Professional Documents
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Biochemistry Series:
Set 1
Version: 1.0
Levels of
Organisation
in the grade
10 syllabus
Level of organisation
Organism
Tiger Living things can be
organized into several
different levels or tiers of
structure. The most basic
of these is the molecular
level.
Cellular level
Heart muscle cells
Organelle level
Mitochondrion
Molecular level
Amino acid -lysine
Another example…
https://en.wikipedia.org/wiki/Biological_organisation
NOTE: slides 5 -18 = Interest only
Atoms
Are the smallest
particles of a
substance that
cannot be
subdivided into
any other
substance e.g. https://www.ducksters.com/science/the_atom.php
one atom of
carbon.
Elements
Element: a pure substance made up of only one
kind of atom. e.g. chlorine, hydrogen, carbon.
All matter is made up of elements.
https://www.thoughtco.com/printable-periodic-tables-p2-608850?utm_source=pinterest&utm_medium=social&utm_campaign=shareurlbuttons_nip
Molecules
• Atoms combine to form molecules.
• A molecule is the smallest unit of a substance
that has all of the physical and chemical
properties of the substance, and that is
composed of two or more atoms.
e.g. O2 - a molecule of oxygen. OTHERS?
https://scied.ucar.edu/oxygen-molecule
Compounds
In living organisms,
molecules combine in
specific ways to form
organelles and other
structures in the cell.
For example???
A compound is a substance
in which the molecules are
made up of atoms of two or
more elements that are
combined chemically e.g.
water ( H2O ).
https://science4fun.info/molecules/
Biological Molecules
All objects are made up of millions of
molecules too small to see with the Water (H2O)
molecules
naked eye.
For example, a glass of water contains
millions of water molecules.
Biological Molecules
Water is not always pure, and may contain other molecules.
When one or more substances are added together, a mixture
is formed.
Na+
Cl–
Na+ Cl–
Na+
Cl–
Cl–
Na+
This mixture
contains salt
(NaCl) and water
(H2O).
Types of Biological Molecules
The molecules that make up living things can be grouped
into :
Water Proteins Lipids
Also
vitamins
and
Nucleic acids Carbohydrates
minerals
The Importance
of Biological
Molecules
An understanding of the
structure and function of
biological molecules is
necessary in many branches of
biology, especially biochemistry,
physiology, and
molecular genetics.
Biological Formulae
Biological molecules can be portrayed by:
molecular formula
structural formula
Structural Formula
Molecular Formula
The structure of a molecule
The molecular formula can be conveyed by a
expresses the number of molecular model.
atoms in a molecule, but
does not convey its
structure.
C3H7O2S
Molecular formula for the This space filling model shows
amino acid cysteine the structural formula for the
amino acid cysteine
Illustrating the Structure
of Molecules
Sticks Lines Spheres Surface
Structural formula
α glucose (ring form)
Structural formula
(straight form)
Ball and stick model
Important Biological
Molecules
Carbon
Biological molecules that contain
carbon are said to be organic
compounds.
Most cellular material is organic. Hydrogen
Bonds act as a
chemical glue to hold
atoms together.
Bond
Biochemistry – refers to
the chemistry of living
organisms
Organic and inorganic
compounds (grade 10)
Substances can be classified into two
types – organic OR inorganic
substances / compounds.
Organic vs. Inorganic
molecules (Grd 10)
Organic vs. inorganic
molecules
Organic Inorganic
• Have C plus H, O, N and sometimes P, • Usually have no C.
S, Fe, etc…
• eg. carbon dioxide
• Are normally large, complex molecules. (CO ), H 0, 0 ,
2 2 2
http://www.bozemanscience.com/carbohydrates
Lipids (TB 28-29)
Are organic compounds with are oily, greasy, or waxy.
Also called TRIGLYCERIDES.
Contain C ,H and O atoms, with many more H atoms than O atoms, i.e.
the ratio of H:O is greater than 2:1.
Are relatively insoluble in water; tend to be hydrophobic (water repellent).
Lipids are soluble in organic solvents eg.ethanol and ether.
Typical lipids consist of fatty acids and glycerol (see below).
H O
H C OH OH C CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2
O
H C OH OH C CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2
O
H C OH OH C CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2 CH2
O H H H H H H H H H H H H H H H
C C C C C C C C C C C C C C C C H
H H H H H H H H H H H H H H H
Palmitic acid is a
saturated fatty acid.
Unsaturated Fatty Acids
Unsaturated fatty acids have some double bonds between their carbon
atoms (all of the spaces are not taken by hydrogen atoms).
Lipids with more unsaturated fatty acids are oils and tend to be liquid at room
temperature.
The unsaturated nature causes kinks in the straight chains. When aligned
in a lipid molecule, the kinked fatty acids do not pack closely together;
hence the more fluid nature of oils.
O H H H H H H H H H H H H H H H H H H
C C C C C C C C C C C C C C C C C C C H
H H H H H H H H H H H H H H
Linoleic acid is an
unsaturated fatty acid.
Kink
Phospholipids
If one of the fatty acid groups is replaced by a phosphate group, the
molecule is known as a phospholipid. A phospholipid consists of:
a glycerol molecule
two fatty acid chains Found in cell
membranes
a phosphate molecule
Hydrocarbon tail:
hydrophobic part of
the molecule.
Cholesterol and heart
disease (TB 28)
• Cholesterol in the body:
• More recently been found that high levels of cholesterol does not
increase the incidence of heart attacks, but low levels of HDL
(good cholesterol) does!
Proteins
Proteins are made up of molecules
called amino acids (eg proline
shown below). Proteins are made up
Plants can manufacture all the amino acids
of C, H, O and N, sometimes P, S and
they require, but animals must obtain a
Fe (iron) atoms.
certain number of ready-made essential
amino acids from their diet.
proteins.
Amino Acids - interest
NH2 C COOH
Amino
group H Carboxyl group
makes the molecule
behave like a weak
acid
Hydrogen
atom
Amino Acids
NH2
CH2
CH2
SH CH2 COOH
CH2 CH2 CH2
H H H
TEN of these must be obtained from our diet. These are called essential amino
acids (marked by a ◆ in the table below):
It is irreversible.
Heavy metals
Strong acids and alkalis
The enzyme
changes shape,
forcing the substrate
NEW THEORY molecules to
combine.
More recent studies have
revealed that the process is
much more likely to involve an
induced fit.
The resulting end
product is released
by the enzyme
which returns to its
normal shape, ready
to undergo more
reactions.
Effect of Temperature
Enzymes often have a
Optimum temperature
narrow range of for the enzyme
conditions under which
they operate properly.
For most plant and animal
enzymes, there is little
Rapid
activity at low
Rate of reaction
denaturation
temperatures. at high
Too cold for the temperatures
enzyme to
Enzyme activity increases operate
with temperature, until the
temperature is too high for
the enzyme to function.
(See diagram right).
At this point, enzyme
denaturation occurs and
the enzyme can no Temperature
longer function. (°C)
The pH Scale Battery acid 0
Lemon juice
1
The pH scale: 2
has a scale range from 0 to 3
14.
4 Tomatoes
Milk
5
7 is neutral
6
0 - 6.9 is acidic 7 Blood
7.1 - 14 is basic 8
10
11
12
Sodium
Ammonia-based 13 hydroxide
cleaning fluids solution
14
Biological pH
Most biological fluids have a pH close to neutral
(e.g. blood is 7.4, urine range 6.5 -8.0).
Stomach acid is an exception at pH 1.5. In this case,
mucus secretions protect the stomach lining from
damage.
Enzyme activity
Pepsin is a stomach enzyme
and has an optimal working
pH of 1.5, which is suited for
the very acidic conditions of
the stomach.
Urease breaks down urea
and has an optimal pH of 1 2 3 4 5 6 7 8 9 10
near neutral. See diagram
right. Acid Alkaline
pH
Video link:
Enzymes often work over a range of
http://study.com/academy/les pH values, but all enzymes work best
son/denatured-enzyme- at an optimum pH where their activity
definition-lesson-quiz.html rate is fastest.
Introduction to
Nucleic Acids
Nucleic acids are involved with the
transmission of inherited or genetic
information in living organisms.
There are two main types:
Deoxyribonucleic acid (DNA)
Ribonucleic acid (RNA)
Nucleic acids are long threadlike
molecules made up of many units
called nucleotides.
DNA
DNA extraction from
bananas INTEREST
X-Ray Diffraction INTEREST
Watson and Crick INTEREST
Hydrogen
bonds
RNA vs DNA Interest
• RNA is single stranded and DNA is double stranded forming a
twisted helix – DNA double helix.
• You will see how RNA assists DNA in grd 12 to help cells to
produce proteins!!
Vitamins TB 108
• Are organic compounds known as micronutrients –
needed in small amounts by the body for maintenance of
health. Lack of certain vitamins result in specific
diseases/disorders.
• Have NO energy value. Often assist enzymes to work
(i.e. act as coenzymes).
• Most cannot be made by the body – found in fresh fruit
and vegetables (plants can synthesise their own
vitamins).
• Vitamins and minerals often work together –
eg. bones need vitamin D and calcium.
Vitamins table INTEREST
Vitamins continued…
• More than 20 vitamins are important to nutrition.
• Fat soluble vitamins A, D, E and K – stored in body.
• Water soluble vitamins eg. B and C cannot be stored,
need to be consumed daily.
• (SEE TABLE TB 33 for examples)
• DO Activity page 34 Questions 1 to 4 only
Minerals, Inorganic Ions (Salts)
INTEREST
Ion Name Biological role
Ice is less dense than water Ice floats and also insulates the underlying water
High surface tension Water forms droplets on surfaces and runs off
Low viscosity Water flows through very small spaces and capillaries
Liquid at room temperature Liquid medium for aquatic life and inside cells
Many substances can dissolve in water Medium for the chemical reactions of life (metabolism).
(it is classified as a universal solvent) Water is the main transport medium in organisms.
Biologically Important
Properties of Water Interest
Property of Water Significance for life