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Biological Control 86 (2015) 14–19

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Biological Control
journal homepage: www.elsevier.com/locate/ybcon

Evaluation of bacterial antagonists of Ralstonia solanacearum, causal


agent of bacterial wilt of potato
Zeinab Kheirandish, Behrouz Harighi ⇑
Department of Plant Protection, University of Kurdistan, Sanandaj, Iran

h i g h l i g h t s g r a p h i c a l a b s t r a c t

 Pseudomonas and Paenibacillus strains


showed plant growth promotion
effects on potato plants.
 Paenibacillus strain showed
antagonistic potential against
Ralstonia solanacearum.
 Pseudomonas strains showed
biocontrol activity against Ralstonia
solanacearum.

a r t i c l e i n f o a b s t r a c t

Article history: Bacterial wilt of potato caused by Ralstonia solanacearum is one of the most destructive diseases in
Received 20 April 2014 Kurdistan province, Iran. The objective of the present study was to evaluate antagonistic effects of some rhi-
Accepted 25 March 2015 zobacteria isolated from the rhizosphere of potato plants against R. solanacearum, the agent of potato
Available online 6 April 2015
bacterial wilt. A total of 52 rhizobacteria were isolated and screened for in vitro antagonistic activity against
R. solanacearum. Seven isolates with inhibiting effects of the pathogen were identified by phenotypic prop-
Keywords: erties and partial sequencing of 16s rRNA as Pseudomonas fluorescens Pf11, P. fluorescens Pf16, Pseudomonas
Ralstonia solanacearum
putida Pp17, Paenibacillus sp. Pb28 and Enterobacter sp. En38, Pseudomonas fluorescens Pp23 and Serratia sp.
Biocontrol
Bacterial antagonist
Se40. Strains Pf11, Pf16, Pp17 and Pb28 significantly inhibited the growth of the pathogen. Strains En38,
Iran Pp23 and Se40 showed a moderate or weak inhibition. During greenhouse study, strains were evaluated
for their effects in reducing of disease and increasing biomass of potato plants. In according to greenhouse
experiment results, isolates Pb28, Pp17 and Pf11significantly reduced disease by 55.56%, 51.50% and
38.58%, respectively. In addition, plant biomass significantly increased in plants treated with Pb28, Pp17,
Pf11 and Pf16, compared to the control. Therefore, this study shows that these four strains have potential
to be used as biocontrol agents against R. solanacearum. To confirm their effectiveness as commercial
biocontrol agent, it is necessary to evaluate their efficiency in the field conditions in the next studies.
Ó 2015 Elsevier Inc. All rights reserved.

1. Introduction a great number of diseases, among which wilt caused by


Ralstonia solanacearum (Smith) (Yabuuchi et al., 1995) is known
Potato (Solanum tuberosum L.) is one of the most important as one of the most destructive agents in temperate regions of
crops growing in Iran, and about 173000 hectares of agricultural Iran (Azadvar and Rahimian 2006; Maghooli et al., 2004;
lands are devoted to potato cultivation. The crop is susceptible to Irandoust et al., 2008). Because of the widespread geographic
distribution, high survival properties and unusual wide host range
⇑ Corresponding author. Fax: +98 8733620553. of the pathogen, control methods such as crop rotation, field
E-mail address: BHarighi@uok.ac.ir (B. Harighi). sanitation and use of resistant varieties provide limited success.

http://dx.doi.org/10.1016/j.biocontrol.2015.03.007
1049-9644/Ó 2015 Elsevier Inc. All rights reserved.
Z. Kheirandish, B. Harighi / Biological Control 86 (2015) 14–19 15

R. solanacearum can survive in latently infected potato tubers, reduction, growth at different temperatures, etc. were character-
perennial weed hosts and in soil for more than one year. Thus, crop ized according to standard methods (Schaad et al., 2001) and their
rotation with non-host plants should be done for several years identification was further confirmed by partial nucleotide
(Van Elsas et al., 2000). Chemical control of the disease is usually sequencing of 16S rRNA gene using PCR with rP1/fD2 primers
ineffective and soil fumigation has slight or no effect (Murakoshi (Weisburg et al., 1991). The PCR products were sequenced using
and Takahashi, 1984). In some plants such as tomato, application an ABI3730XL DNA sequencer (Applied Biosystems). The 16s
of the chemical elicitor acibenzolar-S-methyl can reduce bacterial rRNA sequences obtained in this study were deposited in
wilt incidence in cultivars with moderate resistance, but is ineffec- GenBank under the accession numbers listed in Table 1. All
tive in susceptible cultivars (Pradhanang et al., 2005). Several resis- sequences were compared with NCBI nucleotide sequence data-
tant cultivars are available but strain diversity of the pathogen base using blast program. Nucleotide sequences were aligned using
turns resistance unstable in different countries (Hartman and the ClustalW available in MEGA 5.2 program (Tamura et al., 2011).
Elphinstone, 1994; Kim-Lee et al., 2005). Therefore, biological con- A phylogenetic tree was constructed by the neighbour-joining
trol is an alternative method to resolve some of these difficulties. method (bootstrap analysis with 1000 replicates were conducted)
Several researches have been carried out to find biocontrol agents with the same program.
to reduce bacterial wilt severity. Plant growth-promoting rhi-
zobacteria (PGPR) colonize root surfaces and are present in the rhi- 2.3. In vitro assay of rhizosphere bacteria
zosphere of many plant species (Kloepper et al., 1999). These
beneficial microorganisms can increase plant growth and also pro- 2.3.1. Screening of rhizobacteria against bacterial pathogen
tect plant from infection of plant pathogens. The mechanisms of Three hundreds lL of the pathogen suspension (about
disease control by beneficial bacteria include the production of 2  108 CFU/mL) was poured into the plates and maintained in a
antibiotics, hydrogen cyanide, siderophores and competition for laminar flow hood for 5 min. After which, paper disc (about
nutrients (Van Elsas et al., 2000). The objectives of this research 10 mm) was immersed in each suspension of rhizobacteria spec-
was to investigate the antagonistic potential of rhizobacteria iso- trophotometrically adjusted (absorbance at 600 nm) to concentration
lated from potato growing fields against R. solanacearum under lab- of about 108 CFU/mL and was spotted at the pathogen-inoculated
oratory and greenhouse conditions, and evaluate the effect of plates. The plates were incubated at 28 °C for 48–72 h and the width
antagonists on potato plant biomass. of the inhibition zones was measured. Sterile water spotted in the
plates with the pathogen was used as control.

2. Material and methods


2.3.2. Protease, hydrogen cyanide and siderophore production by
rhizobacteria
2.1. Isolation, characterization and identification of bacterial pathogen
Bacterial isolates were tested for protease production using skim
milk (SKM) agar medium (Chakravarty and Kalita, 2012). The iso-
Potato plants with typical symptoms of bacterial wilt were col-
lates were spot inoculated into SKM medium and plates were incu-
lected from potato fields in various locations of Kurdistan province,
bated at 28 °C for 48 h. Production of clear halo zone around the
western Iran. Small pieces of tuber showing brown rot symptoms
bacterial colony was taken as evidence of protease production.
were excised, after surface sterilization with 0.25% sodium
Production of Hydrogen cyanide (HCN) by bacteria was tested
hypochlorite for 30s, rinsed in sterile distilled water. Each piece
according to the method described by Alstrom (1987). One hun-
was macerated in 1 ml sterile water and the resulting suspension
dred lL of bacterial suspension was streaked onto plates contain-
was streaked onto casamino acid-peptone-glucose + 2,3,5-triph-
ing nutrient agar medium. Plates sealed with parafilm were
enyl tetrazolium chloride (CPG + TZC) medium (Kelman, 1954).
incubated in an inverted position at 26–28 °C with picric acid indi-
The Plates were incubated at 28 °C for 72 h. After that, the colonies
cator papers placed inside the lids.
typical of R. solanacearum were streaked on the same medium to
Siderophore production test was done according to a method
get pure colonies. Phenotypic properties of the isolates were
previously described (Kraus and Lopper, 1990). Rhizosphere bac-
characterized using standard procedures (Hayward, 1964;
teria were spotted on King B medium containing 1000 lM FeCl3
Yabuuchi et al., 2005). Identification of bacterial isolates was fur-
and incubated at 26–28 °C for 48 h. After that, bacterial colonies
ther confirmed by polymerase chain reaction (PCR) using species-
were wiped off from the plates using sterile cotton swap.
specific 759/760 primers according to a method previously
Subsequently, pathogenic bacterial suspensions were spread on
described (Opina et al., 1997).
media and incubated at 26–28 °C for 24 h. Inhibition of pathogenic
bacteria around spots indicated siderophore production.
2.2. Isolation, characterization and identification of bacterial
antagonists 2.4. Greenhouse experiment

The potential bacterial antagonists were isolated from the rhi- A substrate mixture including field soil:sand:compost
zosphere of healthy potato plants from different locations of (1.25:1.25:0.5) was prepared and autoclaved at 121 °C for 2 h.
Kurdistan province during July to September 2011 and 2012. Soil Pots were sterilized with 1% sodium hypochlorite and three kilo-
samples were collected from root zone of potato plants, placed in gram of the substrate was located into each pot. Pieces of potato
plastic bags and kept in refrigerator until used. One gram of each tuber (var. Fontane) were surface sterilized, air-dried and dipped
soil sample was suspended in 100 ml sterile–distilled water, serial into aqueous suspension of antagonist (2  108 CFU/mL) for 1 h,
dilutions of 101–105 were prepared and 0.1 ml of each dilution then planted in pots. After 24 h, 200 ll of each pathogenic bacterial
was inoculated in King’s Medium B Agar (KMB) plates (King suspension (108 CFU/mL) was added to pots.
et al., 1954). The plates were incubated at 28 °C for 48–72 h and Tubers dipped in sterile distilled water and pathogenic bacterial
observed under UV transilluminator. Colonies showing fluorescent suspension was planted as negative and positive controls, respec-
pigment and some non-fluorescent colonies were subcultured in tively. The pots were placed in a greenhouse (26–28 °C, RH30%,
KMB to get pure cultures. Biochemical and physiological properties 12 h/ 12 h photoperiod). Effects of bacterial antagonists on plant
of bacterial antagonists such as: gram reaction, oxidase activity, fresh weight of shoots and roots were measured after 60 days.
levan production, arginine dihydrolase, gelatin hydrolysis, nitrate Plants then cut above ground, shoots and roots were oven-dried
16 Z. Kheirandish, B. Harighi / Biological Control 86 (2015) 14–19

Fig. 1. Agarose gel electrophoresis of PCR product using R. solanacearum species-specific primer pairs 759/760. Lane1-6: R. solanacearum isolates, lane M: 1Kb DNA ladder.

Fig. 2. The phylogenetic tree shows the position of antagonistic strains among the type strains of the species of the genera Enterobacter, Paenobacillus, Pseudomonas and
Serratia.

at 75 °C for 48 h and dry weight was measured. The relative of dis- %reduction of disease
ease incidence and biocontrol efficacy was calculated using the fal- ¼ ½ðdisease incidence in control pots  disease incidence in
lowing formula (Algam et al., 2013; Seleim et al., 2011):
antagonist treated potsÞ=disease incidence in control  100:
%disease incidence ¼ ðnumber of wilted leaves per pot=
total number of leaves per potÞ  100
Z. Kheirandish, B. Harighi / Biological Control 86 (2015) 14–19 17

2.5. Statistical analysis Table 2


In vitro inhibition of growth of R. solanacearum by bacterial antagonists.

Greenhouse experiments were carried out with a factorial Strains Mean diameter of inhibition Degree of
arrangement in a completely randomized design with three repli- zone (mm)a antagonismb
cations. Data analysis was performed using the SAS software pro- Pf11 10.87b ++
gram and comparison of means was done with least significant Pf16 10.88b ++
difference (LSD) test at 5% level. Pp17 18.55a +++
Pp23 8.11c ++
Pb28 18.22a +++
En38 10.77b ++
3. Results Se40 3.99d +
R. solanacearum + sterile– 
3.1. Identification of bacterial pathogen distilled water
a
Values in the same column with the same letter(s) are not significantly different
In total, eight pathogenic isolates (Sa3, Sa35, Ta4, Kr11, Kr24, as determined by the LSD test (P = 0.01).
b
Kr48, Ba26, Pa41) were obtained from wilted potato plants in vari- Weak ‘+’ (1–5.99 mm), moderate ‘++’ (6–10.99 mm), strong ‘+++’ (11–20 mm)
inhibition effects on the growth of the pathogen.
ous locations. Isolates produced mucoid, irregular white colonies
with pink centre on TZC medium. Based on phenotypic properties
all strains were identified as R. solanacearum biovar 2.
Table 3
Furthermore, PCR using the R. solanacearum species-specific primer Siderophore, hydrogen cyanide and protease production by potential antagonistic
pairs 759/760 amplified the expected single 282-bp DNA fragment isolates.
from all the strains tested (Fig. 1). All strains were tested for
Strains Siderophore Hydrogen cyanide Protease
pathogenicity on potato and wilting was developed 14–21 days production production production
after inoculation.
Pf11 +  +
Pf16 +  +
Pp17 + + +
3.2. Identification of bacterial antagonists Pp23 +  +
Pb28   +
A total of 52 rhizobacteria were isolated from the rhizosphere of En38 +  
Se40  + 
potato plants. Isolates were preliminary identified by biochemical
and physiological characteristics and separated into six groups. + = positive,  = negative.
During preliminary screening of strains, seven with inhibiting
effects of the pathogen in vitro were selected from each group 3.4. Protease, hydrogen cyanide and siderophore production by
and further identified by partial sequencing of 16s rRNA rhizobacteria
(Table 1). The phylogenetic tree (Fig. 2) shows the position of
strains among the type strains of the species of the genera All strains, except Paenibacillus sp. Pb28 and Serratia sp. Se40
Enterobacter, Paenibacillus, Pseudomonas and Serratia. These strains were able to produce siderophore in media containing 1000 lM
were selected as potential bacterial antagonists. FeCl3. Also all strains, except Enterobacter sp. En38 and Serratia
sp. Se40 produced a clear halo zone on SKM medium, indicating
protease production. Among strains tested for Hydrogen cyanide
3.3. In vitro antagonistic activity of rhizobacteria against R. production P. putida Pp17 and Serratia sp. Se40 revealed a positive
solanacearum reaction (Table 3).

Among seven bacterial antagonists, Pseudomonas fluorescens 3.5. Greenhouse experiment


Pf11, P. fluorescens Pf16, Pseudomonas putida Pp17, Paenibacillus
sp. Pb28 and Enterobacter sp. En38 could significantly inhibit the Effects of antagonists on fresh and dry weight of shoots and
pathogen growth with mean inhibition diameter of 10.87, 10.88, roots are summarized in Table 4. There were significant differences
18.55, 18.22 and 10.77 mm, respectively. P. fluorescens Pp23 and among treatments in all the parameters evaluated. P. putida Pp17
Serratia sp. Se40 showed moderate or weak inhibition effects on showed the maximum effect on increasing both fresh and dry
the growth of the pathogen, with mean inhibition diameter of weight of shoot and root of plants. However, Serratia sp. Se40
8.11 and 3.99 mm, respectively (Table 2). was the least effective antagonist in all above parameters mea-
sured (Table 4). Surprisingly, Paenibacillus sp. Pb28 and P. putida
Pp17 were the most successful antagonists in reduction of disease
Table 1
Identification of rhizobacterial isolates by partial sequencing of 16s rRNA. by 55.56% and 51.50%, respectively compared to Serratia sp. Se40
with the least effect (Table 5).
Isolate 16s rRNA sequence % similarity GenBank
(50 ? 30 ) accession
no. 4. Discussion
Pf11 1-273, 452-1424bp 98% with Pseudomonas KP635387
fluorescens Bacterial wilt is one of the most destructive diseases of potato
Pf16 1-337, 509-1429 99% with Pseudomonas KP635388 crops worldwide. The causal agent, R. solanacearum also affect a
fluorescens
wide range of other crops such as tomato (Lycopersicon esculentum
Pp17 44-303, 349-1437 99% with Pseudomonas KP635389
putida Mill.), tobacco (Nicotiana tabacum L.), banana (Musa paradisiacal L.),
Pp23 4-258, 591-1428 98% with Pseudomonas KP635390 peanut (Arachis hypogaea L.), etc. in almost every region in the
fluorescens warm temperate, semitropical, tropical and cool climates of the
Pb28 1-251, 746-1428 99% with Paenibacillus sp. KP635386 world (Hayward, 1994). This study showed that R. solanacearum
En38 9-265, 723-1437 99% with Enterobacter sp. KP635385
Se40 6-459, 745-1437 99% with Serratia sp. KP635391
biovar 2 are responsible for bacterial wilt of potato in Kurdistan
province. This biovar had distributed worldwide and had been
18 Z. Kheirandish, B. Harighi / Biological Control 86 (2015) 14–19

Table 4
Efficacy of bacterial antagonists for potato growth promotion under greenhouse condition.

Treatment Fresh weight of shoot (g) Fresh weight of root (g) Dry weight of shoot (g) Dry weight of root (g)
a
Pf11+ R. solanacearum 34.25ab ± 1.18 4.52abc ± 0.28 4.78ab ± 0.23 0.91abc ± 0.05
Pf16+ R. solanacearum 34.83ab ± 1.02 4.47abc ± 0.21 4.88ab ± 0.20 0.90abc ± 0.10
Pp17+ R. solanacearum 36.88a ± 0.3 4.99a ± 0.16 5.17a ± 0.11 1.04ab ± 0.17
Pp23+ R. solanacearum 31.93bc ± 1.06 3.93cde ± 0.02 4.47bc ± 0.22 0.78bc ± 0.06
Pb28+ R. solanacearum 33.85ab ± 2.08 4.32bcd ± 0.17 4.69ab ± 0.31 0.88bc ± 0.04
En38+ R. solanacearum 31.21bc ± 0.18 3.74def ± 0.21 4.37bc ± 0.04 0.79bc ± 0.04
Se40+ R. solanacearum 29.24c ± 0.15 3.93ef ± 0.15 4.09 cd ± 0.07 0.79bc ± 0.05
R. solanacearum 14.92d ± 1.03 2.13 g ± 0.17 2.04e ± 0.22 0.42d ± 0.06
Controlb 29.75c ± 0.69 3.18f ± 0.03 3.74d ± 0.10 0.72c ± 0.01
a
Values in the same column with the same letter(s) are not significantly different as determined by the LSD test (P = 0.05).
b
Sterile distilled water only.

Table 5 biocontrol activity against tomato bacterial wilt had been reported.
Effect of bacterial antagonists on disease incidence and biocontrol efficacy under This strain could produce hydrogen cyanide, siderophore and pro-
greenhouse condition.
tease but the main active compound against R. solanacearum was
Treatment Disease incidence (%) Reduction of disease (%) identified as 2,4-diacetylphloroglucinol (Zhou et al., 2012). There
Pf11+ R. solanacearum 40.94ba ± 1.9 38.58 are several previous reports about antimicrobial activity of
Pf16+ R. solanacearum 49.99c ± 1.52 25.00 Paenibacillus strains against phytopathogenic bacteria and fungi
Pp17+ R. solanacearum 32.33a ± 1.59 51.50 including R. solanacearum (Algam et al., 2010; Aliye et al., 2008;
Pp23+ R. solanacearum 54.45c ± 2.85 18.31 von der Weid et al., 2003). Our results of in vitro experiment sug-
Pb28+ R. solanacearum 29.62a ± 0.71 55.56
En38+ R. solanacearum 52.82c ± 2.71 20.76
gest that inhibitory activity of Paenibacillus sp. Pb28 could be due
Se40+ R. solanacearum 54.83c ± 1.86 17.74 to production of protease. This finding is in agreement with von
R. solanacearum 78.40d ± 1.57 – der Weid et al. (2003), where they reported that antagonistic activ-
a ity of Paenibacillus peoriae strain NRRL BD-62 against broad spec-
Values in the same column with the same letter(s) are not significantly different
as determined by the LSD test (P = 0.05). trum of bacteria and fungi was mediated by protease production.
Enterobacter sp. En38 and Serratia sp. Se40 strains showed moder-
ate or weak inhibition effects, respectively in in vitro assay.
reported from several locations in Iran as biovar 2/race 3. (Azadvar Antagonistic activity of Enterobacter sp. En38 and Serratia sp.
and Rahimian, 2006; Nouri et al., 2009). R. solanacearum can sur- Se40 strains against pathogen might be result of production of
vive in soil for long periods of time. Due to its wide host range siderophore or hydrogen cyanide, respectively. The in vitro antago-
and heterogenous nature of pathogen disease control of this patho- nistic activity of Serratia strain was previously reported by Aliye
gen is difficult. Then biological control by using rhizobacteria is an et al. (2008) where Serratia marcescens BS-wly had weak inhibition
efficient method for disease management. During potato plant effect on R. solanacearum. A positive of in vitro antagonistic activity
growth, rhizobacteria quickly colonize the underground part of of Serratia sp. XY21 strain and the field biocontrol efficacies against
the plants as well as the rhizosphere. More than sixty bacterial R. solanacearum was found by Xue et al. (2013). Weak antagonistic
genera have been identified in different potato growing rhizo- activity of S. marcescens SM1BA had reported by Kurabachew and
sphere. Among them, the species in the genus Pseudomonas such Wydra (2013) but compared to our results, analysis of in vitro pro-
as P. fluorescens and P. putida also to lesser extent, strains belongs duction of siderophore and hydrogen cyanide revealed positive and
to genera Paenibacillus, Serratia and Enterobacter have high interest negative results for SM1BA strain, respectively. In our in vivo
as they play a role in plant protection (Diallo et al., 2011). experiments, Paenibacillus sp. Pb28 and P. putida Pp17 significantly
Furthermore other bacteria belongs to genera Bacillus had biocon- reduced disease incidence by 55.56% and 51.50%, respectively.
trol efficacy on bacterial wilt of tomato plants under greenhouse Moreover, both strains also enhanced the plant biomass, compared
conditions (Chen et al., 2013; Tan et al., 2013). In this study several to the control. Surprisingly, P. fluorescens Pf11 and P. fluorescens
bacteria were isolated from the rhizosphere of potato plants. Pf16 with lower inhibition effects in vitro experiments and also
Among them, seven selected strains were further studied in vitro reduction of disease showed high biomass production compared
and in vivo for their activity against the pathogen showing different to the control. The effects of both P. fluorescens strains on enhanc-
degree of antagonism. Among the strains tested, P. putida Pp17, ing biomass production, in spite of their ineffectiveness in reducing
Paenibacillus sp. Pb28, P. fluorescens Pf11 and P. fluorescens Pf16 disease might be attributed to their production of plant growth
had the highest growth inhibition zone of the pathogen. Our stimulating substances more than direct inhibitory effects on
results of the in vitro antibiosis suggest that, inhibition effects of pathogen. Kloepper et al. (1980), Aspiras and Cruz (1986), Henok
these antagonists might be due to siderophore, hydrogen cyanide et al. (2007) and Lemessa and Zeller (2007) reported that strains
and or protease production. P. putida Pp17 with the highest inhibi- of fluorescent pseudomonads significantly increased the plant bio-
tory activity was the only strain be able to produce siderophore, mass. This could be results of induction of systemic resistance, pro-
Hydrogen cyanide and protease in vitro experiments confirming duction of siderophore, and competition advantage to root
this hypothesis. There was a significant difference in in vitro inhibi- colonization by antagonists. Among the seven antagonistic bacteria
tion of pathogen by the two P. putida Pp17 and P. fluorescens Pp23 tested in greenhouse experiment, the highest degree of reduction
strains. This difference might be due to inability of Pp23 strain to of disease was recorded by isolate Paenibacillus sp. Pb28. Also plant
produce of hydrogen cyanide. The in vitro antagonistic activity of biomass (fresh and dry weight of shoot and root) was increased by
P. fluorescens and P. putida strains against R. solanacearum has been this strain, compared to control. The in vivo antagonistic activity of
previously reported (Aliye et al., 2008; Kurabachew and Wydra, Paenibacillus strains and increasing effects on plant biomass under
2013; Ran et al., 2005). Paenibacillus sp. Pb28 showed high inhibi- greenhouse conditions was reported by Aliye et al. (2008). The
tory activity against pathogen next to P. putida Pp17. Other pseu- same results had been reported on tomato plants (Algam et al.,
domonas species such as P. brassicacearum strain J12 with 2010). In conclusion, results presented in this study showed that
Z. Kheirandish, B. Harighi / Biological Control 86 (2015) 14–19 19

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