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0 GENETICS
AREAS OF EXPLORATION
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3.1 GENES
chromosomes.
- A gene is a heritable factor that consists of a length of DNA and influences
a specific characteristic/A gene is a sequence of DNA that encodes for a
specific trait (traits may also be influenced by multiple genes)/Gene, unit
of hereditary information that occupies a fixed position (locus) on a chromosome .
- Genes achieve their effects by directing the synthesis of .The position of
proteins
DNA and RNA also differ in their bases. DNA has four nitrogenous bases: guanine (G), adenine (A), thymine (T) and cytosine (C). RNA has the same bases except for thymine, which is replaced by uracil (U). Bases can be
classified based on the number of rings present in their structure. Purines are bases that have two rings in their structure, while pyrimidines contain only one ring. Thymine, cytosine and uracil are examples of pyrimidines, while
adenine and guanine are classified as purines.
NUCLEOTIDES
called nucleotides. DNA and RNA are composed of three parts, namely a pentose sugar
(meaning that it has five carbon atoms), a phosphate group and a nitrogenous base.
- DNA and RNA also differ in their bases. DNA has four nitrogenous bases: guanine (G),
adenine (A), thymine (T) and cytosine (C). RNA has the same bases except for thymine,
which is replaced by uracil (U).
- Bases can be classified based on the number of rings present in their structure. Purines
are bases that have two rings in their structure, while pyrimidines contain only one ring.
Thymine, cytosine and uracil are examples of pyrimidines, while adenine and guanine are
classified as purines.
STRANDS
STRANDS
(ii) Deletion
(iii) Substitution
(iv) Inversion.
Insertion
- This refers to the addition of an extra base
or bases onto an existing DNA strand.
Mapping – The number, location, size and sequence of human genes is now
established
Screening – This has allowed for the production of specific gene probes to
detect sufferers and carriers of genetic diseases
Medicine – The discovery of new proteins have lead to improved treatments
(pharmacogenetics and rational drug design)
Ancestry – Comparisons with other genomes have provided insight into the
origins, evolution and migratory patterns of man.
Human Genome Project
-
Human genome project
The completion of the Human Genome Project in 2003 lead to many outcomes:
Mapping – The number, location, size and sequence of human genes is now
established
Screening – This has allowed for the production of specific gene probes to
detect sufferers and carriers of genetic diseases
Medicine – The discovery of new proteins have lead to improved treatments
(pharmacogenetics and rational drug design)
Ancestry – Comparisons with other genomes have provided insight into the
origins, evolution and migratory patterns of man.
Genome Project
Organism Estimated number of genes Number of Chromosomes
genetic information
Caenorhabditis elegans (roundworm)
of an organism.
19 000 12
Caenorhabditis elegans (roundworm) 19 000
-
Saccharomyces cerevisiae (yeast) 6000 32
genetic information of an
Drosophila melanogaster (fruit fly) organism.
130 × 10 6
(iii) Haemophilia
- The gene involved is a stretch of DNA on chromosome 11 called . It codes forHBB
the beta subunit of haemoglobin, a polypeptide 146 amino acids long. The
standard Hb allele reads G A G at the 6th triplet of the
A
. The Hb allele reads
sense DNA strand
S
Chromosomes
- Sickled cells must be broken down and eliminated from the body, which strains the liver and causes a
shortage of functioning red blood cells (anaemia).
- New red blood cells must be made in the bone marrow to replace the cells lost, and the extra work
can damage bone structure. One-nucleotide change in the DNA can cause so many effects. When one
gene has multiple effects, it is called pleiotropy .
- Sickling events are triggered by low levels of oxygen in the blood, dehydration, infection, and
exposure to sudden temperature changes. A careful lifestyle and medicines can help greatly. Without
treatment, most children with sickle cell anaemia will die in infancy.
- The new shape of the sickled red blood cells causes a lot of problems. They can get stuck and clog
blood vessels anywhere in the body, causing intense pain as blood supply fails. If this happens in the
brain, the person could have a stroke.
Chromosomes
- Sickled cells must be broken down and eliminated from the body, which strains the liver and causes a
shortage of functioning red blood cells (anaemia).
- New red blood cells must be made in the bone marrow to replace the cells lost, and the extra work
can damage bone structure. One-nucleotide change in the DNA can cause so many effects. When one
gene has multiple effects, it is called pleiotropy .
- Sickling events are triggered by low levels of oxygen in the blood, dehydration, infection, and
exposure to sudden temperature changes. A careful lifestyle and medicines can help greatly. Without
treatment, most children with sickle cell anaemia will die in infancy.
Prokaryotic Chromosomes
- Chromosomes are made of DNA molecules and carry the genetic code for each organism but
prokaryotic and eukaryotic chromosomes are different in their structure.
- Prokaryotes contain a circle of DNA that is often concentrated in one area of the cell, whereas
eukaryotes have linear DNA that is associated with histone proteins.
- Some of these proteins are structural and others regulate the activities of the DNA.
- Prokaryotes have additional genetic material in the form of small circular structures known as
plasmids.
- Prokaryotes are much simpler organisms and so require fewer genes to maintain themselves.
Prokaryotic Chromosomes
- Chromosomes are made of DNA molecules and carry the genetic code for each organism but
prokaryotic and eukaryotic chromosomes are different in their structure.
- Prokaryotes contain a circle of DNA that is often concentrated in one area of the cell, whereas
eukaryotes have linear DNA that is associated with histone proteins.
- Some of these proteins are structural and others regulate the activities of the DNA.
- Prokaryotes have additional genetic material in the form of small circular structures known as
plasmids.
- Prokaryotes are much simpler organisms and so require fewer genes to maintain themselves.
Prokaryotic Chromosomes
- Chromosomes are made of DNA molecules and carry the genetic code for each
organism but prokaryotic and eukaryotic chromosomes are different in their structure.
- Prokaryotes contain a circle of DNA that is often concentrated in one area of the cell,
whereas eukaryotes have linear DNA that is associated with histone proteins.
- Some of these proteins are structural and others regulate the activities of the DNA.
- Prokaryotes have additional genetic material in the form of small circular structures
known as plasmids.
Prokaryotic Chromosomes
-Chromosomes The single, circular prokaryotic chromosome is referred to as 'naked'
because it is not associated with any proteins.
- Plasmids are much smaller circular DNA molecules that are easily exchanged between
prokaryotes and may contain several genes.
- Prokaryotes are much simpler organisms and so require fewer genes to maintain
themselves.
Eukaryotic Chromosome
- Eukaryotic species have two or more chromosome types.
- Their chromosomes form pairs, which are known as homologues.
- Homologous pairs are about the same length and carry the same sequence of
genes at the same locations along their length.
- The form of the genes (alleles) on each of the pair are not necessarily the same
because, in sexually reproducing organisms, one chromosome will have been
inherited from each of the two parents. So a gene that determines flower colour in
a plant would be at the same location on each chromosome in a homologous pair
but the allele on the maternal chromosome might not be the same as that on the
paternal chromosome.
Eukaryotic Chromosome
Karyotyping
- Sickled cells must be broken down and eliminated from the body, which strains the liver and causes a
shortage of functioning red blood cells (anaemia).
- New red blood cells must be made in the bone marrow to replace the cells lost, and the extra work
can damage bone structure. One-nucleotide change in the DNA can cause so many effects. When one
gene has multiple effects, it is called pleiotropy .
- Sickling events are triggered by low levels of oxygen in the blood, dehydration, infection, and
exposure to sudden temperature changes. A careful lifestyle and medicines can help greatly. Without
treatment, most children with sickle cell anaemia will die in infancy.
Karyotyping
- The new shape of the sickled red blood cells causes a lot of problems. They can get stuck and clog
blood vessels anywhere in the body, causing intense pain as blood supply fails. If this happens in the
brain, the person could have a stroke.
- Sickled cells must be broken down and eliminated from the body, which strains the liver and causes a
shortage of functioning red blood cells (anaemia).
- New red blood cells must be made in the bone marrow to replace the cells lost, and the extra work
can damage bone structure. One-nucleotide change in the DNA can cause so many effects. When one
gene has multiple effects, it is called pleiotropy .
- Sickling events are triggered by low levels of oxygen in the blood, dehydration, infection, and
exposure to sudden temperature changes. A careful lifestyle and medicines can help greatly. Without
treatment, most children with sickle cell anaemia will die in infancy.
Karyotyping
Karyotyping is a test to examine chromosomes in a sample of
cells. This test can help identify genetic problems as the cause of a
disorder or disease.
-A karyogram shows the chromosomes of an organism in
homologous pairs of decreasing length.
-Karyotyping can diagnose only large-scale chromosomal
differences. Conditions caused by differences in one or a few genes
would be invisible at the level of the chromosome.
Non-disjunction
Karyotyping is a test to examine chromosomes in a sample of
cells. This test can help identify genetic problems as the cause of a
disorder or disease.
-A karyogram shows the chromosomes of an organism in
homologous pairs of decreasing length.
-Karyotyping can diagnose only large-scale chromosomal
differences. Conditions caused by differences in one or a few genes
would be invisible at the level of the chromosome.
Non-disjunction
Karyotyping is a test to examine chromosomes in a sample of
cells. This test can help identify genetic problems as the cause of a
disorder or disease.
-A karyogram shows the chromosomes of an organism in
homologous pairs of decreasing length.
-Karyotyping can diagnose only large-scale chromosomal
differences. Conditions caused by differences in one or a few genes
would be invisible at the level of the chromosome.
Non-disjunction
Karyotyping is a test to examine chromosomes in a sample of
cells. This test can help identify genetic problems as the cause of a
disorder or disease.
-A karyogram shows the chromosomes of an organism in
homologous pairs of decreasing length.
-Karyotyping can diagnose only large-scale chromosomal
differences. Conditions caused by differences in one or a few genes
would be invisible at the level of the chromosome.
Non-disjunction
Non-disjunction is a failure of homologous pairs of chromosomes or sister
chromatids to separate properly during meiosis.
- Non-disjunction can occur at anaphase I or anaphase II.
- Non-disjunction can also occur during anaphase of mitosis, though this usually
impacts too few cells to be noticed.
- It results in gametes that contain either one too few or one too many
chromosomes. Those with too few seldom survive, but in some cases a gamete
with an extra chromosome does survive and after fertilisation produces a zygote
with three chromosomes of one type. This is called a trisomy.
Non-disjunction
Non-disjunction can occur at any of the 23 chromosome pairs, resulting in a
gamete with an extra or missing copy of that chromosome.
Down syndrome, which involves chromosome 21 specifically, is well known
because the symptoms are relatively mild. Many trisomies cause symptoms so
severe that the embryo will not develop.
Monosomy, having one chromosome of a homologous pair, can also occur. In
humans there is only one survivable monosomy; having a single X chromosome for
the sex chromosome pair.
- Non-disjunction is a frequent occurrence, but the majority of these gametes do
not mature or take part in fertilisation.
Human defects due to non-disjunction
-Risks to the fetus include infection, fetal trauma from the needle, and
miscarriage. The risk of miscarriage is between 0.1 and 1.0%, and varies by
practitioner.
Chorionic villus sampling (CVS)
- Amniocentesis is usually performed between weeks 14 and 20 of pregnancy.
-Risks to the fetus include infection, fetal trauma from the needle, and
miscarriage. The risk of miscarriage is between 0.1 and 1.0%, and varies by
practitioner.
Chorionic villus sampling (CVS)
- Amniocentesis is usually performed between weeks 14 and 20 of pregnancy.
-Risks to the fetus include infection, fetal trauma from the needle, and
miscarriage. The risk of miscarriage is between 0.1 and 1.0%, and varies by
practitioner.
Chorionic villus sampling (CVS)
- Amniocentesis is usually performed between weeks 14 and 20 of pregnancy.
-Risks to the fetus include infection, fetal trauma from the needle, and
miscarriage. The risk of miscarriage is between 0.1 and 1.0%, and varies by
practitioner.
Chorionic villus sampling (CVS)
-This is done during weeks 10–13.
- As in amniocentesis, ultrasound imaging is used to guide the medical professional
during the sampling and avoid harm to the developing embryo or foetus.
Foetal cells are sampled by inserting a suctioning tool (often a catheter or syringe)
through the vagina or abdomen to reach the foetal cells in the chorion.
- The chorion is a membrane that surrounds the fetus and develops into part of the
placenta.
- The risks associated with CVS include bleeding, infection and miscarriage. The
risk of miscarriage is 0.5–2.0%, somewhat higher than with amniocentesis.
Foetal karyotyping: methods and risks
- This is when an individual lacks one sex chromosome
(XO or YO).
- They only have 45 chromosomes as a result.
- The YO zygotes do not develop due to absence of many
vital genes often located on the X chromosome.
-XO females show underdeveloped female characteristics:
infertile, no breast development and are short in stature.
INHERITANCE
- The new shape of the sickled red blood cells causes a lot of problems. They can get stuck and clog
blood vessels anywhere in the body, causing intense pain as blood supply fails. If this happens in the
brain, the person could have a stroke.
- Sickled cells must be broken down and eliminated from the body, which strains the liver and causes a
shortage of functioning red blood cells (anaemia).
- New red blood cells must be made in the bone marrow to replace the cells lost, and the extra work
can damage bone structure. One-nucleotide change in the DNA can cause so many effects. When one
gene has multiple effects, it is called pleiotropy .
- Sickling events are triggered by low levels of oxygen in the blood, dehydration, infection, and
exposure to sudden temperature changes. A careful lifestyle and medicines can help greatly. Without
treatment, most children with sickle cell anaemia will die in infancy.
Learning Areas
The fundamental laws of inheritance proposed by Mendel;
The use of Punnett grids and other tools to predict the
genotypic and phenotypic ratios of offspring;
The laws of probability and comparison of observed and
expected results in genetic crosses;
The patterns of inheritance shown by alleles, including
dominant, recessive, co-dominant, and sex-linked;
Essential idea: The inheritance of genes follows patterns.
Learning Areas
Human conditions that follow each of the above patterns, including Huntington’s
disease, cystic fibrosis, sickle cell anemia, the ABO blood group, haemophilia,
and red–green colour blindness;
The use of pedigree charts to deduce the pattern of inheritance for a genetic trait;
The increase in mutation rate and cancer caused by radiation and mutagenic
chemicals, and
The consequences of radiation following the bombing of Hiroshima in 1946 and
the accident at Chernobyl in 1986.
Locus: the specific position of a gene on a homologous chromosome; a gene locus is fixed
for a species – for example, the insulin gene is always found at the same position on
chromosome 11 in humans.
Homozygous: having two identical alleles at a gene locus; the alleles may both be dominant
or both recessive – for example, TT or tt
Heterozygous: having two different alleles at a gene locus – for example, Tt.
Key terms
Test cross: testing a dominant phenotype to determine if it is heterozygous
or homozygous – for example, crossing either TT or Tt with tt; if there are
any offspring with the recessive phenotype, then the parent with the
dominant phenotype must be heterozygous (Tt) Carrier an individual with
one copy of a recessive allele that causes a genetic disease in individuals
that are homozygous for this allele
Pure-breeding: individuals of the same phenotype that, when crossed with
each other, produce offspring which also all have that same phenotype.
Basics of
Mendelian
Human conditions that follow each of the above patterns, including Huntington’s
genetics (1822-
disease, cystic fibrosis, sickle cell anemia, the ABO blood group, haemophilia,
1884)
and red–green colour blindness;
The use of pedigree charts to deduce the pattern of inheritance for a genetic trait;
The increase in mutation rate and cancer caused by radiation and mutagenic
chemicals, and
The consequences of radiation following the bombing of Hiroshima in 1946 and
the accident at Chernobyl in 1986.
mother.)
2. The law of independent assortment
-The allele inherited for one trait does not affect which
allele will be inherited for any other trait.
- A gamete contains one copy of each gene; which copy it
receives during meiosis is the result of random orientation
of homologous chromosomes during metaphase I. ( There
is an exception for genes whose loci are close together on
the same chromosome. These are called linked genes.)
3. The law of dominance:
-In an organism with two different alleles, one allele
will determine the trait. The allele that determines
the trait is dominant; the unexpressed allele is
recessive. (There are exceptions for patterns of
inheritance other than dominant–recessive, e.g. co-
dominance.)
-In an organism with two different alleles, one allele
Patterns ofThe
will determine the trait. inheritance
allele that determines
the trait is dominant;and
the unexpressed allele is
recessive. (There are exceptions for patterns of
Punnett grids
inheritance other than dominant–recessive, e.g. co-
dominance.)
Punnett grids/Punnet squares
Punnett grids/Punnett squares, these are diagrams used to determine the expected
ratio of genotypes and phenotypes in the offspring of parents with known genotypes.
The possible alleles found in the egg are shown along an outside edge of the grid,
and the alleles possible in the sperm are shown along an adjacent edge.
The internal boxes show the allele combinations that can be produced by fusion of
the gametes. They represent the genotypes that could be found in the offspring.
Monohybrid Inheritance
Punnett grids/Punnett squares, these are diagrams used to determine the expected
ratio of genotypes and phenotypes in the offspring of parents with known genotypes.
The possible alleles found in the egg are shown along an outside edge of the grid,
and the alleles possible in the sperm are shown along an adjacent edge.
The internal boxes show the allele combinations that can be produced by fusion of
the gametes. They represent the genotypes that could be found in the offspring.
Inheritance of Co-dominance
Punnett grids/Punnett squares, these are diagrams used to determine the expected
ratio of genotypes and phenotypes in the offspring of parents with known genotypes.
The possible alleles found in the egg are shown along an outside edge of the grid,
and the alleles possible in the sperm are shown along an adjacent edge.
The internal boxes show the allele combinations that can be produced by fusion of
the gametes. They represent the genotypes that could be found in the offspring.
Inheritance of Co-dominance
Punnett grids/Punnett squares, these are diagrams used to determine the expected
ratio of genotypes and phenotypes in the offspring of parents with known genotypes.
The possible alleles found in the egg are shown along an outside edge of the grid,
and the alleles possible in the sperm are shown along an adjacent edge.
The internal boxes show the allele combinations that can be produced by fusion of
the gametes. They represent the genotypes that could be found in the offspring.
Inheritance of Co-dominance
Punnett grids/Punnett squares, these are diagrams used to determine the expected
ratio of genotypes and phenotypes in the offspring of parents with known genotypes.
The possible alleles found in the egg are shown along an outside edge of the grid,
and the alleles possible in the sperm are shown along an adjacent edge.
The internal boxes show the allele combinations that can be produced by fusion of
the gametes. They represent the genotypes that could be found in the offspring.
Inheritance of ABO blood groups
Punnett grids/Punnett squares, these are diagrams used to determine the expected
ratio of genotypes and phenotypes in the offspring of parents with known genotypes.
The possible alleles found in the egg are shown along an outside edge of the grid,
and the alleles possible in the sperm are shown along an adjacent edge.
The internal boxes show the allele combinations that can be produced by fusion of
the gametes. They represent the genotypes that could be found in the offspring.
Genetic disorders: sex-linked traits
Punnett grids/Punnett squares, these are diagrams used to determine the expected
ratio of genotypes and phenotypes in the offspring of parents with known genotypes.
The possible alleles found in the egg are shown along an outside edge of the grid,
and the alleles possible in the sperm are shown along an adjacent edge.
The internal boxes show the allele combinations that can be produced by fusion of
the gametes. They represent the genotypes that could be found in the offspring.
Red green colour blindness
olour blindness
Punnett grids/Punnett squares, these are diagrams used to determine the expected
ratio of genotypes and phenotypes in the offspring of parents with known genotypes.
The possible alleles found in the egg are shown along an outside edge of the grid,
and the alleles possible in the sperm are shown along an adjacent edge.
The internal boxes show the allele combinations that can be produced by fusion of
the gametes. They represent the genotypes that could be found in the offspring.
Cystic fibrosis
Punnett grids/Punnett squares, these are diagrams used to determine the expected
ratio of genotypes and phenotypes in the offspring of parents with known genotypes.
and
- The simplest use of a Punnett grid is a monohybrid cross, where only one
characteristic is investigated.
Huntington's
The possible alleles found in the egg are shown along an outside edge of the grid,
and the alleles possible in the sperm are shown along an adjacent edge.
disease
The internal boxes show the allele combinations that can be produced by fusion of
the gametes. They represent the genotypes that could be found in the offspring.
- Punnett grids/squares are set up in the following way:
The possible alleles found in the egg are shown along an outside edge of
Cystic fibrosis
the grid, and the alleles possible in the sperm are shown along an adjacent
edge.
The internal boxes show the allele combinations that can be produced by
fusion of the gametes. They represent the genotypes that could be found in
the offspring.
Cystic fibrosis
- Punnett grids/squares are set up in the following way:
The possible alleles found in the egg are shown along an outside edge of
the grid, and the alleles possible in the sperm are shown along an adjacent
edge.
The internal boxes show the allele combinations that can be produced by
fusion of the gametes. They represent the genotypes that could be found in
the offspring.
Cystic fibrosis
- Punnett grids/squares are set up in the following way:
The possible alleles found in the egg are shown along an outside edge of
the grid, and the alleles possible in the sperm are shown along an adjacent
edge.
The internal boxes show the allele combinations that can be produced by
fusion of the gametes. They represent the genotypes that could be found in
the offspring.
- Punnett grids/squares are set up in the following way:
The possible alleles found in the egg are shown along an outside edge of
Huntington's disease
the grid, and the alleles possible in the sperm are shown along an adjacent
edge.
The internal boxes show the allele combinations that can be produced by
fusion of the gametes. They represent the genotypes that could be found in
the offspring.
Huntington's disease
- Punnett grids/squares are set up in the following way:
The possible alleles found in the egg are shown along an outside edge of
the grid, and the alleles possible in the sperm are shown along an adjacent
edge.
The internal boxes show the allele combinations that can be produced by
fusion of the gametes. They represent the genotypes that could be found in
the offspring.
Huntington's disease
- Punnett grids/squares are set up in the following way:
The possible alleles found in the egg are shown along an outside edge of
the grid, and the alleles possible in the sperm are shown along an adjacent
edge.
The internal boxes show the allele combinations that can be produced by
fusion of the gametes. They represent the genotypes that could be found in
the offspring.
Huntington's disease
- Punnett grids/squares are set up in the following way:
The possible alleles found in the egg are shown along an outside edge of
the grid, and the alleles possible in the sperm are shown along an adjacent
edge.
The internal boxes show the allele combinations that can be produced by
fusion of the gametes. They represent the genotypes that could be found in
the offspring.
Reading Assignment
modification and
characteristic is investigated.
biotechnology
The possible alleles found in the egg are shown along an outside edge of the grid,
and the alleles possible in the sperm are shown along an adjacent edge.
The internal boxes show the allele combinations that can be produced by fusion of
the gametes. They represent the genotypes that could be found in the offspring.
Group Presentations
Group 1: Gel Electrophoresis and Polymerase Chain Reaction
Group 1: Mubea,
(PCR)
Miriam and Derian.
Group 2: DNA Profiling and Genetic modification: gene transfer Group 2: Linzy, Joel
Group 3: Assessment of the risks of the genetic modification of and Grace.
crops Group 3: Marion,
Group 4: Clones Zenna and Raphael.
Group 5: Data analysis: the effect of Bt crops on the monarch Group 4: Fridah,
butterfly and Factors affecting rooting of stem-cuttings Idris and Valary.
Group 5: Christine,
Essential idea: Biologists have developed techniques for artificial
Faith and Joachim.
manipulation of DNA, cells and organisms.