Data Dictionary for

Biomedical Data Warehouse

This document provides the variable name with referred to column in the sample data set.
Overview
This report provides summary data on each clinical and genome patients for the year 2015. These
summaries are compiled using the patient database, which is largely derived from the biomedical
department. The database is comprehensive for Medicare patients. The first page provides the
purpose and overview of the report. The following pages include the five entities which contain
detailed information for your biomedical data for analysis. The statistic reported as a single-year
period. The statistic is a calculated based on “val: Expression value” and “PA: P-present, A-
absent”.

Entities1: Clinical Identification Variables

Variable Name reported in the XLSX file

PATIENT_ID
PATIENT_SSN
PATIENT_NAME
PATIENT_GENDER
PATIENT_DOB
DISEASE_ID
DISEASE_NAME
DISEASE_TYPE
DISEASE_DESCRIPTION
DRUG_ID
DRUG_NAME
DRUG_TYPE
DRUG_DESCRIPTION
TEST_ID
TEST_NAME
TEST_TYPE
TEST_SETTING
 Entities 2: Sample Management

Variable Name reported in the XLSX file

SAMPLE_ID
SAMPLE_SOURCE
SAMPLE_AMOUNT
SAMPLE_DATE
MARKER_ID
MARKER_NAME
MARKER_TYPE
MARKER_LOCUS
MARKER_DESCRIPTION
ASSAY_ID
ASSAY_NAME
ASSAY_TYPE
ASSAY_SETTING
ASSAY_DESCRIPTION
TERM_ID
TERM_NAME
TERM_TYPE
TERM_SETTING

Entities 3: Microarray and Proteomic

Variable Name reported in the XLSX file
PROBE_ID
UID
PROBE_NAME
PROBE_DESCRIPTION
PROBE_ISQC
MEASUREUNIT_ID
MEASUREUNIT_NAME
MEASUREUNIT_TYPE
MEASUREUNIT_DESCRIPTION
Entities 4: Gene

Variable Name reported in the XLSX file

UID
GENE_SEQTYPE
GENE_ACCESSION
GENE_VERSION
GENE_SEQDATASET
GENE_SPECIESID
GENE_STATUS
GO_ID
GO_ACCESSION
GO_TYPE
GO_NAME
GO_DEFINITION
CLUSTER_ID
CLUSTER_NUM
CLUSTER_PATTERN
CLUSTER_TOOL
CLUSTER_TSETTING
CLUSTER_DESCRIPTION
DOMAIN_ID
DOMAIN_TYPE
DOMAIN_DB
DOMAIN_ACCESSION
DOMAIN_TITLE
DOMAIN_LENGTH
DOMAIN_DESCRIPTION
PROMOTER_PM_ID
PROMOTER_TYPE
PROMOTER_SEQUENCE
PROMOTER_LENGTH
PROMOTER_DESCRIPTION
Entities 5: Experiment

Variable Name reported in the CSV file

EXPERIMENT_ID
EXPERIMENT_NAME
EXPERIMENT_TYPE
PROJECT_ID
PROJECT_NAME
PROJECT_INVESTIGATOR
PROJECT_DESCRIPTION
PLATFORM_ID
PLATFORM_HARDWARE
PLATFORM_SOFTWARE
PLATFORM_SETTINGS
PLATFORM_DESCRIPTION
NORM_ID
NORM_TYPE
NORM_SOFTWARE
NORM_PARAMETERS
NORM_DESCRIPTION
PERSON_ID
PERSON_NAME
PERSON_LABNAME
PERSON_CONTACT
PROTOCAL_ID
PROTOCAL_NAME
PROTOCAL_TEXT
PROTOCAL_CREATEDBY
PUBLICATION_ID
PUBLICATION_MED_ID
PUBLICATION_TITLE
PUBLICATION_AUTHORS
PUBLICATION_ABSTRACT
PUBLICATION_DATE

************************************ ***********END*************************************************