC2 and E6, E7 mRNA (data not E6, E7 mRNA quantification was 91% based on 22 CIN 3 biopsies. Hybrid
shown). Capture 2 was negative in one squamous cell carcinoma that was positive
by E6, E7 mRNA quantification. Hybrid Capture 2 indiscriminately
detected dysplasia of widely variable severity including 82% of CIN 1
Comparison of cytology, HC2, and E6, E7 mRNA with histology lesions (compared to 27% for E6, E7 mRNA quantification) which typically
regress and most importantly do not require treatment. Conversely,
Split sample testing was performed on all 2049 samples by removing a quantification of cells overexpressing E6, E7 mRNA was more specific for
0.5 mL aliquot from liquid-based cervical cytology specimens for HPV E6, “downstream” lesions CIN 2, CIN 3, and squamous cell carcinoma as
demonstrated in Table 2. The positive predictive value of HPV E6, E7
mRNA quantification in cells for CIN2+ was 78% which was greater than
HPV DNA alone (43%). The specificity of HPV E6, E7 mRNA quantification
was 96% based on normal cytology compared to 78% for HC2 (data not
shown) while the specificity of HPV E6, E7 mRNA quantification based on
CIN 2− histology was 85% compared to 35% for HC2.

Discussion

Currently, the combined use of cervical cytology and HPV DNA


testing is the mainstay of cervical cancer screening programs. Studies
comparing the performance of cervical cytology with high risk HPV DNA
detection for the detection of pre-cervical cancer or cervical cancer
lesions (CIN 2+) have shown that the Pap smear lacks sensitivity to
detect all women with pre-cervical cancer or cervical cancer lesions
although the specificity of the Pap smear is greater than 90% [6–9].
Fig. 2. Interrun reproducibility using split liquid-based cervical cytology samples Conversely, the sensitivity of high risk HPV DNA is superior to that of
demonstrating strong correlation. cytology for the detection of pre-cervical cancer and cervical cancer
92 G. Coquillard et al. / Gynecologic Oncology 120 (2011) 89–93

Fig. 3. Representative histograms of liquid-based cervical cytology specimens from women with normal cytology (left column) or from women with biopsies diagnosed as cervical
intraepithelial neoplasia 3 (CIN 3, right column). Women with N 2.0% of cells expressing high levels of E6, E7 mRNA correlated with high grade cervical lesions (CIN 2+).

lesions, however, the specificity of HPV DNA is less than cytology leading value of HPV DNA alone [13]. Similarly, opposition to the use of HPV
to a low positive predictive value for CIN 2+. The performance profile of DNA testing for primary cervical cancer screening has also focused on
these two common tests for cervical cancer screening necessitates their the low specificity and low positive predictive value of HPV DNA for CIN
combined use in order to detect almost all CIN 2+ lesions without 2+ which would send an unacceptable number of women for
sending an inordinate number of women for colposcopy and biopsy unnecessary cervical biopsies [14]. Further the combined use of cervical
because of the relatively low specificity and low positive predictive cytology and HPV DNA is costly and labor intensive; factors magnified in
resource poor settings. Here, we report the performance of a new RNA
Table 2 approach to cervical cancer screening which greatly improves the
Performance comparison of HC2 and E6/E7 mRNA quantification for the detection of specificity and PPV for CIN2+. This assay can be performed on any flow
cervical abnormalities. cytometry platform including those already installed throughout the
Biopsy diagnosis HPV DNA (HC2) Oncotect E6, E7 mRNA Total developed and developing world to monitor CD4 counts in individuals
infected by HIV.
Benign 57 (52%) 12 (11%) 109
CIN 1 64 (82%) 21 (26.9%) 78
Schiffman and colleagues describe the dynamic lifecycle of HPV
CIN 2 38 (88.3%) 36 (83.7%) 43 following infection [12]. Infection of women by high risk genotypes of HPV
CIN 3 20 (91%) 20 (91%) 22 including HPV 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59,and 68 has been
SCC 7 7 (87.5%) 8 (100%) 8 associated with cervical cancer but b5% of these infections result in cancer
Specificity (incl CIN 2−) 35% 85%
if left untreated [13]. The oncogenic potential of these high risk genotypes
G. Coquillard et al. / Gynecologic Oncology 120 (2011) 89–93 93

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