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A Mathematical Model of Metabolic Insulin Signaling Pathways
A Mathematical Model of Metabolic Insulin Signaling Pathways
pathways
Ahmad R. Sedaghat, Arthur Sherman and Michael J. Quon
Am J Physiol Endocrinol Metab 283:E1084-E1101, 2002. First published 2 July 2002;
doi:10.1152/ajpendo.00571.2001
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Cecilia Brännmark, Robert Palmér, S. Torkel Glad, Gunnar Cedersund and Peter Strålfors
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Am J Physiol Endocrinol Metab 283: E1084–E1101, 2002.
First published July 2, 2002; 10.1152/ajpendo.00571.2001.
Sedaghat, Ahmad R., Arthur Sherman, and Michael insulin signal transduction pathways leading from the
J. Quon. A mathematical model of metabolic insulin signal- insulin receptor to translocation of GLUT4 (see Ref. 32
ing pathways. Am J Physiol Endocrinol Metab 283: for review).
E1084–E1101, 2002. First published July 2, 2002; 10.1152/ On binding insulin, the insulin receptor undergoes
ajpendo.00571.2001.—We develop a mathematical model
receptor autophosphorylation and enhanced tyrosine
that explicitly represents many of the known signaling com-
kinase activity. Subsequently, intracellular substrates
Address for reprint requests and other correspondence: M. J. The costs of publication of this article were defrayed in part by the
Quon, Cardiology Branch, National Heart, Lung, and Blood Insti- payment of page charges. The article must therefore be hereby
tute, National Institutes of Health, Bldg. 10, Rm. 8C-218, 10 Center marked ‘‘advertisement’’ in accordance with 18 U.S.C. Section 1734
Dr. MSC 1755, Bethesda, MD 20892-1755 (E-mail: quonm@nih.gov). solely to indicate this fact.
E1084 http://www.ajpendo.org
MODELING OF INSULIN SIGNALING E1085
possible to generate a vast experimental database for pathways to generate a complete model with 21 state vari-
understanding cellular signaling. Alfred Gilman has ables. This complete model is then extended to incorporate
founded The Alliance for Cellular Signaling (http:// feedback pathways, and consequences of feedback are ex-
www.cellularsignaling.org/) with the goal of inte- plored. Differential equations derived from the structure of
the complete model were solved by use of a fourth order
grating relevant experimental data (temporal and spa- Runge-Kutta numerical integration routine (42), using the
tial relationships of signaling inputs and outputs in a WinPP version of XPPAUT (available at http://www.math.
cell) into interacting theoretical models. This compre- pitt.edu/⬃bard/xpp/xpp.html; see APPENDIX A for complete
hensive approach may enable a full understanding of list of equations, initial conditions, and model parameters;
the complexities of cell signaling. In this spirit, we now see http://mrb.niddk.nih.gov/sherman for WinPP source
develop a mathematical model of metabolic insulin files used to run simulations). A sufficiently small step size
signaling pathways that explicitly represents many (0.001 min) was used to ensure accurate numerical integra-
known insulin signaling components. Our goal is to tions for all state variables. First order kinetics were as-
define a comprehensive model that not only accurately sumed except where noted.
represents known experimental data but will also Complete Model without Feedback
serve as a useful tool to generate and test hypotheses.
This modeling approach may lead to novel insights Insulin receptor binding subsystem. Our model of insulin
regarding the molecular mechanisms underlying insu- receptor binding kinetics (57) (Fig. 1A) was extended here to
lin signal transduction pathways that regulate meta- include additional steps representing insulin receptor auto-
phosphorylation and dephosphorylation (Fig. 1B). On bind-
bolic actions of insulin. ing the first molecule of insulin, the receptor is rapidly
Fig. 1. Schematic of insulin receptor binding and life cycle subsystems. A: previously validated model of insulin
binding kinetics (57). x1, Free insulin concentration (system input); x2, free receptor concentration; x3, concentra-
tion of receptors with 1 molecule of insulin bound; x4, concentration of receptors with 2 molecules of insulin bound;
k1 and k⫺1, association and dissociation rate constants, respectively, for the first molecule of insulin to bind the
receptor; k2 and k⫺2, association and dissociation rate constants, respectively, for the second molecule of insulin to
bind the receptor. B: receptor binding subsystem extended to include receptor autophosphorylation and dephos-
phorylation. x5, Concentration of once-bound phosphorylated receptors; x4, redefined as concentration of twice-
bound phosphorylated receptors; k3, rate constant for receptor autophosphorylation; k⫺3, rate constant for receptor
dephosphorylation; [PTP], a multiplicative factor modulating k⫺3 that represents the relative activity of protein
tyrosine phosphatases (PTPases) in the cell that dephosphorylate the insulin receptor. C: previously validated
model of insulin receptor recycling (36). x6, Concentrations of intracellular receptors; k4, endocytosis rate constant
for free receptors; k⫺4, exocytosis rate constant; k4⬘, endocytosis rate constant for bound receptors; k5, zero order
rate constant for receptor synthesis; k⫺5, constant for receptor degradation. D: extension of insulin receptor binding
and recycling subsystems that includes phosphorylated receptors. x7 and x8, concentration of twice-bound and
once-bound intracellular phosphorylated receptors, respectively; k⫺4⬘, exocytosis rate for twice-bound and once-
bound intracellular phosphorylated receptors; k6, dephosphorylation rate constant for intracellular receptors that
is modulated by the multiplicative factor [PTP].
As with [PTP], the lipid phosphatase factors [SHIP] and increased to its maximum value as a linear function of the
[PTEN] correspond to the relative phosphatase activity in the metabolic effect produced by phosphorylated Akt and PKC-.
cell and are assigned a value of 1 under normal physiological By assuming that the basal equilibrium distribution of 4%
conditions. cell surface GLUT4 and 96% GLUT4 in the intracellular pool
Activation of downstream Ser/Thr kinases Akt and PKC- transitions on maximal insulin stimulation to a new steady
is dependent on levels of PI(3,4,5)P3 (2, 49). In our model, this state of 40% cell surface GLUT4 and 60% intracellular
is governed by rate constants that interact with the level of GLUT4, the equations governing changes in k13 and k13⬘ are
PI(3,4,5)P3 (see APPENDIX B for detailed derivation). The dif-
ferential equations describing this are k 13 ⫽ 共4/96兲k ⫺13 (28)
ceptors at the cell surface made up ⬃75% of the surface maximal levels was ⬃16 min). Thus the overall re-
receptor population, and phosphorylated twice-bound sponse of our complete model without feedback to an
surface receptors comprised ⬃23% of the surface recep- acute insulin input is in good agreement with both a
tor population. When insulin was removed after 15 min variety of published experimental data and previously
of stimulation, the concentration of free insulin recep- validated subsystem models.
tors returned to basal levels with a half-time of ⬃3.5
min. A short transient rise in the concentration of Model Simulations with Feedback
phosphorylated surface receptors bound to one mole-
cule of insulin was observed as phosphorylated twice- Having developed a plausible mechanistic model of
bound surface receptors passed through the once- metabolic insulin signaling pathways related to trans-
bound state to return to the unbound free state. As location of GLUT4, we next explored the effects of
expected, the state variables x6, x7, and x8, which including positive and negative feedback loops to gain
represent intracellular insulin receptors, did not additional insight into the complexities of insulin sig-
change very much with an acute insulin stimulation naling. Phosphorylation of PTP1B by Akt partially
(data not shown). These results are in good agreement inhibits the ability of PTP1B to dephosphorylate the
with both published experimental data and previous insulin receptor and IRS-1 (38). In addition, PKC-
results from our subsystem models of receptor binding phosphorylates serine residues on IRS-1 and inhibits
and recycling (36, 51, 57). In response to the rise in the ability of IRS-1 to bind and activate PI 3-kinase
autophosphorylated surface insulin receptors, unphos- (39). As described in MODEL DEVELOPMENT, we incorpo-
phorylated IRS-1 was rapidly converted to tyrosine- rated these positive and negative feedback interactions
min. On removal of insulin, the concentration of acti- generates predictions regarding the dynamics of vari-
vated PI 3-kinase returned to basal levels (time to ous signaling components that may be experimentally
half-maximal levels was ⬃17 min). The time courses for testable.
PI(3,4,5)P3, PI(3,4)P2, PKC-, and Akt displayed a qual-
itatively similar dynamic (Fig. 9, B and C). That is, after Insulin Dose-Response Characteristics
1 min of insulin stimulation, the level of PI(3,4,5)P3
increased from 0.31% of the total lipid population to a We generated simulations of insulin dose-response
peak of ⬃6.1% followed by an undershoot before equil- curves to further explore characteristics of our model
ibration at ⬃2.5%. The level of PI(3,4)P2 increased with and without feedback. Step inputs ranging from
from 0.21% to a peak of ⬃5.6% before equilibrating at 10⫺6 to 10⫺12 M insulin for 15 min were used to
a steady-state level of ⬃2.4%. On removal of insulin, construct dose-response curves for maximum levels of
both PI(3,4,5)P3 and PI(3,4)P2 returned to their basal bound insulin receptors at the cell surface, total phos-
levels (time to half-maximal levels was ⬃17 min). In phorylated receptors at the cell surface, activated PI3-
response to insulin, the percentage of activated PKC- kinase, and cell surface GLUT4 (Fig. 10). Published
transiently peaked at ⬃17.1% after ⬃1.5 min followed experimental data corresponding to each of these ele-
by an undershoot and equilibration at ⬃7.4% by 11 ments were then compared with simulation results.
min. After insulin was removed, the level of activated The experimental data used for comparison were ob-
PKC- declined to basal levels with a time to half- tained from a series of experiments performed in the
maximal levels of ⬃17 min. Because we modeled the same preparation of rat adipose cells (47). For bound
behavior of Akt identically to PKC-, the time course surface insulin receptors (x3 ⫹ x4 ⫹ x5), the dose-
increased levels of PI(3,4,5)P3, and the rate of exocyto- cade that controls insulin-stimulated translocation of
sis for GLUT4 in response to phosphorylated PKC- GLUT4 and has been observed experimentally in rat
and Akt are all modeled as simple linear functions. In adipose cells (20).
the case of the negative feedback loop where PKC- To further validate our complete model without feed-
phosphorylates IRS-1 on serine residues, we modu- back, we compared published experimental data with
lated the rate constant for serine phosphorylation of simulations of insulin dose-response curves for key
IRS-1 using a standard Hill equation to incorporate a state variables (Fig. 10). The usefulness of these com-
reasonable time lag. Importantly, we observed a good parisons was substantially strengthened by the fact
overall match between experimental data and model that data on insulin receptor binding, receptor auto-
simulations for both insulin dose-response curves and phosphorylation, PI 3-kinase activation, and glucose
time courses. Thus our coupling assumptions seem transport were obtained from a single experimental
reasonable. Nevertheless, these points in the model preparation of rat adipose cells (47). Qualitatively, the
represent areas that could be further refined in the sigmoidal shape of dose-response curves generated by
future when a greater understanding of the molecular our model simulations (when plotted as a semi-log
mechanisms involved is achieved. Indeed, by modeling graph) is consistent with the hyperbolic response char-
more complicated coupling mechanisms, specific simu- acteristic of most receptor-mediated biological events.
lation results may give rise to experimentally testable In addition, we observed increased insulin sensitivity
predictions. This interplay between theoretical predic- for downstream components of the insulin signaling
tions and experimental results may yield important pathway. That is, ED50 ⫽ 3.5 nM for receptor binding,
insights into the molecular mechanisms of insulin ac- ED50 ⫽ 3.5 nM for receptor autophosphorylation,
feedback loop into our model by having Akt phosphor- ported for insulin-stimulated PI 3-kinase activity, it is
ylate PTP1B and impair its ability to dephosphorylate possible that time courses with sufficiently fine resolu-
the insulin receptor and IRS-1 (38). The slight increase tion to capture this behavior have not been performed.
in insulin sensitivity for insulin binding and receptor Intriguingly, a damped oscillatory behavior or biphasic
autosphosphorylation observed in our model with feed- activation of PKC- in response to insulin stimulation
back was an expected result of positive feedback at the previously has been reported in several studies (48,
level of the insulin receptor. That is, decreased activity 50). Only our model with feedback (but not without
of PTPases against phosphorylated insulin receptors feedback) generated simulations for insulin-stimulated
results in subtle shifts in the equilibrium states for the PKC- activity that closely matched the complex dy-
various receptor state variables. Similarly, we ob- namic for PKC- present in published experimental
served slightly decreased sensitivity for the activated data (48). Thus one novel result from our model is the
PI 3-kinase dose-response curve derived from our suggestion that negative feedback from PKC- to IRS-1
model with feedback. This is the result of positive
may be sufficient to explain the complex dynamic be-
feedback with Akt phosphorylating PTP1B and inhib-
havior of PKC- activity in response to insulin.
iting tyrosine dephosphorylation of IRS-1. In addition,
the lower equilibrium level of PI 3-kinase after maximal
insulin stimulation (which defines the parameter PI3K) Modeling Increased Levels of PTPases
also contributes to a shift in insulin sensitivity at the In addition to giving insight into normal physiology,
level of PI 3-kinase. Dose-response curves for transloca- our model may also be useful for helping to understand
tion of surface GLUT4 derived from the model with feed-
x1(0) ⫽ 0
x2(0) ⫽ 9 ⫻ 10⫺13 M Model with Feedback
x3(0) ⫽ 0 Additional state variables are as follows
x4(0) ⫽ 0
x5(0) ⫽ 0 x10a ⫽ concentration of serine-phosphorylated IRS-1
Additional equations are as follows Table 2. Rate constants obtained from previously
dx9/dt ⫽ k⫺7[PTP]x10 ⫺ k7x9(x4 ⫹ x5)/(IRp) ⫹ k⫺7⬘ x10a ⫺ validated subsystem models
k7⬘[PKC]x9 (updated) Subsystem Model Rate Constants
dx10a/dt ⫽ k7[PKC]x9 ⫺ k⫺7⬘ x10a
Insulin binding k1 ⫽ 6 ⫻ 10 M⫺1 䡠 min⫺1
7
half-time for maximal IRS-1 phosphorylation to be 10 s, k7 ⫽ Because many other growth factors can activate Akt and
4.16 min⫺1 (using Eq. 32). Under normal physiological con- PKC- simultaneously (19, 28), we assumed that with maxi-
ditions, where PTP ⫽ 1, Eq. 14 can be simplified and rear- mal insulin stimulation, both Akt and PKC- exist in a 10:1
ranged as k⫺7 ⫽ (x9 /x10)k7 in the equilibrium state after unactivated-to-activated distribution at equilibrium. There-
maximal insulin stimulation. Thus, under conditions of max- fore, from Eqs. 21–24, we can constrain k⫺11 ⫽ 10k11 ⫽
imal insulin stimulation, k⫺7 ⫽ (2.5/7.45)k7. Reassuringly, 10 ln(2) and k⫺12 ⫽ 10k12 ⫽ 10 ln(2). Because PI(3,4,5)P3
these values for k7 and k⫺7 are consistent with the time formation mediates Akt and PKC- activation (50, 56), we
course for IRS-1 phosphorylation and dephosphorylation ob- assumed that rate constants for activation of both Akt and
served in rat adipose cells (24). Similarly, at equilibrium, PKC- increase from zero to their maximal values as a linear
Eqs. 16 and 17 can be simplified and rearranged as k8 ⫽ function of the increase in PI(3,4,5)P3 levels
x12/(x10 x11)k⫺8. Because we were unable to find data on rates
k 11 ⫽ 共0.1k ⫺ 11 兲共x 13 ⫺ 0.31兲/共3.10 ⫺ 0.31兲 (B34)
for association or dissociation of IRS-1 with PI 3-kinase, we
chose k⫺8 ⫽ 10 min⫺1 to be consistent with the scale of other k 12 ⫽ 共0.1k ⫺ 12 兲共x 13 ⫺ 0.31兲/共3.10 ⫺ 0.31兲 (B35)
rate constants in the postreceptor signaling subsystem.
Thus, at maximal insulin stimulation, we constrained k8 ⫽ where 0.31 is the basal value of PI(3,4,5)P3 and 3.10 is the
(50/70.775) ⫻ 1012 M⫺1 䡠 min⫺1. value of PI(3,4,5)P3 in the cell after maximal insulin stimu-
On the basis of data from 3T3-L1 cells, we assumed that lation. The values used for k⫺13, k14, and k⫺14 were previ-
levels for both PI(3,4,5)P3 and PI(3,4)P2 rise 10-fold after ously defined for the GLUT4 translocation subsystem (Table
maximal insulin stimulation (22, 46), resulting in a new 2), and the values for k13 and k13⬘ can be derived from this
equilibrium distribution of 3.1, 94, and 2.9% for PI(3,4,5)P3, information using Eqs. 28 and 29.
PI(4,5)P2, and PI(3,4)P2, respectively. Because insulin-stim- The parameter [PTP] was defined as the relative activity of
ulated conversion of PI(4,5)P2 to PI(3,4,5)P3 is mediated by protein tyrosine phosphatases in the cell. Thus [PTP] ⫽ 1
posed by the new equilibrium after maximal insulin stimu- etal muscle and other insulin-responsive tissues. J Biol Chem
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moderate and reasonable for introducing a time delay on the
15. Goldstein BJ, Li PM, Ding W, Ahmad F, and Zhang WR.
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This work was supported in part by the Whitaker/National Insti-
ulated GLUT4 glucose transporter recycling. A problem in mem-
tutes of Health Biomedical Engineering Summer Internship Pro-
brane protein subcellular trafficking through multiple pools.
gram (A. R. Sedaghat) and an American Diabetes Association Stu-
dent Mentor Award (to M. J. Quon). J Biol Chem 269: 17516–17524, 1994.
18. Holman GD and Cushman SW. Subcellular trafficking of
GLUT4 in insulin target cells. Seminars Cell Dev Biol 7: 259–
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