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Journal of Molecular Graphics and Modelling
Journal of Molecular Graphics and Modelling
A R T I C L E I N F O A B S T R A C T
Keywords: The benefits of large reserves, wide distribution, and high combustion energy density of natural gas hydrates are
Molecular dynamics of great practical importance to alleviate the energy tension, enhance the existing energy system in China and
Methane hydrate reduce the greenhouse effect. The CO2 replacement method is a critical way to develop natural gas hydrate, while
Ammonia
traditional experimental methods are difficult to reveal the microscopic mechanism of the replacement system.
CO2 replacement
An MD (molecular dynamics) technique was utilized in this work to simulate the process of carbon dioxide
replacement of gas hydrates. This simulation investigates the effects of temperature, pressure, and CO2 purity
during the CO2 replacement process. CO2, different concentrations of CO2/H2O, and CO2/NH3 are used as the
injected fluid. The simulation results show that the influence of temperature on the CO2 replacement of natural
gas hydrate is more significant than that of pressure. Within the temperature and pressure range specified in the
simulation, H2O inhibits the replacement of CO2, owing to the inhibitory effect increasing as the concentration of
H2O increases; NH3 promotes the process of CO2 replacement under the temperature conditions of 250 K and
260 K, and the promotion effect becomes more significant as the concentration of NH3 increases. However,
adding NH3 inhibits the CO2 replacement process with hydrate when the temperature lifts to 270 K. These
findings provide new ideas to improve the efficiency of the CO2 replacement method and provide theoretical
insight for the engineering exploitation of hydrates.
* Corresponding author.
E-mail address: zzdong@xsyu.edu.cn (Z. Dong).
https://doi.org/10.1016/j.jmgm.2022.108394
Received 7 October 2022; Received in revised form 28 November 2022; Accepted 6 December 2022
Available online 10 December 2022
1093-3263/© 2022 Elsevier Inc. All rights reserved.
W. Li et al. Journal of Molecular Graphics and Modelling 119 (2023) 108394
water at the same temperature conditions, resulting in more stable CO2 model the process of CO2 replacement of natural gas hydrate with the
hydrates. At present, many scholars have conducted studies on the aid of the open-source LAMMPS software [25]. Standard SI-type gas
feasibility, replacement process, and influencing factors of CO2 hydrate, whose structural parameters and atomic coordinates are ob
replacement hydrate [17]. Since the low permeability of the hydrate tained through X-ray diffraction experiments [26], is used in this study.
phase significantly limits the replacement efficiency, researchers have Considering the periodic boundary conditions, standard SI-type gas
focused on increasing the CO2 diffusivity during the replacement process hydrate molecules are placed on both sides and CO2 and its composite
as a way to improve the CH4 production efficiency. Zhang et al. (2016) components are placed in the middle in the model. The model size is
proposed combining CH4/CO2 replacement and thermal stimulation to 36.09 Å × 36.09 Å × 150.11 Å. According to the length of the cell, the
obtain CH4 replacement rate and energy efficiency, and the results simulation box is split into various sections along the z-direction,
showed that the combined method was effective in improving CH4 re designated by regions A and B in Fig. 1, where region A is the hydrate
covery [18]. Khlebnikov et al. (2017) combined the CO2 replacement layer (crystal phase) and region B is the guest molecular region (gas
method with the thermodynamic hydrate inhibitor technique to accel phase). The model involved in this paper is shown in the following
erate the decomposition of CH4 hydrate. The results of core replacement figure.
experiments showed that the decomposition of CH4 hydrate exceeded In this simulation, the OPLS-AA model [27] is used to describe CH4
92% at the early injection of methanol solution plugs and continuous and NH3 and the TIP4P-EW model [28] to describe H2O, while the EPM2
injection of CO2 at later stages [19]. Shi et al. (2020) experimentally model [29] represents the CO2 molecule. The bond and angle of the
investigated the gas recovery and CO2 storage behavior of multilayer water molecule model are rigid using the SHAKE algorithm. Except for
methane hydrate deposits by using air or CO2-rich air replacement the interaction parameters between the C atom in the CH4 molecule and
methods in combination with decompression. The experimental results the O atom in the H2O molecule (C(CH4)–O(H2O)), which were obtained
showed that the pressure reduction of the injected gas significantly from the literature [30,31], using the Lorentz-Berthelot mixing rule
improved the methane production efficiency, but its improvement on calculated the interaction parameters between the various atoms [32],
CO2 storage performance was not as significant as that on methane re the specific calculation formula is shown as follow.
covery [20]. Sun et al. (2021) also proposed a CH4/CO2 replacement
σi + σj
method combined with pressure oscillation to improve CH4 recovery σ ij = (1)
2
and CO2 storage and analyzed the effects of different decompression
pressures, decompression times, and decompression frequencies, the √̅̅̅̅̅̅̅
εij = εi εj (2)
results showing that a higher decompression pressure (1.74 MPa) ach
ieved better results than a lower decompression pressure (1.50 MPa) for Table 1 presents information about molecular interactions, potential
the same experimental decompression rate [21]. energy parameters, etc.
What’s more, the replacement of CH4 molecules in hydrates by Periodic boundary conditions are employed during molecular dy
mixing CO2 with other gases has become a new trend in natural gas namics simulations. The equations of motion are solved for integration
hydrate extraction. Zhou et al. (2015) simulated the N2–CO2 mixture to using the Velocity-Verlet technique. The long-range force electrostatic
replace CH4 in methane hydrate [22]. The spectral analysis found that interactions are calculated using the Ewald summation method with an
nitrogen contributed to methane recovery in the small cage of SI hy accuracy of 1.0e-4. The non-bonded van der Waals forces use the 12-6
drate. However, the recovery of CH4 replaced with an N2–CO2 mixture Lennar-Jones potential function. Since the edge length of a typical
was not found to exceed the recovery with pure CO2. Wang et al. (2017) CH4 hydrate cell is about 12.03 Å, the truncation radius of the simula
proposed the replacement of natural gas hydrate using a CO2–H2 tion is set to 12 Å. The simulation took a total of 550 ps The first 50 ps
mixture. CO2–H2 gas mixture replacement can significantly boost CH4 are spent equilibrating the system, while the latter 500 ps are spent
production compared to pure CO2 replacement [23]. Chen, Wengang, calculating the physical quantities involved in the replacement process.
et al. (2021) used molecular dynamics to demonstrate that NH3 can be The model, using a Nose-Hoover constant temperature and pressure
used as a promoter for CO2 replacement of CH4 hydrate, which can regulator to maintain temperature and pressure stability is applied to
greatly improve the extraction efficiency of natural gas hydrate at spe perform a constant temperature and pressure system (NPT) simulation.
cific temperature conditions [24]. The time step is one fs, the temperature damping coefficient is 0.1 ps,
Although scholars have conducted relevant research on the feasi and the pressure damping coefficient is one ps. Each thermodynamic
bility of CO2 replacement, the microscopic mechanism of replacement, parameter of the system is output every 5000 steps during the simula
and factors influencing the replacement efficiency, the CO2 replacement tion, and the number of CH4 molecules in region B is counted at the end
method still faces challenges. The effect of the CO2 replacement method of the simulation.
is still limited, making it difficult to achieve economic feasibility for
field-scale applications. Most studies only evaluate the CO2 gas 3. Simulation scheme design and results analysis
replacement recovery, not the influence of the synergistic effects of
different gases on the CO2 replacement process. Therefore, this study not To analyze and study the effects of temperature, pressure, replace
only investigates the reaction process of CO2 replacement of CH4 hy ment component, and component concentration on CO2 replacement,
drate with different temperature and pressure conditions using the this study design five molecular dynamics simulation schemes with
molecular dynamics simulation method, but it also thoroughly in different temperature, pressure conditions, and replacement compo
vestigates the effects of H2O and NH3 molecules and their concentrations nents under the NPT ensemble. The specific parameters are shown in
on the CO2 replacement process. The structure of the article is as follows: Table 2.
Section 2 introduces the molecular dynamics approach used in this
study, including the molecular model and its force field selection and 3.1. Effect of temperature and pressure on the replacement process
specific simulation details; Section 3 presents the main results of this
study, including the analysis of the effects of temperature, pressure, To investigate the effect of temperature and pressure conditions on
replacement components and their concentrations on the CO2 replace the replacement reaction of the system (Scheme 1), the distribution of
ment process; finally, this study is discussed and summarized. CO2 number density and methane recovery are explored.
The model with a pressure of 5 MPa and different temperature
2. Model and simulation method conditions are used as an example in Scheme 1. Fig. 2 shows the density
distribution curve of carbon dioxide after the simulation. The vertical
The molecular dynamics simulation method is used in this work to coordinate of the density distribution curve represents the number of
2
W. Li et al. Journal of Molecular Graphics and Modelling 119 (2023) 108394
Table 1 Table 2
Lennard-Jones potential energy parameters of molecules and atomic-related Molecular dynamics simulation scheme design.
information. Schemes Temperature/K Pressure/MPa Displacement component
Molecular type Atomic type ε (kcal/mol) σ (Å)
Scheme 1 250/260/270/280/290 2/5/8 CO2 (100%)
CH4 C 0.0660 3.5000 Scheme 2 250/260/270/280/290 5 CO2 (80%) + H2O (20%)
H 0.0300 2.5000 Scheme 3 250/260/270/280/290 5 CO2 (80%) + NH3 (20%)
H2O O 0.1630 3.1640 Scheme 4 280 5 CO2 (50%) + H2O (50%)
H 0.0000 0.0000 CO2 (20%) + H2O (80%)
M Scheme 5 260 5 CO2 (50%) + NH3 (50%)
CO2 C 0.0559 2.7570 CO2 (20%) + NH3 (80%)
O 0.1600 3.0330 NH3 (100%)
NH3 N 0.1700 3.4200
H 0.0000 0.0000
to both sides of the system. Comparing the different curves, the carbon
dioxide entering the hydrate layer steadily increases as the temperature
certain particles per unit volume. The density distribution curve can rises from 250 K to 280 K. However, at 290 K, the carbon dioxide
indirectly reflect the transport of molecules during the simulation pro entering the hydrate layer decreases. Therefore, there is an optimal
cess. As the simulation progresses, the carbon dioxide eventually spreads temperature in the carbon dioxide replacement of CH4 hydrate, and it is
3
W. Li et al. Journal of Molecular Graphics and Modelling 119 (2023) 108394
Fig. 3. Comparison of the number of CH4 molecules replaced by CO2 under Scheme 1 conditions.
4
W. Li et al. Journal of Molecular Graphics and Modelling 119 (2023) 108394
5
W. Li et al. Journal of Molecular Graphics and Modelling 119 (2023) 108394
Fig. 7. Simulation of hydrate replacement process of CO2/NH3 mixture at 5 MPa and 260 K.
around the gas-solid junction. Therefore, it can also be concluded that methane molecules in the deeper hydrate layer will be replaced and
NH3 molecules penetrate more strongly than CO2 molecules in the hy developed. Meanwhile, the process of NH3 penetration into the hydrate
drate phase, and the pore channels formed by molecular penetration will layer also provides an effective channel for CO2 to enter the hydrate
reduce the mass transfer resistance of CH4 molecules diffusion, and layer. The methane molecules in the surface hydrate layer are replaced
6
W. Li et al. Journal of Molecular Graphics and Modelling 119 (2023) 108394
4. Discussion
5. Conclusion
Fig. 9. The number of methane replaced by the CO2/NH3 mixture at different
In this paper, the molecular dynamics method was used to establish
temperatures in region B.
7
W. Li et al. Journal of Molecular Graphics and Modelling 119 (2023) 108394
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