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interactions and air quality monitoring. natural world at rates that are difficult Primer
By surveying species across different to monitor with traditional methods.
habitats and taxonomic groups, eDNA
is used to retrieve information on
What we are experiencing now is
that eDNA could supplement, and
Roost making in
the community structure of poorly sometimes even replace, traditional bats
studied habitats, to extend taxonomic monitoring methods that are currently
resolution or diversity estimates of used to inform species and ecosystem
past studies, and to document how management decisions. Filling in Rachel A. Page1,*
communities shift through time in the knowledge gaps concerning and Dina K.N. Dechmann1,2,3,4
response to environmental change, the ecology of eDNA and further
pollution, or restoration efforts. Owing optimizing or resolving technical Structures created by animals can
to its success in detecting species and methodological limitations serve many purposes. Spiders weave
in low concentrations, eDNA is often (e.g., completing our DNA reference intricate webs to trap prey; beavers
used to keep track of the spread of databases, limiting false positives and engineer complex networks of dams
harmful invasive species or to identify negatives) are the most important next to alter waterways; male bower birds
habitats of critical importance to steps. These will allow us to improve construct and decorate elaborate
endangered and otherwise difficult to data interpretation and expand bowers to attract mates. Animal
detect species. Lastly, thanks to the its potential to other applications architecture ranges widely in function,
user-friendly sampling method, eDNA (e.g., population or functional but by far the most common use is
is now also popular in citizen science genetics). Ultimately, technological shelter. Animals can spend a large
and education (Figure 1B). advancements (like Nanopore’s amount of time in their shelters, and
portable real-time sequencer), and the this is often where they both sleep and
What are its limitations? As cool prospect of making eDNA biodiversity rear young, two of the most vulnerable
as it sounds, eDNA is not flawless. data globally accessible, make it a states in animal lives. To optimize
One of its main limitations is the very promising tool for successfully the safety and suitability of refuges
current difficulty in obtaining specific assessing conservation priorities and available to them, many animals have
information beyond the level of biosecurity risk. become architects and create their own
taxonomy, such as age, sex, and size. shelters, ranging from simple holes in
The interpretation of obtained data Where can I find out more? the ground to the large complex nests
also requires a deeper understanding Barnes, M.A., and Turner, C.R. (2016). The ecology of some social insects.
of environmental DNA and implications for
of the ecology of eDNA (where it conservation genetics. Conserv. Genet. 17, Building or modifying a structure to
comes from — origin; it’s physical 1–17. create a refuge, however, requires time
Berry, O., Jarman, S., Bissett, A., Hope, M.,
properties in the environment — state; Paeper, C., Bessey, C., Schwartz, M.K., Hale, and energy, and understanding this
how and where it persists — fate J. and Bunce, M. (2021). Making environmental behaviour in a social and ecological
and how it’s transported) (Figure 1C). DNA (eDNA) biodiversity records globally context is key to understanding
accessible. Environ. DNA 3, 699–705.
Importantly, different practises can Bohmann, K., Evans, A., Gilbert, M.T., Carvalho, the selection pressures that shape
influence eDNA detection, and thus G.R., Creer, S., Knapp, M., Yu, D.W. and de it. Though animal architecture is
Bruyn, M. (2014). Environmental DNA for
laboratory and field protocols often wildlife biology and biodiversity monitoring. taxonomically widespread, reviews of
need to be standardised for different Trends Ecol. Evol. 29, 358–367. animal architecture often focus on birds
species or environments. Likewise, for Cristescu, M.E. and Hebert, P.D.N. (2018). and insects. Few researchers discuss,
Uses and misuses of environmental DNA in
various and quite complicated reasons biodiversity, science and conservation. Annu. let alone parameterize and model,
that would turn this into a slow guide, Rev. Ecol. Evol. Syst. 49, 209–230. the advantages and disadvantages of
Deiner, K., Bik, H.M., Mächler, E., Seymour, M.,
false positives (DNA is recovered Lacoursière-Roussel, A., Altermatt, F., Creer, shelter construction in mammals.
but the species isn’t present) and S., Bista, I., Lodge, D.M., de Vere, N. et al. Bats are the second largest order
false negatives (species are present (2017). Environmental DNA metabarcoding: of mammals with more than 1400
Transforming how we survey animal and plant
but DNA remains undetected) can communities. Mol. Ecol. 26, 5872–5895. species described to date, and exhibit
be introduced into the data during Ruppert, K.M., Kline, R.J., Rahman, M.S. (2019). stunning diversity in ecology, social
Past, present, and future perspectives of
sampling and subsequent analysis. environmental DNA (eDNA) metabarcoding: systems, behaviour, and morphology.
Just to give an example, incomplete A systematic review in methods, monitoring, All bats depend on suitable shelters
DNA reference databases (consisting and applications of global eDNA. Glob. Ecol. or ‘roosts’ as they rest during the day,
Conserv. 17, e00547.
of unique DNA sequences and their Stewart, K.A. (2019). Understanding the effects of and often also between foraging bouts
species identification) can influence biotic and abiotic factors on sources of aquatic at night. Bat shelters have to fulfil
environmental DNA. Biodivers. Conserv. 28,
results enormously. Yet, certain 983–1001. specific microclimate and accessibility
limitations can be overcome during Taberlet, P., Bonin, A., Zinger, L., and Coissac, E. requirements, and their availability both
experimental design and bioinformatic (2018). Environmental DNA: For Biodiversity limits species distribution ranges and
Research and Monitoring (Oxford: Oxford
approaches. University Press). is crucial for successful conservation.
For example, the fact that so many
What is the future of eDNA bats aggregate in just a few suitable
Department of Environmental Biology,
research? It is well known that Institute of Environmental Sciences, Leiden caves has had a dramatic influence
biodiversity is declining worldwide, University, Leiden, Netherlands. on the spread in North America of
and human impacts are altering our *E-mail: e.a.didaskalou@cml.leidenuniv.nl white-nose syndrome, a devastating
R1252 Current Biology 32, R1245–R1261, November 21, 2022 Published by Elsevier Inc.