PMID- 16754323

OWN - NLM
STAT- MEDLINE
DCOM- 20060907
LR - 20101118
IS - 1521-6543 (Print)
IS - 1521-6543 (Linking)
VI - 58
IP - 5-6
DP - 2006 May-Jun
TI - Evolution without divergence.
PG - 309-11
FAU - Tamiya, Nobuo
AU - Tamiya N
AD - Tohoku University, Tokyo, Japan. ntam@h5.dion.ne.jp
FAU - Yagi, Tatsuhiko
AU - Yagi T
LA - eng
PT - Journal Article
PT - Review
PL - England
TA - IUBMB Life
JT - IUBMB life
JID - 100888706
SB - IM
MH - Animals
MH - *Biological Evolution
MH - Evolution, Molecular
MH - Gene Transfer, Horizontal
MH - Humans
MH - Phylogeny
RF - 35
EDAT- 2006/06/07 09:00
MHDA- 2006/09/08 09:00
CRDT- 2006/06/07 09:00
PHST- 2006/06/07 09:00 [pubmed]
PHST- 2006/09/08 09:00 [medline]
PHST- 2006/06/07 09:00 [entrez]
AID - R7N22643Q6984643 [pii]
AID - 10.1080/15216540600719648 [doi]
PST - ppublish
SO - IUBMB Life. 2006 May-Jun;58(5-6):309-11. doi: 10.1080/15216540600719648.

PMID- 35834945
OWN - NLM
STAT- MEDLINE
DCOM- 20220922
LR - 20221018
IS - 1879-0380 (Electronic)
IS - 0959-437X (Print)
IS - 0959-437X (Linking)
VI - 76
DP - 2022 Oct
TI - Recent insights into the evolution of mutation rates in yeast.
PG - 101953
LID - S0959-437X(22)00062-4 [pii]
LID - 10.1016/j.gde.2022.101953 [doi]
AB - Mutation is the origin of all genetic variation, good and bad. The mutation
process can evolve in response to mutations, positive or negative selection,
and
genetic drift, but how these forces contribute to mutation-rate variation is
an
unsolved problem at the heart of genetics research. Mutations can be
challenging
to measure, but genome sequencing and other tools have allowed for the
collection
of larger and more detailed datasets, particularly in the yeast-model system.
We
review key hypotheses for the evolution of mutation rates and describe recent
advances in understanding variation in mutational properties within and among
yeast species. The multidimensional spectrum of mutations is increasingly
recognized as holding valuable clues about how this important process
evolves.
CI - Copyright © 2022 Elsevier Ltd. All rights reserved.
FAU - Melde, Robert H
AU - Melde RH
AD - Department of Genetics, University of Wisconsin-Madison, USA. Electronic
address:
rmelde@wisc.edu.
FAU - Bao, Kevin
AU - Bao K
AD - Department of Genetics, University of Wisconsin-Madison, USA.
FAU - Sharp, Nathaniel P
AU - Sharp NP
AD - Department of Genetics, University of Wisconsin-Madison, USA. Electronic
address:
https://twitter.com/@sharpnath.
LA - eng
GR - T32 GM007133/GM/NIGMS NIH HHS/United States
PT - Journal Article
PT - Review
DEP - 20220711
PL - England
TA - Curr Opin Genet Dev
JT - Current opinion in genetics & development
JID - 9111375
SB - IM
MH - Biological Evolution
MH - Evolution, Molecular
MH - *Genetic Drift
MH - Mutation
MH - *Mutation Rate
MH - Selection, Genetic
PMC - PMC9491374
MID - NIHMS1836934
EDAT- 2022/07/15 06:00
MHDA- 2022/09/23 06:00
PMCR- 2023/10/01
CRDT- 2022/07/14 18:23
PHST- 2022/04/24 00:00 [received]
PHST- 2022/05/25 00:00 [revised]
PHST- 2022/06/13 00:00 [accepted]
PHST- 2023/10/01 00:00 [pmc-release]
PHST- 2022/07/15 06:00 [pubmed]
PHST- 2022/09/23 06:00 [medline]
PHST- 2022/07/14 18:23 [entrez]
AID - S0959-437X(22)00062-4 [pii]
AID - 10.1016/j.gde.2022.101953 [doi]
PST - ppublish
SO - Curr Opin Genet Dev. 2022 Oct;76:101953. doi: 10.1016/j.gde.2022.101953. Epub
2022 Jul 11.

PMID- 19178980
OWN - NLM
STAT- MEDLINE
DCOM- 20090617
LR - 20110503
IS - 0169-5347 (Print)
IS - 0169-5347 (Linking)
VI - 24
IP - 3
DP - 2009 Mar
TI - Stochasticity in evolution.
PG - 157-65
LID - 10.1016/j.tree.2008.09.014 [doi]
AB - The debate over the role of stochasticity is central in evolutionary biology,
often summarised by whether or not evolution is predictable or repeatable.
Here
we distinguish three types of stochasticity: stochasticity of mutation and
variation, of individual life histories and of environmental change. We then
explain when stochasticity matters in evolution, distinguishing four broad
situations: stochasticity contributes to maladaptation or limits adaptation;
it
drives evolution on flat fitness landscapes (evolutionary freedom); it might
promote jumps from one fitness peak to another (evolutionary revolutions);
and it
might shape the selection pressures themselves. We show that stochasticity,
by
directly steering evolution, has become an essential ingredient of
evolutionary
theory beyond the classical Wright-Fisher or neutralist-selectionist debates.
FAU - Lenormand, Thomas
AU - Lenormand T
AD - Centre d'Ecologie Fonctionnelle et Evolutive, UMR 5175, 1919 Route de Mende,
Montpellier cedex 5, France. thomas.lenormand@cefe.cnrs.fr
FAU - Roze, Denis
AU - Roze D
FAU - Rousset, François
AU - Rousset F
LA - eng
PT - Journal Article
PT - Review
DEP - 20090127
PL - England
TA - Trends Ecol Evol
JT - Trends in ecology & evolution
JID - 8805125
SB - IM
MH - Adaptation, Biological
MH - *Biological Evolution
MH - Environment
MH - Genetic Drift
MH - Genetic Variation
MH - Mutation
MH - Population Dynamics
MH - Selection, Genetic
MH - Stochastic Processes
MH - Thermodynamics
RF - 138
EDAT- 2009/01/31 09:00
MHDA- 2009/06/18 09:00
CRDT- 2009/01/31 09:00
PHST- 2008/04/08 00:00 [received]
PHST- 2008/09/24 00:00 [revised]
PHST- 2008/09/25 00:00 [accepted]
PHST- 2009/01/31 09:00 [entrez]
PHST- 2009/01/31 09:00 [pubmed]
PHST- 2009/06/18 09:00 [medline]
AID - S0169-5347(09)00017-2 [pii]
AID - 10.1016/j.tree.2008.09.014 [doi]
PST - ppublish
SO - Trends Ecol Evol. 2009 Mar;24(3):157-65. doi: 10.1016/j.tree.2008.09.014.
Epub
2009 Jan 27.

PMID- 36328872
OWN - NLM
STAT- MEDLINE
DCOM- 20230222
LR - 20230408
IS - 1878-4372 (Electronic)
IS - 1360-1385 (Linking)
VI - 28
IP - 3
DP - 2023 Mar
TI - The origin and early evolution of plants.
PG - 312-329
LID - S1360-1385(22)00271-0 [pii]
LID - 10.1016/j.tplants.2022.09.009 [doi]
AB - Plant (archaeplastid) evolution has transformed the biosphere, but we are
only
now beginning to learn how this took place through comparative genomics,
phylogenetics, and the fossil record. This has illuminated the phylogeny of
Archaeplastida, Viridiplantae, and Streptophyta, and has resolved the
evolution
of key characters, genes, and genomes - revealing that many key innovations
evolved long before the clades with which they have been casually associated.
Molecular clock analyses estimate that Streptophyta and Viridiplantae emerged
in
the late Mesoproterozoic to late Neoproterozoic, whereas Archaeplastida
emerged
in the late-mid Palaeoproterozoic. Together, these insights inform on the
coevolution of plants and the Earth system that transformed ecology and
global
biogeochemical cycles, increased weathering, and precipitated snowball Earth
events, during which they would have been key to oxygen production and net
primary productivity (NPP).
CI - Copyright © 2022 The Author(s). Published by Elsevier Ltd.. All rights
reserved.
FAU - Bowles, Alexander M C
AU - Bowles AMC
AD - School of Geographical Sciences, University of Bristol, University Road,
Bristol
BS8 1SS, UK; Bristol Palaeobiology Group, School of Biological Sciences and
School of Earth Sciences, Life Sciences Building, University of Bristol,
Bristol
 BS8 1TQ, UK. Electronic address: zl20161@bristol.ac.uk.
FAU - Williamson, Christopher J
AU - Williamson CJ
AD - School of Geographical Sciences, University of Bristol, University Road,
Bristol
BS8 1SS, UK.
FAU - Williams, Tom A
AU - Williams TA
AD - Bristol Palaeobiology Group, School of Biological Sciences and School of
Earth
Sciences, Life Sciences Building, University of Bristol, Bristol BS8 1TQ, UK.
FAU - Lenton, Timothy M
AU - Lenton TM
AD - Global Systems Institute, University of Exeter, Laver Building, North Park
Road,
Exeter EX4 4QE, UK.
FAU - Donoghue, Philip C J
AU - Donoghue PCJ
AD - Bristol Palaeobiology Group, School of Biological Sciences and School of
Earth
Sciences, Life Sciences Building, University of Bristol, Bristol BS8 1TQ, UK.
Electronic address: phil.donoghue@bristol.ac.uk.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
PT - Review
DEP - 20221031
PL - England
TA - Trends Plant Sci
JT - Trends in plant science
JID - 9890299
SB - IM
MH - *Biological Evolution
MH - *Plants/genetics
MH - Phylogeny
MH - Ecology
MH - Genomics
MH - Evolution, Molecular
OTO - NOTNLM
OT - Archaeplastida
OT - Streptophyta
OT - Viridiplantae
OT - plant evolution
COIS- Declaration of interests No interests are declared.
EDAT- 2022/11/04 06:00
MHDA- 2023/02/22 06:00
CRDT- 2022/11/03 23:05
PHST- 2022/05/30 00:00 [received]
PHST- 2022/09/23 00:00 [revised]
PHST- 2022/09/30 00:00 [accepted]
PHST- 2022/11/04 06:00 [pubmed]
PHST- 2023/02/22 06:00 [medline]
PHST- 2022/11/03 23:05 [entrez]
AID - S1360-1385(22)00271-0 [pii]
AID - 10.1016/j.tplants.2022.09.009 [doi]
PST - ppublish
SO - Trends Plant Sci. 2023 Mar;28(3):312-329. doi: 10.1016/j.tplants.2022.09.009.
Epub 2022 Oct 31.
PMID- 36167907
OWN - NLM
STAT- MEDLINE
DCOM- 20221019
LR - 20221101
IS - 1471-0064 (Electronic)
IS - 1471-0056 (Linking)
VI - 23
IP - 11
DP - 2022 Nov
TI - Mapping vertebrate brain evolution.
PG - 647
LID - 10.1038/s41576-022-00535-z [doi]
FAU - Minton, Kirsty
AU - Minton K
AD - Nature Reviews Genetics, . nrg@nature.com.
LA - eng
PT - Comment
PT - Journal Article
PL - England
TA - Nat Rev Genet
JT - Nature reviews. Genetics
JID - 100962779
SB - IM
CON - Science. 2022 Sep 2;377(6610):eabp9444. PMID: 36048929
CON - Science. 2022 Sep 2;377(6610):eabp8202. PMID: 36048944
CON - Science. 2022 Sep 2;377(6610):eabp9262. PMID: 36048956
CON - Science. 2022 Sep 2;377(6610):eabp9186. PMID: 36048957
MH - Animals
MH - Biological Evolution
MH - *Brain
MH - Evolution, Molecular
MH - Phylogeny
MH - *Vertebrates/genetics
EDAT- 2022/09/29 06:00
MHDA- 2022/10/20 06:00
CRDT- 2022/09/28 00:01
PHST- 2022/09/29 06:00 [pubmed]
PHST- 2022/10/20 06:00 [medline]
PHST- 2022/09/28 00:01 [entrez]
AID - 10.1038/s41576-022-00535-z [pii]
AID - 10.1038/s41576-022-00535-z [doi]
PST - ppublish
SO - Nat Rev Genet. 2022 Nov;23(11):647. doi: 10.1038/s41576-022-00535-z.