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RESEARCH

HORIZONS In this issue

SPOTLIGHT
ON DARWIN
plus news and views
from across the
University

University of Cambridge research magazine


www.research-horizons.cam.ac.uk

Issue 9 | Summer 2009


EDITORIAL

THE SYNDICS OF CAMBRIDGE UNIVERSITY LIBRARY

TROPICAL BIOLOGY ASSOCIATION


Welcome to the
summer issue of
Research Horizons, in
which we join the
celebrations* of
Charles Darwin’s birth
200 years ago and
the publication of his
work On the Origin of Species 150 years
ago.
Cambridge is home to a treasure-
trove of Darwin’s artefacts and
documents. The world’s largest
collections of his plant, animal
and geological specimens, his
correspondence and manuscripts, Mr Darwin’s postbag Cambridge Conservation
notes and experiment books can be Initiative
found in our libraries and museums.
As a result, the University has become
a focal point for research on the
pioneering Victorian naturalist. His Contents
theories of evolution, natural selection
and the origin of species lie at the heart Research News 3–7
of many research areas today – whether Recent stories from across the University
it’s the pattern of butterfly wings,
biological complexity, human origins, Spotlight On Darwin 8–19
viral evolution or optimising Mr Darwin’s postbag 8
engineering design. This issue brings On the wings of a butterfly 10
you a flavour of this research at In Darwin’s footsteps: the geology of the Galapagos 12
Cambridge: the remarkable stories Displaying the foundations of evolutionary thinking 13
surrounding Darwin’s artefacts, and the
Leverhulme Centre for Human Evolutionary Studies 14
new dimension Darwin’s theories have
Design optimisation by evolution 15
brought to understanding the world
we live in. What Darwin didn’t know: viruses and evolution 16
Research Horizons has its own new Stirring tails of evolution 18
dimension this issue in the shape of
knowledge transfer (KT). At the core of Preview 20–21
this catch-all term is the mutually Rethinking eccentricity
beneficial exchange of knowledge
between academia, business and the Knowledge Transfer 22
public sector. A great many examples What is knowledge transfer?
of KT activities happen across the
University and we’ll be covering these in Features 23–31
subsequent issues; we set the scene this
Glaucoma: the silent thief of sight 23
time with an article that draws together
Cambridge Conservation Initiative: transforming international 24
the different forms KT can take, and how
these are supported in Cambridge.
biodiversity conservation
The life-sized bronze statue featured Drying without dying 26
on our front cover was unveiled at From beyond the grave 28
Christ’s College on the bicentenary of Tales of Vikings and Irish, clerics and kings 29
Darwin’s birth by Chancellor of the Unclouding uncertainty in climate modelling 30
University HRH Prince Philip, Duke of
Edinburgh. Sculpted by Anthony Smith, In Focus: Cancer Research UK 32–33
who (like Darwin) was a student at
Christ’s, the statue captures Darwin, Inside Out: Professor David MacKay 34
aged 22, in the final year of his
undergraduate study in Cambridge, six Forthcoming Events 35
months before embarking on the HMS
Beagle voyage that set him on the path
to the theory of evolution.
The Back Page 36
Your way into Cambridge

Dr Louise Walsh, Editor Cover photograph of Christ’s College’s bronze sculpture of Charles Darwin, created by Anthony
research.horizons@rsd.cam.ac.uk Smith (Photographer: Anthony Smith).
Edited by Louise Walsh.
Designed by Cambridge Design Studio (www.cambridgedesignstudio.org).
*See page 35 for the Darwin 2009 Printed by Falcon Printing Services Ltd (www.falcon-printing.co.uk).
Festival and other Darwin-related events. ©2009 University of Cambridge and Contributors as identified. All rights reserved.

2 | Issue 9 | Summer 2009


RESEARCH NEWS

Supercharged rice: the answer to Cambridge


famine? confirmed as
An ambitious project that aims to increase rice yields could
provide the solution to future food shortages. global leader in
health science
RAYMOND PANALIGAN/INTERNATIONAL RICE RESEARCH INSTITUTE

A partnership that includes


the University and its three
principal NHS Trust Partners
has been named a top-flight
Academic Health Science
Centre.
The UK’s Department of Health has
designated Cambridge University
Health Partners as one of five Academic
Health Science Centres (AHSCs) from
among the leading university medical
centres in the country. AHSC status
recognises partnerships between
world-class universities and leading
NHS organisations that have the
potential to compete globally and to
speed up the process of taking research
breakthroughs into NHS patient care.
The organisations that make up
Cambridge University Health Partners
are the University of Cambridge,
Cambridge University Hospitals NHS
Foundation Trust, Cambridgeshire and
Peterborough NHS Foundation Trust,
and Papworth Hospital NHS Foundation
A worldwide consortium of experts that three-carbon compound, can produce Trust.
includes Dr Julian Hibberd in Cambridge higher yields. The goal of the Consortium In forming a formal alliance, the four
University’s Department of Plant is to convert rice from a C3 to a C4 pathway. organisations will be brought closer
Sciences has been brought together to Cambridge’s contribution is to together in pursuit of outstanding
re-engineer rice in efforts to avoid future unpick and rebuild the C4 apparatus at excellence in clinical care, clinical
shortages of a cereal consumed by about the molecular level. Dozens of genes are education and health research. The
half of the world’s population. This major known to be involved, and alterations will
partnership will also work to accelerate
scientific endeavour is under the be required in the biochemistry of
innovation and generate wider
leadership of the International Rice photosynthesis, leaf anatomy and cell
economic and social benefits in the
Research Institute in the Philippines, and biology. The collective expertise of the
Greater Cambridge area as well as
is funded by an $11 million grant from Consortium will be required to construct
nationally.
the Bill & Melinda Gates Foundation. and test the prototypes of a C4 rice plant.
‘About a billion people worldwide If the basic science is successful, the first Cambridge University Health
currently live on less than a dollar a day, varieties will be available 10–15 years later. Partners will be managed by a board
and 850 million live in hunger,’ explained ‘There is biological precedent for that includes representatives of all four
Dr Hibberd. ‘By 2050, the demands of changing from a C3 to a C4 pathway in organisations; Professor Patrick Sissons,
increasing population growth and plants, since it’s known to have evolved the Head of the School of Clinical
urbanisation are predicted to result in independently many times,’ said Dr Medicine and Regius Professor of
mass malnutrition. One way to alleviate Hibberd. ‘The challenge is how to repeat Physic, will be Director of the AHSC.
this problem is to develop higher-yielding the process in rice in the necessary time ‘I am delighted that we have been
rice.’ frame to avoid potential food shortages judged worthy of this designation by
In an innovative approach, the C4 Rice in the future.’ a very distinguished panel of our
Consortium plans to reconfigure the international peers and by the
photosynthetic pathway used by rice. For more information, please Department of Health,’ said Professor
Some plants are capable of converting contact Dr Julian Hibberd Sissons. ‘This designation is an
the energy from sunlight into chemical (julian.hibberd@plantsci.cam.ac.uk). important recognition of the excellence
energy more efficiently than others. This Dr Hibberd was recently identified of all four of our organisations and the
mechanism, known as C4 photosynthesis by Nature magazine as one of five great value we can bring collectively to
because the carbon is fixed into four- ‘crop researchers who could change research, education and patient care.’
carbon sugars rather than the usual the world’.

Issue 9 | Summer 2009 | 3


RESEARCH NEWS

Equipping A history of drink and drugs


A large interdisciplinary network is aiming to shed light on the
nanoscientists practices, rituals and attitudes surrounding intoxication.
of the future

©VICTORIA AND ALBERT MUSEUM, LONDON


Cambridge’s new Doctoral
Training Centre (DTC) in
NanoScience will train a
new generation of
nanoscience entrepreneurs.
In a matter of months, the first cohort
of 10 students will begin their four-year
training in nanotechniques, innovation
and business practice. In total, over 50 PhD
students during the next five years will be
trained in the skills and experience needed
to become nanoscience entrepreneurs,
thanks to a new Doctoral Training Centre
in Cambridge funded by £6.8 million from Painting by Shiva Lal, commissioned by the East India Company in the 1850s, showing the transport of opium

the Engineering and Physical Sciences Dr Phil Withington from the Faculty of History Parliamentary Health Committee considering
Research Council (EPSRC). has been funded by the Economic and Social the problem of alcohol.
Directed by Professor Jeremy Research Council (ESRC) to explore the Dr Withington convenes the network
Baumberg with co-director Professor Mark historical and cultural perspectives of with Dr Angela McShane at the Victoria and
Blamire, the DTC draws together a team intoxication and intoxicants. ‘Intoxication is a Albert Museum (V&A). Network participants
from the Departments of Physics, subject that attracts significant contemporary will share perspectives through a series of
Materials Science, Engineering and public attention – whether it’s debates over workshops at the V&A, a conference in
Chemistry. The training includes a first licensing and ‘binge drinking’, or the Cambridge and an edited volume of essays.
year of taught courses, rotating around categorisation and policing of addictive ‘Intoxicants and intoxication is a topic that
the four departments, followed by an substances,’ said Dr Withington. ‘Because the is proving increasingly important both as a
interdisciplinary PhD placement in one of problem of intoxication is trans-historical and subject in its own right and as a means of
the nanoscience research groups around trans-cultural, we can arrive at a better thinking about wider social identities,
the University. An important element of appreciation of this preoccupation through practices and processes in a range of
the programme is exposure to innovation historical and anthropological comparison.’ historical and cultural contexts,’ said
and business courses through the One strand of his research has been the Dr Withington. ‘My own research, for instance,
University’s Judge Business School. formation of an interdisciplinary network to looks at the notion that the expansion in the
‘This is a wonderful investment in consider questions relating to the market for intoxicants was a defining feature
young researchers, complementing the consumption of intoxicants of all kinds. of early modernity. As such, intoxicants can
strong nano-fabrication infrastructure Currently numbering over 50 individuals from be understood as one of the key drivers of
and world-class interdisciplinary groups 27 different institutions, the network includes social change in modern history.’
across the University of Cambridge,’ Cambridge researchers Dr Victoria Harris,
commented Professor Baumberg. ‘The DTC Dr Sarah Howard and Dr Craig Muldrew in the If you are interested in joining the
will provide postgraduates with a broader Faculty of History, and Dr Rebecca Flemming Intoxicants and Intoxication in Historical
experience than currently possible in in the Faculty of Classics. Five members of the and Cultural Perspective Network, please
either graduate research or technological network, including Dr Withington, were contact Dr Phil Withington
innovation and will help them to forge recently asked to submit reports to a (pjw1003@cam.ac.uk).
lasting links with industry.’
The DTC is part of a £250 million
initiative to create 44 training centres Innovator of the Year
across the UK and train over 2000 PhD
students. Minister of State for Science and Professor Stephen Jackson has been honoured for his innovative
Innovation, Lord Drayson, explained the research on DNA repair.
importance of this move: ‘Britain faces The award, organised by the Biotechnology cancer cells, leaving normal cells
many challenges in the 21st century and and Biological Sciences Research Council unaffected. His work developing cancer
needs scientists and engineers with the (BBSRC), honours the UK bioscientist who has therapies is now saving the lives of
right skills to find answers to these been best at turning world-class research into numerous patients.
challenges, build a strong economy and a product, company, service or advice that ‘It’s a tremendous honour to receive
keep us globally competitive. EPSRC’s has had an impact on our lives. Professor this prestigious award,’ Professor Jackson
Doctoral Training Centres will provide a Jackson was named Innovator of the Year at commented. ‘It really reflects that science,
new wave of engineers and scientists to the inaugural ceremony in March. like that funded by BBSRC and Cancer
do the job.’ Professor Jackson's research into DNA Research UK in my group over the years, can
For more information, please contact damage and repair led to the formation of yield both exciting science and commercial
Professor Jeremy Baumberg KuDOS Pharmaceuticals in 1997, following his and social applications.’ Professor Jackson is
(ajc267@cam.ac.uk) or visit discovery that it was possible, in principle, to the Frederick James Quick Professor of
http://np.phy.cam.ac.uk/NanoDTC1.htm develop drugs that specifically prevented Biology at the Wellcome Trust/Cancer
certain DNA repair proteins from working in Research UK Gurdon Institute.

4 | Issue 9 | Summer 2009


RESEARCH NEWS

Harnessing materials for energy


Cambridge has received £1.4 million funding to progress innovative energy solutions.
Research Councils UK (RCUK) has such as light-emitting diodes (LEDs) and methods for organic film deposition, and
announced funding of £12 million to be solar cells. will develop novel ultralight materials based
shared among ten UK institutions to Professor Humphreys’ research on on polymers, metals and composites for use
support collaborations between British gallium nitride (GaN)-based LEDs recently in transportation.
universities and institutions in China, India reached a landmark with the development ‘This exciting project using world-
and the USA. The £1.4 million Science of a new technique to grow GaN on large leading science from Cambridge and UCSB
Bridges Award to the University of silicon wafers, reducing the cost of the LED should result in new types of lighting, solar
Cambridge will help to take existing chip tenfold compared with previous cells and materials for transport,’ explained
research through to prototype products in approaches. The RCUK funding will continue Professor Humphreys. ‘This award will
the field of energy-related materials. this work, as well as build innovative multi- translate research into prototype devices
Cambridge’s team is led by Professor layer solar cells, and LEDs coated with novel that will save energy, reduce carbon
Colin Humphreys in the Department of phosphors to improve colour rendering for emissions, and be not only cheaper but also
Materials Science and Metallurgy, with lighting in the home. Professor Cheetham, better quality than existing devices.’
Professor Tony Cheetham in the same who leads the phosphor research, recently Lord Drayson, Minister of State for
department, Professor Sir Richard Friend in joined Cambridge from UCSB. Science and Innovation, added: ‘The RCUK
the Department of Physics, and Professor New approaches will be developed to Science Bridges Awards are an excellent
Ian White and Dr Vikram Deshpande in the make the harnessing of solar energy more example of how the UK is encouraging
Department of Engineering. It will build viable. Cambridge-based researchers will research which has both strong
upon existing collaborations with the focus on developing low-cost, moderate- international collaborations and close links
University of California at Santa Barbara efficiency, organic solar cells; whereas UCSB- with business.’
(UCSB). based researchers will concentrate on
Five key themes are to be tackled with developing more-efficient cells. Cambridge For more information, please contact
the principal aim of reducing the cost and will also address low-cost manufacturing Professor Colin Humphreys
increasing the efficiency of energy materials through the development of printing (colin.humphreys@msm.cam.ac.uk).

A tool for
monitoring
neurological
intensive care
Clinical researchers have
developed software for
interpreting the enormous
quantities of data generated
by bedside monitors.
Dr Peter Smielewski (left) and Dr Marek Czosnyka

Over the past decade, Dr Peter Smielewski and easily comprehensible to medical Enterprise, to configure the software for
and Dr Marek Czosnyka in the staff. specific needs and to provide advice to
Neurosurgery Unit of the Department of At first, the software focused on data first-time users of the software. The
Clinical Neurosciences have been generated by monitoring patients with majority of royalties received through
developing software as an aid to head injuries and hydrocephalus. But, the licence agreements are returned to
monitoring patients in neurological the software is now increasingly being the academics and the Department to
intensive care. The intensive care applied to conditions such as severe provide much-needed funding for
multimodality monitoring system, or stroke, subarachnoid haemorrhage, further research into finding solutions for
ICM+, has now been successfully licensed cerebral infection and liver failure. helping patients in neurological
by Cambridge Enterprise Ltd as a research ‘Because the software has been licensed intensive care.
tool to medical researchers in over 30 as a research tool, it provides a unified
centres worldwide. platform for collaborative studies with For more information, please visit
The challenge addressed by ICM+ other medical centres, which feeds www.neurosurg.cam.ac.uk/icmplus/
was to collate the huge array of further development of the software,’ about.html or contact Cambridge
complex, constantly changing data explained Dr Smielewski. Enterprise (Tel: +44 (0)1223 760339;
generated by bedside monitors, and to The team also undertakes email: enquiries@enterprise.cam.ac.uk;
present them in a way that is quickly consultancy work through Cambridge www.enterprise.cam.ac.uk).

Issue 9 | Summer 2009 | 5


RESEARCH NEWS

GIFT OF THE MORRIS AND GWENDOLYN CAFRITZ FOUNDATION


NATIONAL GALLERY OF ART, WASHINGTON, DC;
Endless Forms
Science meets art at a
ground-breaking exhibition
revealing the interchange
between Charles Darwin’s
revolutionary theories and
art of the late 19th century.
‘Endless Forms: Charles Darwin, natural
science and the visual arts’ presents a new
perspective that explores both Darwin’s
interest in the visual arts and the vast range
of artistic responses to his ideas. Developed
by The Fitzwilliam Museum in association
with the Yale Center for British Art, the
exhibition is supported by the Wellcome
Trust and the Philecology Foundation.
‘Today, when science and art are
generally considered as separate domains of
intellectual and creative achievement, the Martin Johnson Heade, Cattleya Orchid and Three Hummingbirds, 1871, oil on panelRory Finnin
notion that Darwin’s ideas might have
influenced the arts is perhaps surprising at Endless Forms draws together these exhibition juxtaposes paintings, drawings,
wide-ranging artistic responses; from sculptures and early photographs with
first,’ said Jane Munro, co-curator of Endless
imaginings of prehistoric Earth, to troubled natural history specimens, maps of
Forms and Senior Assistant Keeper of
evocations of a life dominated by the geological stratification, botanical teaching
Paintings, Drawings and Prints at The
‘struggle for existence’; from fantastic visions diagrams and vivid ornithological
Fitzwilliam. ‘Yet the implications of his
of life-forms in perpetual evolution, to specimens, as well as rarely exhibited
revolutionary ideas of evolution by natural
images of colour and pattern in nature material from the Darwin Archive at
selection had a profound effect on society at
Cambridge University Library.
large, putting in question man’s relationship influenced by Darwin’s own response to the
to the natural world and challenging the beauties of the natural world. Endless Forms will be on display at
understanding of what it meant to be With nearly 200 exhibits from over 100 The Fitzwilliam Museum from 16 June
human. As this exhibition sets out to show, institutions worldwide – many on public to 4 October 2009
artists were in no sense immune from this.’ display in the UK for the first time – the (www.darwinendlessforms.org).

Unravelling the secrets of Salmonella infection


Two new studies have uncovered important clues about how a prolific pathogen causes disease.
Salmonella bacteria are infamous intestinal Understanding these events at a led by Dr Andrew Grant, Dr Pietro Mastroeni
pathogens that infect humans and animals, molecular level has been helped by findings and Professor Duncan Maskell developed
causing about 1.3 billion cases of human published by Dr Daniel Humphreys and Dr molecular tags to mark populations of
food-borne diarrhoea and systemic typhoid Peter Hume in a team led by Professor Vassilis otherwise identical bacteria; in combination
fever each year throughout the world. Koronakis in the Department of Pathology. with multicolour fluorescence microscopy,
Following infection, the bacteria deliver a The research, funded by the Wellcome Trust, these tagged bacteria could then be tracked
cocktail of virulence proteins that take has uncovered features of an unexpected during an infection. By constructing
control of the cell’s cytoskeleton and pathway by which Salmonella manipulates mathematical models, the team have
networks of signalling pathways, growing the host cell to promote its own growth. managed to tease out the sequence of
inside infected cells in membrane-bound Salmonella was engineered to deliver a events, providing a more sophisticated
Salmonella-containing vacuoles (SCVs). mutant protein that stalled activity of the picture of how an infectious disease is driven
than previously possible. Thanks to recently
PROFESSOR VASSILIS KORONAKIS

protein it binds to in the infected cell, thereby


capturing it. Using protein biochemistry and awarded funding from the Medical Research
fluorescence microscopy, it was shown that Council (MRC), they are now ready to exploit
these systems to understand the impact of
the Salmonella protein subverts the assembly
key host and bacterial factors on the
of protein complexes required for membrane
pathogenesis of Salmonella at the level of
fusion and formation of intracellular
individual bacterial subpopulations. In the
organelles, ensuring a safe, rich, intracellular
long term, this technique will provide a basis
replicative niche for itself. Not only does this
for targeting individual bacterial components
study suggest potential new targets to
in vivo with novel drugs and vaccines that are
counteract disease but it also uncovers new directed specifically to the sites of infection.
aspects of mammalian cell biology.
Meanwhile, scientists at the Department For more information, please contact
of Veterinary Medicine have pioneered a Professor Vassilis Koronakis
Salmonella (red) in the process of establishing its
vacuolar niche (green) in a human cell
technique to track the pattern and spread of (vk103@cam.ac.uk) and Dr Andrew Grant
(cytoskeleton stained in blue) bacterial infection within the body. The team (ajg60@cam.ac.uk).

6 | Issue 9 | Summer 2009


RESEARCH NEWS

TOPKAPI SARAY MUSEUM, ISTANBUL


Greek Grammar to fill the gap
A new Grammar will be the first comprehensive description of
the medieval and early modern Greek language.
For the past five years, a team led by syntactic features that are characteristic of
Professor David Holton in the Modern Greek Greek today.
Section of the Faculty of Modern and Fortuitously, 1100–1700 is also a period
Medieval Languages has been gathering, in which texts in the vernacular are available
analysing and organising linguistic data for in sufficient quantities for researchers to
a new Greek Grammar. Co-directed by observe trends and identify the factors that
Professor Geoff Horrocks (Faculty of influence variation. ‘But, despite the
Classics), the project is staffed by two full- increasing availability of this material, there
time research associates, Dr Notis Toufexis has been no systematic and detailed
and Ms Marjolijne Janssen, and two account of the development of the Greek
honorary consultants, Dr Io Manolessou language during this crucial period,’ said
and Dr Tina Lendari, and is funded by the Professor Holton. ‘The Grammar aims to fill a
Arts and Humanities Research Council serious gap in the history of Greek. This
(AHRC). standard reference work will underpin a
Greek is one of the world’s oldest growing interest in medieval and early
recorded languages, with a documented modern Greek literature and its historical,
history spanning 34 centuries. Although social and cultural context.’
scholars have analysed and described the The Grammar spans a geographical area
Greek of the Classical, Hellenistic and from southern Italy to the Black Sea, Sources for the Grammar include texts like this
Roman periods in detail, the linguistic encompassing written texts of all kinds, and manuscript, Serailiensis graecus 35 (folio no. 34,
situation is much less studied after the end giving a full account of linguistic recto)
of Antiquity. At around 1100 AD the developments within this period. It is a
beginnings of the modern vernacular first high-tech project, using electronic For more information, please
became evident, and over the next 600 databases and digitised corpora to store contact Professor David Holton
years the language underwent significant and sort a mass of information. Once (dwh11@cam.ac.uk) or see
changes, with the medieval vernacular completed, the Grammar will be published www.mml.cam.ac.uk/greek/
gradually acquiring the morphological and by Cambridge University Press. grammarofmedievalgreek

More stories published


Solar-powered racing heats up online…
Construction of the latest solar-powered racing car from the
Cambridge University Eco Racing (CUER) team is under Secret of night vision
starter’s orders. uncovered
Cambridge physicists have discovered
LOVEGROVE STUDIO

that the ability of nocturnal animals to


see in the dark lies in the unusual way
that DNA is packaged in retinal
photoreceptor cells.

Endowment for Ancient


Greek culture
An outstanding gift has endowed a
new Professorship and will
Cambridge University Eco Racing’s underpin research and teaching
new solar racing car focused on the cultural
achievements of the Ancient
The car, code-named ‘Bethany’, will compete extraordinary performance, CUER’s
Greeks.
in the World Solar Challenge in Australia in engineering team has systematically
October 2009. Designed by an independent reduced energy usage for each part of the
student team, and sponsored by Cambridge car. Bold leaders inspire
Precision and Hewlett-Packard, the vehicle ‘At a time when the automotive industry faithful followers
showcases cutting-edge environmentally is being forced to look at a low-carbon New research from the Department
friendly technology that is applicable to the future,’ said CUER’s Team Manager, Anthony of Zoology has shown that it’s not
Law, ‘our vehicle demonstrates the just personality that counts in fish
next generation of electric vehicles.
enormous potential of electric vehicle leadership, it’s how other fish
By taking an uncompromising approach
technologies.’ The hope is that ‘Bethany’ will respond to it.
to efficiency and performance, CUER has
provide the UK’s best-ever performance in
developed a vehicle capable of cruising at the 3000 km endurance race across the
60 mph using the same power as a Outback. To view these stories and much
hairdryer. The car will weigh just 160 kg and more, please visit
sports 6 m2 of the world’s highest efficiency For more information, please visit www.research-horizons.cam.ac.uk
silicon solar cells. To achieve the car’s www.cuer.co.uk

Issue 9 | Summer 2009 | 7


SPOTLIGHT ON DARWIN

Mr Darwin’s postbag
Through the Two centuries after his birth, Charles Darwin Today, the world’s largest archive of
is probably one of the most famous Darwin’s correspondence, together with
Darwin scientists who ever lived, and certainly the his notes, manuscripts and annotated
Correspondence most controversial. Yet, far from being the books and periodicals, is housed in
Project, a rich isolated genius of legend, Darwin was a Cambridge University Library. The
prolific correspondent, who used letters richness of this resource has made the
collection of letters very much as we use email. They were the Library an international centre for studies
held at Cambridge lifeblood of his research. His correspondence of Darwin and 19th-century science.
University Library is provides us with a remarkable record of Scholars from all over the world regularly
intellectual development, from his voyage visit the manuscripts room and
both transforming around the world on HMS Beagle, to the communicate with its expert staff. They
our understanding decades formulating and honing his also depend on the Library’s collection
of one of the theories. They also provide a window onto of 19th-century books and scientific
his extraordinary global network of periodicals, unrivalled in its accessibility
greatest scientists of informants – the Victorian men and women and extent.
the 19th century and who provided him with observations on the These remarkable resources have
providing a fauna, flora and peoples of the world: from led to an ambitious project, now in its
gardeners, nurserymen, geologists and 35th year and planned to continue until
panoramic vision naturalists, to diplomats, army officers, 2025: to publish a comprehensive
of the era in which novelists and suffragettes. They offer a chronological edition of all known
he lived. remarkable picture of civil discussion and letters, both to and from Charles Darwin,
reasoned debate, from which we would do wherever they might be in the
well to learn. world.

8 | Issue 9 | Summer 2009


SPOTLIGHT ON DARWIN
REPRODUCED BY PERMISSION OF THE SYNDICS OF CAMBRIDGE UNIVERSITY LIBRARY

Building and interpreting controversies about science and religion, the Andrew W. Mellon Foundation, British
the nature of evolution, and issues in Ecological Society, Isaac Newton Trust,
an archive ecological science. In this way, the John Templeton Foundation, National
The bulk of the collection was given to the meticulous research required to annotate Endowment for the Humanities, and
Library by the Darwin family and the Pilgrim the letters becomes the starting point for National Science Foundation. Funding is
Trust in 1942, and since then materials have further understanding. currently being sought for the next phase
continued to be added. Work on publication All the letters are being published in of work.
of the letters began in 1974, with a team led chronological order in the complete edition
by an American scholar, Frederick Burkhardt,
of the Correspondence of Charles Darwin by
with the aid of Sydney Smith, a zoologist in
Cambridge University Press, of which the
the University of Cambridge. The first
17th of a planned total of 30 volumes will
10 years were occupied solely by searching
be published this summer. The letter
worldwide for any letters the team could
transcripts and notes are also made freely
find and putting them into initial
available in a searchable online database
chronological order – less than half of the
five years after printed publication
known letters have a date written on them.
(www.darwinproject.ac.uk). As new letters
A total of almost 15,000 letters
come to light, or as new information on
exchanged by Darwin with nearly 2000
their contents or dating becomes available,
correspondents, spanning the period from
the database is revised. The aim is to
1821 until his death in 1882, have now been
provide a unique, comprehensive and
located, some in libraries and some in
reliable source of information on his
private collections. One letter even turned
correspondence, as well as major topics in
up on a recent broadcast of the BBC’s
Antiques Roadshow. About 8000 are in
Darwin’s life and work. Professor Jim Secord and
Cambridge, including important materials Dr Alison Pearn
on deposit from the Down House Trust. Funding – past and future
Each letter requires painstaking A project on this scale requires commitment
transcription, retaining all original spellings from funding partners who understand the
(and mis-spellings!), followed by annotation. importance of supporting accessible, For more information, please contact
Crucial bits of information are gradually innovative research carried out to the Professor Jim Secord, Director
fitted together, each informing and being highest standard over many years. (jas1010@cam.ac.uk), and Dr Alison
informed by another. The result gives not Contributions from private donors have Pearn, Assistant Director
just a new perspective on the 19th century, been essential for the research to progress, (ab55@cam.ac.uk), of the Darwin
but fundamental insights into our own as well as long-term support provided by Correspondence Project
(www.darwinproject.ac.uk).

Darwin after On the Origin of Species Darwin on locust dung

The Darwin Correspondence Project is entering a new phase: the letters to and from What would you do if someone sent you
Darwin as he formulated his thoughts on the descent of man. locust dung in a letter? For Charles
Publication of On the Origin of Species in 1859 is often presented as the climax of Darwin, this became a welcome
Darwin’s career. In fact, it was only a beginning. Darwin knew that once he had gone contribution to solving one of the many
public with his theory of evolution by natural selection, much more would be demanded fascinating puzzles opened by the
of him. Twenty-three years of astonishing scientific productivity ensued, and in that time epoch-making On the Origin of Species.
Darwin’s correspondence grew phenomenally. The little packet of dung, along with a
One of the topics barely touched on in Origin was the evolution of man. Darwin had host of other information, was sent to
always planned to include a chapter on humans, but left it out lest it led to unnecessary Down House by James Philip Mansel
controversy. During the later years of the 1860s, accused of concealing his opinions, Weale, a naturalist and farmer in Cape
Darwin began to gear up for a full-scale assault on the citadel. Where did humans come Colony in southern Africa.
from? Why are there different sexes? Why do races differ from one another? Are there ‘When I recd the locust-dung I cd not
characteristics – language, music, morals, rational thought – that decisively separate imagine what it was,’ Darwin replied, ‘& I
humans from the rest of the animal kingdom? might have gone on guessing till
The Correspondence Project has now reached the moment when these fascinating doomsday.’ Once he read Weale’s letter,
questions come to the fore. Tackling human origins with the same tools that had proved he knew what to do. Dissecting the dung
so successful in understanding the rest of nature, Darwin extended his global network of under his microscope, Darwin found
correspondents, making enquiries among missionaries, soldiers, merchants, diplomats seeds of plant species that he
and travellers. The result, The Descent of Man, and Selection in Relation to Sex, appeared in subsequently germinated in his
two volumes in 1871, and a closely related work, The Expression of the Emotions in Man greenhouse at Down House. Samples
and Animals, was published in the following year. were sent to his close friend, the botanist
In producing the volumes of letters dealing with Descent and Expression, the Project Joseph Hooker, who identified some of
has plans for an extensive programme of supporting research, focused on the issues of them as carrot-seed grass, a noxious
race, gender and human nature. Work on this phase will be carried out through a new weed that was adversely affecting the
association between the Correspondence Project and the History of Science Department quality of the wool produced in the Cape.
at Harvard University, where the work will be led by Professor Janet Browne, author of an Because Darwin knew that locusts could
award-winning two-volume biography of Darwin. This exciting transatlantic initiative be blown far out to sea, he recognised
aims to open up new perspectives on what is, by any standard, among the most that the seeds in their dung could assist in
significant episodes in modern history. the distribution of species, an important
fact for a new edition of Origin.

Issue 9 | Summer 2009 | 9


SPOTLIGHT ON DARWIN

On the wings of a butterfly


Since Darwin’s time, Amazonian butterflies have fascinated
evolutionary biologists as examples of evolution in action.
On reading Henry Walter Bates’ 1862 account models with different patterns, the
of his travels in the Amazon, Charles Darwin researchers have shown that the butterflies
was captivated not only by Bates’ description choose to mate with individuals that look the
of the stunning diversity of butterfly species same as themselves; because of this, over
and wing patterns found in the Amazonian time, different patterns are likely to split into
jungle, but also by the impressive mimicry new species. In addition, hybrids between
between unrelated species. Darwin wrote: ‘It populations with different patterns have
is hardly an exaggeration to say, that whilst intermediate patterns that are not recognised
reading and reflecting on the various facts by predators as harmful and therefore suffer
given in this Memoir, we feel to be as near disproportionately from attacks, reinforcing
witnesses, as we can ever hope to be, of the the split into new species.
creation of a new species on this earth.’1 This dual role of wing patterns in
Bates hypothesised that mimicry evolved signalling both to predators and to potential
to confuse predators. Edible butterflies, for mates makes pattern a ‘key trait’ for
instance, copied the wing patterns of toxic speciation. As Bates suggested, shifts in wing
species so that predators would avoid eating patterns do indeed lead to the evolution of
them. He also described what looked like new species.
evolution in action: he observed a
continuum, from variable species, in which Selection signatures
different wing patterns were found together One of the current hot topics in evolutionary
in the same locality, through to related biology is to what extent we can predict the
species with different wing patterns. Now, genetic path of evolution. One particular
150 years later, modern science has taken this Heliconius species (Heliconius melpomene) is
to another level, with new research that aims an ideal system in which to address this
to study the predictability of evolution by question because it has many geographic
revealing the genetic basis of wing pattern populations with very different colour
mimicry. patterns.
A major
The importance of pattern new
We now recognise that not only do edible project
species mimic nasty ones (today called focusing on
Batesian mimicry), but that several nasty the genetic
species can also benefit from mimicking one basis of wing
another (Müllerian mimicry) – bees and patterns has
wasps being a familiar example. Many of the commenced in
Heliconius, or passion Amazonian butterflies described by Bates are the Jiggins
vine butterflies
in fact Müllerian mimics, and the best-studied lab with
group are the genus Heliconius, the passion funding from
vine butterflies. Work by Dr Chris Jiggins’ the Biotechnology
group in the Department of Zoology has and Biological Sciences
focused on Heliconius butterflies as a case Research Council (BBSRC),
study in evolutionary biology. Royal Society, Leverhulme Trust
By testing the role of Heliconius wing and Natural Environment Research Council
patterns in the wild, Dr Jiggins (NERC).
and others have Over the past decade, the researchers
confirmed have been collecting different forms of
Bates’ H. melpomene from around South America,
hunch: carrying out genetic crosses at a field station
changes in Panama. These crosses have shown that
in wing dramatic differences in colour pattern are
pattern play controlled by just a handful of genes and that
a big role in these genes are clustered together on four
determining how out of the 21 Heliconius chromosomes. The
successful the butterflies are genes act as wing pattern ‘switches’, turning
in both mating and avoiding on and off the presence of major pattern
being eaten. Using flapping elements, such as a large red forewing band.

10 | Issue 9 | Summer 2009


SPOTLIGHT ON DARWIN

The challenge is to find out precisely what shared genetic system.


these genes are and how they work. While predation against
In collaboration with the Wellcome Trust abnormal wing patterns

DR MATHIEU JORON
Sanger Institute, regions of the butterfly drives the evolution of
genome are being sequenced to identify mimicry through Darwinian
the specific nature of the pattern switches. natural selection, a shared
The expectation was that the switches developmental system may bias the
would correspond to well-known genes, raw materials in favour of certain kinds
perhaps controlling wing development or of patterns.
colour pigments. In fact, the two genomic Of course, the link between wing
regions studied so far each contains around pattern adaptation and speciation requires
20 genes, none changes in behaviour. The mating
of which is preferences of divergent populations need
known for its to evolve in order to match their wing
involvement in patterns. Remarkably,
these processes. crossing
This is in itself experiments
exciting as it implies currently
that novel being carried
mechanisms of out in Panama
pattern determination show that the genes
are operating; current underlying these changes
research is focused on determining in behaviour are closely
which, of all these genes, are having associated with colour pattern
an effect in the butterfly. genes. It seems that there are ‘hot spots’ in
the genome for evolutionary change,
Genetics of mimicry influencing traits as diverse as wing patterns
What attracted Darwin and others to and mating preference.
mimicry as a case study in evolution is its
repeatability – the same patterns An enduring example
evolve in distantly It is an exciting time to be studying butterfly
related species. A mimicry. The combination of population
key question for genetic, developmental and behavioural
an evolutionary approaches is starting to answer the issues
geneticist is Darwin and Bates themselves debated –
therefore whether questions that were posed at the very dawn
the patterns are of evolutionary biology. Throughout the
generated by the same intervening decades, Heliconius butterflies
genetic mechanisms, or have persisted as an example of evolution in
different ones. Again, Heliconius action. With the imminent sequencing of
butterflies are a good system to the Heliconius melpomene genome, they will
study this. no doubt continue to be so for some time
Heliconius melpomene co-mimics yet. Charles Darwin would surely have
another species, Heliconius erato, all over the approved.
neotropics – in any location you care to look
you will find that the two species have 1[Darwin, C.R.] 1863. [Review of ] Dr Chris Jiggins
evolved identical patterns. Recently, in Contributions to an insect fauna of the
collaboration with research groups in the Amazon Valley. By Henry Walter Bates, Esq.
USA, it has been shown that pattern Transact. Linnean Soc. Vol. XXIII. 1862, p. 495.
switches in the two species are controlled Natural History Review 3, 219–224.
by the same regions of DNA, such that
genes at identical locations in the genome
code for either a red forewing band or a For more information, please contact the
yellow hindwing bar. This implies that author Dr Chris Jiggins
evolution of the same mimicry patterns in (c.jiggins@zoo.cam.ac.uk) at the
the two species has been made easier by a Department of Zoology.

Issue 9 | Summer 2009 | 11


SPOTLIGHT ON DARWIN

DR DAVID NORMAN
In Darwin’s footsteps:
the geology of the Galapagos
David Norman explains how a fragment of lava set in motion a
journey to the Galapagos 170 years after Darwin’s epic voyage.

Buccaneer Cove (with the flanks of Cerro Cowan in the background), Isla Santiago, Galapagos, where
Darwin landed in 1835, as photographed by the Cambridge expedition retracing Darwin’s footsteps

A dispute over the provenance of some of Charles Darwin’s rock beneath the oceanic plate upon which the Galapagos sit has an
collection, now housed at Cambridge’s Sedgwick Museum of Earth unusual shape and dynamic relationship with the islands above.
Sciences, led to an expedition to the Galapagos two years ago that in
turn has resulted in an entirely new analysis of the geology of the And the piece of lava?
Archipelago. The specimens are part of a collection of some 2500 Almost as we have come to expect, Darwin’s notes were correct (and
rocks, minerals and fossils collected by Darwin on his 1831–1836 the Museum curators had not slipped up either!). The rock type that
voyage aboard HMS Beagle. Darwin identified as a ‘trachyte’ was found again (despite proving
somewhat elusive) on the flanks of Cerro Pelado, a near-perfect small
Journey to the Galapagos volcanic crater close to the summit of the island. And indeed all the
The germ of an idea to re-visit the Galapagos took hold when major locations visited by Darwin yielded rock types that reflected his
Dr Sandra Herbert, a visiting scholar from the University of Baltimore, original collection held in Cambridge.
noted a longstanding dispute concerning the provenance of lava This information will also enrich the lines of investigation pursued
rocks labelled by Darwin as ‘trachyte’ collected on James Island (now by Dr Lyall Anderson, Isaac Newton Trust Research Fellow at the
known as Isla Santiago). According to established understanding of Department of Earth Sciences. Dr Anderson is taking a fresh look at
the island’s geology, the rocks could not have come from the island; the collection in the context of Darwin’s early thoughts on geology,
by implication, either Darwin had mixed them up or the Sedgwick using Darwin’s copious geological field notebooks housed at the
University Library.
Museum had inadvertently mislabelled the specimens during
Clearly, as has proved so often to be the case, Charles Darwin
curation. Perhaps by re-visiting the island, establishing Darwin’s route
chose to land on, and sample from, a particularly interesting place
and collection sites, the matter could be cleared up once and for all?
both scenically and biologically, …and geologically.
In 2007, an expedition led by Dr David Norman, from the
Department of Earth Sciences and Director of the Sedgwick Museum,
arrived at the Charles Darwin Research Station in the Galapagos
Archipelago; members of the expedition included Dr Sally Gibson
and Andrew Miles from Earth Sciences, Dr Herbert and Dr Dennis
Geist (University of Idaho). This would be only the second time the
geology of Isla Santiago had been investigated since the 26-year-old
Charles Darwin set foot there in 1835.
With funding from the US National Science Foundation, Christ’s
College and Trinity College, the team integrated historical research
with the collection of new rock samples from individual lava flows
that have occurred at intervals across Isla Santiago. Fresh samples of
rock were collected, with special permission from the Parque Nacional
Galapagos, yielding an entirely new collection of volcanic rocks that Dr David Norman
reflect different phases of eruptive activity across the island. For more information, please contact the author Dr David
The geological history of the island itself is now the subject of Norman (dn102@cam.ac.uk). Dr Norman is Director of the
further investigation in the laboratory using the new samples. It is Sedgwick Museum and a palaeontologist in the Department
already clear from this ongoing research that the island has an of Earth Sciences. ‘Darwin the Geologist’, a major exhibition
unusual history, with volcanic activity still evident in the recent at the Sedgwick Museum, opens on 7 July 2009
historic past; this alone indicates that the hot mantle ‘plume’ that lies (www.sedgwickmuseum.org).

12 | Issue 9 | Summer 2009


SPOTLIGHT ON DARWIN

UNIVERSITY HERBARIUM, DEPARTMENT OF PLANT SCIENCES


Collaboration between the University
Herbarium and Microsoft Research Ltd will
make a unique botanical collection available
to a world-wide audience.

Displaying the foundations


of evolutionary thinking
The Department of Plant Sciences at Cambridge houses over a
million pressed, mounted and named plant specimens. Amassed
over three centuries, the collection includes about 2700 plants
collected by Charles Darwin on his HMS Beagle trip and the most
comprehensive and up-to-date collection of British plants.
In offering a rare and unparalleled insight to the diversity of
plants, the Herbarium has become increasingly precious given
today’s growing urgency to catalogue biodiversity. But, like many
museum collections of this scale and fragility, its holdings are only
available, in a controlled manner, to academic visitors to Cambridge.
To increase its accessibility to a global audience, while preserving the
integrity of this historical treasure, a project began three years ago to
put specimens from the Herbarium on the web. With funding and
technological support from Microsoft Research Ltd, Professor John
Parker, Curator, and Gina Murrell, Assistant Curator, have been
developing a coherent, logical and imaginative web portal to be
made available for academic research and teaching, and for the
enjoyment of everyone.

Henslow’s vision and Darwin’s gift


The Herbarium was the creation of John Stevens Henslow, Professor
of Botany and founder of the Botanic Garden at Cambridge.
Henslow’s research on the nature of species was at its peak in the
1820s when Darwin attended his lectures and field trips, and it was
Henslow who recommended Darwin for the Beagle voyage. When
Darwin visited the Galapagos, he collected and dried all plants in Four specimens of a grass (Vulpia), showing extreme size variation in a
flower, sending them back to Henslow to be mounted. Henslow had population at Bahia Blanca, Patagonia, collected by Darwin but mounted by
Henslow in Cambridge while Darwin was still on the Beagle
informed him that oceanic islands such as the Galapagos were rich
in endemic species, a fact that helped crystallise Darwin’s theory of
the origin of species. An auspicious date
Henslow’s Herbarium has increased in size enormously over the
The aim of the five-year digitisation project is to place about 50,000
200 years since then, particularly in 1866 when 55,000 specimens of
specimens on the web by 2011. The Henslow and Darwin collections
the Lindley Herbarium were added; the Lindley collection provides a
are the priority, with a launch date of 24 November 2009, the 150th
remarkable history of 19th-century plant-hunting explorations of
anniversary of the publication of Darwin’s On the Origin of Species. Each
North America and Australia. The plants of the whole world, and Herbarium sheet is being digitally photographed, an appropriate
particularly of Great Britain and mainland Europe, have enriched the database has been developed and data have been input, and a robust
collection through gifts, exchanges, benefactions and purchases. infrastructure to deliver fast, interactive responses in real-time to
search queries is currently being built.
Promoting research
The major research project in the Herbarium is the preparation of
the most definitive account of the British and Irish flora ever
undertaken, based around this superb collection. Peter Sell has
worked in the Herbarium for over 60 years and, in collaboration with
Gina Murrell, has for 20 years been compiling the taxonomy, ecology
and distribution of every species to create a botanical snapshot of
the millennium. Volume 3 of this five-volume set has just been
published by Cambridge University Press.
As well as a fundamental botanical research purpose, there is
also an important historical perspective to the Herbarium. Darwin’s
plants give a fascinating glimpse into the origins of Darwin’s
thoughts, showing how Henslow gave Darwin concepts of
populations, variation and the nature of species. Henslow
intentionally organised his Herbarium collections to serve as an Professor John Parker
experimental tool for an inquiry into species and their limits. But
whereas Henslow held a creationist’s viewpoint, Darwin’s own views For more information, please contact the author Professor
changed as his theories of evolution by natural selection gradually John Parker (jsp25@cam.ac.uk) at the University Herbarium,
took shape. Department of Plant Sciences.

Issue 9 | Summer 2009 | 13


SPOTLIGHT ON DARWIN

Leverhulme Centre for Human Evolutionary Studies


Cambridge anthropologists are increasingly looking at human evolution not just as a path
through the remote past, but also as a way to explore humanity today.

Cambridge has a long tradition of research anthropologists and psychologists, in the Philippines with evolutionary
into human evolution. Alfred Haddon, the studying people today, can make theoreticians who are unravelling the
founder of the Faculty of Archaeology and inferences about evolutionary history and biology of size and demography.
Anthropology, was one of the first processes, and ultimately about human Geneticists are searching for the
generation of Darwinists who explored nature. LCHES was designed to bring all of underlying genetics of size and shape,
the human world through the lens of these together. while anthropologists are searching the
evolution; Louis Leakey, who opened museums of the world for skeletons that
up the African search for human origins Understanding humans is a can track this in the past. And
predicted by Charles Darwin, is one of question of evolution understanding how humans became
the most notable of Cambridge A multidisciplinary institution has to be dependent upon culture has led to
anthropologists. In recent years, that more than the sum of its subjects. At the archaeologists working with living apes to
tradition has been turned from the heart of LCHES is the simple idea that see how they use and exploit technology.
contributions of scattered individuals to research should be question-driven. Evolution naturally makes one think of
a full institutional commitment. The Different questions require different the past, but that evolutionary past lives
Leverhulme Centre for Human techniques and methods and, in particular, on in us today. Understanding how we
Evolutionary Studies (LCHES) was founded combinations of approaches. For example, survived in the past may be a step towards
in 2001 by Dr Marta Mirazón Lahr and we can ask where and when modern future survival.
Professor Robert Foley to be at the humans evolved, and evolutionary
forefront of international research; it genetics can indicate Eastern Africa as the
reflects both the growing power of most probable location. But it is only by
evolutionary science and the endless integrating these predictions with the
fascination with the origins and nature exploration for fossils and archaeology in
of our own species. places such as northern Kenya that
research can both give substance to the
Fossils, tools, apes and genes genetics and provide an understanding of
When we think of human evolution and why we evolved there.
how it is researched, a number of images The aim of the Centre is to act as the
come to mind. One might be some African means by which researchers from a wide
desert, yielding rare fossils of our ancestors. breadth of disciplines – anthropology, Professor Robert Foley and
Another might be an archaeologist, archaeology, linguistics, genetics, Dr Marta Mirazón Lahr
digging up the earliest evidence for psychology, zoology and evolutionary
For more information, please contact
complex tools. In another direction lies the aspects of geography – can formulate and
the authors Professor Robert Foley
study of living apes, whose behaviour can develop joint research programmes. This
(r.foley@human-evol.cam.ac.uk) and
provide clues about ancestral forms. More has led, for instance, to an exploration in Dr Marta Mirazón Lahr (m.mirazon-
recently, the use of genetics has become India, Papua New Guinea and the Solomon lahr@human-evol.cam.ac.uk) at the
more visible, with patterns of Islands of how genetic diversity can be Leverhulme Centre for Human
contemporary genetic diversity throwing shaped by language barriers and thus Evolutionary Studies (www.human-
light on evolutionary patterns in the past. influence evolutionary history. Finding evol.cam.ac.uk). External funding for
Genes are now even being extracted from out how humans have come to vary so the Centre has come from the
fossils, to add to the evidence. And, finally, much in size has brought together Leverhulme Trust, the Wellcome Trust
we can even think of the ways in which anthropologists studying hunter-gatherers and Cambridge in America.

14 | Issue 9 | Summer 2009


SPOTLIGHT ON DARWIN

DR GEOFF PARKS AND DR SAFFRON WYSE


Several performance
measures must be
considered when
designing the combustor
for an aeroengine

Design optimisation by evolution


By adopting the principles of natural selection,
engineers are using survival of the fittest to breed
better design solutions.
An important legacy of Charles Darwin’s designer wants to improve several rules of the game can change too: for
theories, unimaginable 150 years ago, has objectives, or attributes, of the design instance, the group has found that, in
been the development of a thriving field of simultaneously. Inevitably these objectives multi-objective optimisation problems,
computational science based around the are often in conflict as it’s frequently not genetic diversity is often naturally
ideas of evolution by natural selection. possible to improve one objective for an maintained in the population as it
Evolutionary computation, as it is known, optimised design without making another spreads out across the trade-off surface
encompasses a variety of methods, the worse. Evolutionary computation methods and therefore highly selective breeding
most well known being evolution strategies, can readily be adapted to tackle multi- schemes in which only the best solutions
genetic algorithms and genetic objective problems. In so doing, they are allowed to reproduce can be very
programming. All seek to solve challenging identify the trade-off surface – the set of effective.
optimisation problems (the problem of solutions for which it is impossible to By adapting the principles of
finding the best solution from all feasible improve one objective without another Darwinian evolution, we can develop
solutions) in a vast range of application deteriorating – allowing the designer to methods that enable engineers to design
areas. make a fully informed choice of final design. better submarine propulsion systems or
Although the methods differ in the There is widespread interest in applying nuclear reactor reload cores or… in fact,
detail of their implementation, they all these types of optimisation technique to the potential applications are about as
follow the same basic blueprint: ‘parents’ real-world engineering design problems. diverse as the natural world itself.
are selected from a current population of Researchers in the Computational Design
available solutions, with better (fitter) Group are using evolutionary computation
solutions being selected more often; to tackle a diverse range of design
‘offspring’ are bred by combining portions optimisation problems: from improving
of the parents’ ‘chromosomes’ (the set of hybrid electric vehicle drive systems; to
parameters that define the solution); and trading off reduction in pollutants and noise
finally, small random ‘mutations’ are made to in aeroengines; to designing cheaper, more
the offspring’s chromosomes, analogous to compact space satellites.
the copying errors that occur in real-world
biological reproduction. The end result – the Selective breeding
algorithm – can often succeed in solving Developing evolutionary algorithms that
problems where other methods fail. perform well on particular applications can
pose challenges. It is not always
Engineering design straightforward to find a suitable way to
The Computational Design Group, led by encode designs ‘genetically’ such that when
Dr Geoff Parks
Dr Geoff Parks within the Cambridge two good solutions are combined there is a
Engineering Design Centre, aims to improve reasonable chance that the characteristics For more information, please contact
the design process and designed products that made them good are preserved in their the author Dr Geoff Parks
by developing methods that effectively offspring. Interesting research questions (gtp10@cam.ac.uk) in the Engineering
exploit the potential of computational under investigation by the group also Design Centre at the Department of
optimisation to enhance the creativity and surround the issues of how parents are Engineering. Much of the group’s
decision-making of engineering designers. selected. In a virtual world, one can try research is supported by the
The optimisation of an engineering schemes that would be physically or Engineering and Physical Sciences
design is usually a multi-objective task: the ethically impossible in the real one. The Research Council (EPSRC).

Issue 9 | Summer 2009 | 15


SPOTLIGHT ON DARWIN

What Darwin
didn’t know:
viruses and
evolution
Once a retrovirus has infected a cell, its RNA genome is replicated into DNA (depicted here in red), which
integrates into the genome of the infected cell

Scientists in the When Charles Darwin’s On the Origin of transmission of viruses that have the
Species went to press in 1859, viruses had capacity to cause high morbidity and
Department of
yet to be discovered – it would be another mortality. But some of the more insidious
Veterinary 40 years after publication before the viral infections may have a much greater
Medicine are ‘concept of viruses’ was proposed, and a impact on global health because, in the
studying viruses as century later before breakthroughs in viral early stages, they cause subclinical
research would provide a clear infections, with the disease developing
pathogens in host understanding of their genetic make-up, slowly and sometimes going unnoticed for
populations, how they replicate and how they cause many years. Human immunodeficiency
endeavouring to disease. Perhaps one of the most virus (HIV), hepatitis B virus (HBV) and
unexpected findings has been the hepatitis C virus (HCV) are examples that
understand the discovery of the degree to which viruses have caused relatively silent epidemics, in
implications of our have been an evolutionary force, as some cases infecting hundreds of millions
shared witnessed by the accumulating genetic globally.
and immunological evidence of the Epidemics are not confined to humans.
evolutionary ancient battles between viruses and their Not only have we witnessed animal
history. hosts. Scientists in the Laboratory of Viral epidemics (epizootics) that all too recently
Zoonotics led by Professor Jonathan have circulated through our domestic
Heeney are asking key questions about the livestock (foot and mouth disease, classic
evolution of viral pathogens by studying swine fever and bluetongue), but animal
the transmission of viruses from animals to viruses can also be transmitted to humans
humans. under a variety of conditions. A recent
example of this type of zoonotic transfer is
Epizootics and zoonotics the bird-to-human transmission of the
Human epidemics caused by highly highly pathogenic avian flu virus, which
contagious acute infections such as raised global concern regarding a new
influenza and severe acute respiratory human flu pandemic.
syndrome (SARS) loom foremost in our How do these viruses evolve to enable
minds when we think of the large-scale them to cross between species? What

16 | Issue 9 | Summer 2009


SPOTLIGHT ON DARWIN
DR JON HERAS, EQUINOX GRAPHICS (WWW.E-NOX.NET)

complex series of events is required for individuals being highly susceptible to RNA viral infections such as HIV and HCV.
the virus to infect humans and sustain infection, while others have increased Working with teams in London and
infections at sufficient levels in a new resistance. Research in Professor Heeney’s Lausanne, the first early clinical trials have
species to become readily transmissible lab is analysing how different natural recently been completed, and subsequent
within a new population? Why are some African primate hosts have developed a trials to optimise immunity and delivery are
individuals protected from developing relative resistance to AIDS-like diseases being planned. New vaccine candidates are
full-blown disease despite being infected? caused by these viruses. The data also in development and the outcome of
These are the sorts of question that suggest that the animals have evolved their use for the containment of rapidly
interest scientists in the Laboratory of Viral mechanisms to control immune evolving blood-borne pathogens such as
Zoonotics. This line of research involves activation caused by new viral pathogens. HIV and HCV is being actively studied.
the application of new molecular Another line of investigation is
technologies to address aspects of focused on how intrinsic host restriction
zoonotic infections of importance to both factors (cell factors that can block or
Cambridge Infectious
veterinary and human health. impair a stage of the viral life cycle) in a Disease
variety of non-human primates have
Fossils of ancient virological influenced the evolution of different SIV Cambridge Infectious Disease (CID) is a
viruses. At one stage in this evolutionary Cambridge-wide initiative to bring
battles process, a subtype of SIV was transmitted together diverse groups studying
Of particular interest to the team is a from chimpanzees to humans, giving rise aspects of infectious diseases, with the
family of viruses known as the to the subtype of HIV-1 that has become aim of coordinating the University’s
retroviruses, so named because of the the globally distributed human pathogen commitment to tackling global health
‘reverse’ way they reproduce themselves. that causes AIDS. Understanding how challenges imposed by infectious
Once a retrovirus has infected a cell, its pathogens have been kept under check diseases of animals and humans. Many
RNA genome is replicated, or ‘reverse in certain species, and how these species internationally recognised research
transcribed’, into DNA. This becomes have undergone selection and developed groups spread across departments and
integrated into the genome of the resistance, will provide important insight disciplines in Cambridge are working in
infected cell, so that it is copied every into new treatments for other threatened this area. By building capacity in
time the infected cell divides. Such species. infectious disease research and teaching,
integration explains why some viral and by attracting new research
infections such as HIV (the cause of AIDS) partnerships and funding, the goal of
or human T-lymphotrophic virus (the
Understanding the good, the CID is to amplify Cambridge’s impact on
cause of T-cell leukaemia or bad and the ugly human and animal health worldwide.
encephalopathies) are, in essence, Linked to this area, a major effort in the In the spirit of commemorating
persistent life-long infections. lab is focused on identifying new types of Darwin, CID has this year chosen the
Sequencing of the human genome has virus that have adapted so well to their theme ‘Infectious Diseases and Evolution’
revealed that retroviral integration has in hosts that they have gone unnoticed for a meeting to be held on 22–23
fact been ongoing for millions of years. under normal circumstances in healthy October 2009; further details will be
Human genomes, and those of other individuals. These viral infections may posted on the CID website.
mammals, are littered with retrovirus-like circulate within the human population
elements as remnants of virus integration. without causing overt disease yet, For more information, please
Fortunately, most have become defective subclinically, influence our daily health visit the CID website
and are no longer replication competent, and wellbeing; moreover, if associated (www.infectiousdisease.cam.ac.uk)
and are often considered by others as with other infections, such as those that
junk DNA. Professor Heeney considers cause hepatitis, these viruses may
them as ‘viral fossils’. accelerate or alter the course of the
disease. One project in the lab is
Evolution of resistance investigating a highly contagious
As a consequence of the thousands of norovirus (a variant of the virus that
years of battle between host and virus, causes winter vomiting disease in
our bodies have evolved many humans) that is completely asymptomatic
mechanisms to block or cripple those in normal healthy mice but only rears its
viruses that have the potential to head and causes disease when the
threaten the survival of species. mouse genome loses particular genes
Understanding these processes and how responsible for natural antiviral responses.
hosts have evolved such viral defences It is hoped that studies such as these will
may provide new insight into the co- shed light on where disease outbreaks
evolution of species and viruses. come from and how they persist.
One area of research in Professor Professor Jonathan Heeney
Heeney’s lab is the study of the recent Developing vaccines
ancestor of HIV, the simian The expectation is that lessons can be
immunodeficiency virus (SIV). Of learned from understanding features of For more information, please contact
particular interest is the elucidation of the long and intimate evolutionary Professor Jonathan Heeney
how SIV evolved from being a virus of history shared by mammals and (jlh66@cam.ac.uk) at the Department of
non-human primates to being a new retroviruses. Much of the knowledge of Veterinary Medicine. Professor Heeney’s
pathogen of humans, and how previous protective host responses to viral research is funded by the US National
animal hosts developed mechanisms of infection that is being uncovered in Institutes of Health and the Bill &
disease resistance. Humans show a Professor Heeney’s group is being Melinda Gates Foundation; a number of
spectrum of disease progression translated into the development of students and fellows in his laboratory are
following HIV infection, with some vaccines to combat complex persistent supported by the Wellcome Trust.

Issue 9 | Summer 2009 | 17


SPOTLIGHT ON DARWIN

PROFESSOR RAYMOND E. GOLDSTEIN


Stirring
tails of
evolution Volvox: a multicellular alga with thousands of biflagellated cells
on its surface; the smaller spheres are daughter colonies

Researchers in One of the truly remarkable recent cilia (also termed flagella), for instance,
discoveries in biology is a connection increases fluid flow across the organism,
Cambridge are improving the exchange of nutrients and
between the swimming of microscopic
studying how green algae and the process that waste products with the environment.
the generation determines that your heart is on the left. Increasingly, these biological issues are also
The link is provided by cilia, the microscopic being seen as physical ones, involving
of fluid flow by
appendages whose beating propels algae many different disciplines – from fluid
organisms may through their fluid environment and which dynamics to mechanics and signal
have played a also set up circulating flows in a developing processing. Professor Raymond E. Goldstein’s
embryo that establish the left–right research group in the Department of
role in the
asymmetry. Cilia play an important role in Applied Mathematics and Theoretical
evolution of many aspects of life, from the reproductive Physics combines theoretical and
biological system, to the kidneys, eyes and the experimental studies of biological
complexity. respiratory tract. complexity to investigate these kinds of
The ubiquity of cilia speaks to the issues in evolutionary biology.
importance of fluid mechanics in biology,
but they may also have a role in one of the The importance of being
most fundamental issues in evolutionary spherical
biology: the origin of evolutionary Volvox is something of a model organism in
transitions from single-cell organisms to evolutionary biology. Only half a millimetre
multicellular ones. in diameter, it has thousands of biflagellated
A general (but by no means universal) cells on the surface of an extracellular
rule of nature is that larger organisms are matrix, and daughter colonies that grow up
more complex, when measured by the inside. It is one of the evolutionarily
number of distinct types of cell present. This advanced members of a lineage of species
undoubtedly reflects the fitness advantage that starts at the most simple end of the
conferred by a division of labour among spectrum, with the single-cell organism
specialised cells over a situation in which all Chlamydomonas. The cells of the smaller
cells are totipotent (able to do all the species are all totipotent, whereas from
functions of life). The evolution of beating Volvox onwards nature has decided to

18 | Issue 9 | Summer 2009


SPOTLIGHT ON DARWIN

specialise into two distinct cell types – An emerging hypothesis is that the
flagellated somatic cells on the surface spiralling motion actually enhances the
which perform photosynthesis and beat phototactic fidelity. Because these
their flagella, and interior non-flagellated multicellular organisms have no central
germ cells that are the sole reproductive nervous system, evolution has apparently
cells. endowed each somatic cell with just the
Volvox’s specialisation represents one of right ‘program’ of response to light to enable
the most basic divisions of labour in biology directed motion. The response is a transient
and the question of why nature has chosen one in which cells on the dark side of the
the size of Volvox as the scale for colony beat faster than those on the light
differentiation is a central one for research in side. This arrangement is possible only if the
this area. Because these organisms are response time of the flagella is comparable
spherical it is also easier to develop realistic to the rotational period, a kind of ‘fine-
mathematical theories. Examining these tuning’ that is well known in biology.
species as a function of their size, we Professor Goldstein’s group has recently
recognise that their ability to take up developed a novel apparatus to track the
nutrients by diffusion increases only with phototactic trajectories of organisms from
their radius; whereas, with all their metabolic Chlamydomonas to Volvox as they respond
tissue on the surface, their needs will grow to changes in directional light signals and
with the surface area. Thus, beyond a critical is using high-speed imaging to study the
radius, Volvox cannot live by diffusion alone. flagellar response under those same
The research in Professor Goldstein’s group conditions.
has suggested that the fluid flows driven by
flagella act to enhance nutrient uptake in a Synchronised swimming
way that removes this bottleneck. The These questions have led the group back
principle is akin to the chilling effect of wind to the simplest of these organisms,
on the skin, where airflow past the skin’s Chlamydomonas, to understand how its
surface enhances heat transport two flagella synchronise. Using state-of-
perpendicularly, from the body to air. the-art high-speed imaging methods,
The connection to germ–soma postdoctoral researchers Dr Marco Polin
differentiation comes from the ‘flagellation and Dr Idan Tuval and PhD student Knut
constraint’, the fact that the protein building Drescher have discovered that the beating
blocks of flagella are also used in structures of the two flagella is actually quite
that pull chromosomes apart during cell complicated: the cell regulates the flagellar
division. For these organisms, nature does beating so that they switch back and forth
not allow ‘multi-tasking’ and flagellar between being so close in frequency as to
beating ceases during cell division. Hence, become synchronised by the fluid flows
sequestering the reproductive processes on they create, to being far enough apart that
the interior without compromising the they beat approximately independently.
external fluid flow may be nature’s way of Careful study of the statistics of these
preserving the metabolic activity of the alternations has been used to determine
larger organisms. the strength of the fluid dynamical
coupling that drives synchronisation,
Steering without a cox providing the first quantitative test of
If Volvox relies on fluid flow, a natural emerging theories of this phenomenon.
question is how the flagellar movements at Moreover, the alternation between
the multicellular level are coordinated. synchrony and asynchrony leads to
Lacking any cytoplasmic connections swimming trajectories that are
between its thousands of surface somatic combinations of straight paths and
cells, Volvox functions ‘like a ship with a sharp turns, producing a ‘random walk’. Professor
thousand oarsmen and no cox’. It displays This kind of behaviour is well known in
accurate phototaxis (swimming towards the bacteria, which have very different kinds Raymond E. Goldstein
light) as each cell is programmed to of flagella, but was not known for these
modulate the beating of its flagella in organisms. The full implications are still to
response to the signal received by its eye be worked out, but they probably For more information, please contact the
spot, a primitive photoreceptor. Because represent a strategy for searching the space author Professor Raymond E. Goldstein
each colony spins about a fixed body axis as around them. Indeed, the transition from (reg53@cam.ac.uk) at the Department of
it swims, each of the thousands of eyespots this erratic search mechanism at the scale of Applied Mathematics and Theoretical
is constantly receiving a signal modulated in a single cell to the more stately cruising of a Physics. Professor Goldstein is the
time as they face towards and away from Volvox colony provides yet another example Schlumberger Professor of Complex
the light; the flagellar beating is of the way in which size is related to Physical Systems and is funded by the
correspondingly regulated up and down complexity. Biotechnology and Biological Sciences
periodically. It turns out that many simple Understanding the origins of biological Research Council (BBSRC), Engineering
(and even advanced) organisms swim in complexity is a goal that involves merging and Physical Sciences Research Council
spiralling paths that produce such periodic techniques and concepts from many (EPSRC), Medical Research Council (MRC),
signals, and therefore a quantitative different disciplines and, just as biology is Leverhulme Trust and European
understanding of how accurate homing increasingly incorporating maths, so too Commission Marie Curie Programme.
motion works under these constraints has are mathematics and physics rising to the Videos related to this article can be found
broad implications. challenges presented by biology. at www.youtube.com/Goldsteinlab

Issue 9 | Summer 2009 | 19


PREVIEW

REPRODUCED BY PERMISSION OF THE SYNDICS OF CAMBRIDGE UNIVERSITY LIBRARY


Miranda Gill
traces shifting
19th-century
perceptions of
eccentricity, from
its association
with the
intoxicating lure
of modernity and
fashion to the
murky underworld
of circus freaks
and half-mad
visionaries.

Rethinking eccentricity
Since the 18th century, English culture has I chose 19th-century Paris as the focus of Why were the French so ambivalent
been associated (both by the English the study precisely because its culture was towards eccentricity? The French Revolution
themselves and by continental observers) significantly different from English culture. in 1789 inaugurated a century of
with unusual tolerance towards The modern concept of eccentricity had unprecedented social and political instability,
unconventional and peculiar individuals. crystallised in 18th-century England, a culture generating a strong desire in the French elite
Even today, eccentricity is often seen as an increasingly interested in poetic and to create social cohesion and order. An
obligatory component of the English psychological originality. Pre-Revolutionary orderly society entailed the suppression of
national character. The eccentric is typically French culture, by contrast, was markedly any challenges to social norms. At the same
portrayed as a harmless and amiable figure, hostile to both originality and individual time, however, the influence of Romanticism
someone who provides others with a difference. It asserted that elegance was led to an increasing desire for individual
pleasant diversion from the tedium of timeless, upheld rigid ideals of good taste freedom and fulfilment, whilst the
everyday life. and decorum, and stressed the need for bourgeoisie had strong faith in social and
But how historically representative are social conformism. It was precisely the initial intellectual progress. The latter tendencies
these received ideas of eccentricity? This strength of French resistance to the values of inevitably led to many norms and traditions
question has formed the basis of my research eccentricity, I suggest, which make its being called into question, and 19th-century
and the subject of my recent book, which reception after 1830 so revealing of tensions Parisian culture was at the forefront of
seeks to investigate more sceptically the in French cultural identity. attempts to probe the fragile boundaries
cultural and ideological functions of between conformism and eccentricity. Three
eccentricity. Ambivalent emotions cultural fields in which this is most evident
My research starts from two sets of Breaking with convention aroused highly are fashion, bohemia and science.
assumptions: first, that eccentricity is neither ambivalent responses in 19th-century
timeless nor universal; second, that it is by no Parisian readers, writers and spectators. Followers of fashion
means always harmless and absurd. Eccentricity was debated in a wide range of Eccentricity in Paris of the 1830s was linked
Eccentricity is, instead, a historically relative sources, including etiquette manuals, fashion to flamboyant new fashions and the
and context-dependent term, which must be magazines, newspapers, novels, plays, seductions of commodity culture. The values
situated within the broader histories of political pamphlets, and scientific and of fashion, including novelty and bizarreness,
individualism and deviance. Eccentricity psychiatric treatises. On the one hand, the were diametrically at odds with the
often elicited violent and conflicting scandal of ‘standing out’ evoked the traditional values of French politeness and
responses, and was associated with aspirations of the bourgeoisie, namely its etiquette. Eccentric styles epitomised the
potentially disturbing figures such as the dreams of freedom, creativity and intoxicating dangers of modernity, and were
insane, social marginals, human ‘monsters’ individuality. On the other, it symbolised the championed by a range of unconventional
and the tempestuous Romantic genius. deepest anxieties of this class, the threat of figures, including male and female dandies
Beliefs about eccentricity varied widely madness, monstrosity and sin. Eccentricity and the aristocratic figure of the lionne or
across European national traditions, and were was therefore simultaneously desired and lioness. The lionne rejected the fragility and
underpinned by complex assumptions about feared, incorporated into and rejected from hysteria associated with respectable women,
gender and class. bourgeois identity. and engaged instead in energetic ‘masculine’

20 | Issue 9 | Summer 2009


PREVIEW

Eccentricity in 19th-century France was often linked with flamboyant new fashions, as seen here for the Eccentricity and the Cultural Imagination in
central figure of the female ‘lionne’; image from Edmond Texier’s Tableau de Paris, 1852, Vol. 1 (8000.a.30) Nineteenth-Century Paris by Dr Miranda Gill is
published by Oxford University Press

pursuits such as horseriding and smoking. But symbolic resistance to a culture which defined
increasingly, such eccentricity was linked to normality, virtue and health in increasingly
demi-mondaines and courtesans, who, it was restrictive and unimaginative terms.
feared, were corrupting the morality and
health of the social elite. A contemporary debate
In charting the history of eccentricity, one
Bohemian culture conclusion I arrived at was that beliefs about
After Napoleon III’s coup d’état of 1851, the precisely how much individuals are permitted
social position of the writer and artist became to diverge from social norms differ
more problematic. Eccentricity was associated considerably between cultures in response to
with the artists, social marginals and urban very specific socio-historical factors. Gender
poor who inhabited ‘the unknown Paris’. This appears to be central to the imagination of
murky underworld fascinated bourgeois deviance in this period since what was deeply
observers as much as it horrified them. Writers eccentric for women was often considered
and journalists documented their ambivalent quite normal for men, and vice versa.
responses to exhibitions of human freaks in Ultimately, the experience of ambivalence is
the fairground and to the half-mad visionaries inseparable from European modernity:
of bohemian street culture. They were uneasily eccentricity represents one compelling set of
aware that they too failed to conform to values (novelty, freedom, individuality) which
bourgeois norms and that some eccentrics clashed significantly with other, equally
might be unrecognised geniuses. compelling values (stability, order,
community). In many ways, this type of clash
Scientific theory is central to debates in contemporary moral
The popularisation of medical theories of and political philosophy about the plurality of
national decline after 1851 led to increasing values and goods.
moral panic. Eccentricity was interpreted as a The interdisciplinary focus of the project
symptom of insanity and concealed deformity, continues to develop, as it traces the
and eccentrics were often portrayed as a migration of concepts and metaphors
Dr Miranda Gill
dangerous social menace which psychiatrists between literature, popular culture and
and legislators struggled to contain. Despite science. Continuing to emphasise the ways in
this, many writers, including Gérard de Nerval, which social and psychological categories are For more information, please contact
Jules-Amédée Barbey d’Aurevilly, Charles implicitly shaped by values and norms, my the author Dr Miranda Gill
Baudelaire and Jules Vallès, championed research is now focusing on a cultural history (mfg24@cam.ac.uk) at the
‘pathological’ and ‘monstrous’ forms of of paranoia and suspicion in French Department of French, in the Faculty
eccentricity. Their writing constitutes an act of modernity. of Modern and Medieval Languages.

Issue 9 | Summer 2009 | 21


KNOWLEDGE TRANSFER

©ISTOCKPHOTO.COM/LES CUNLIFFE
What is
knowledge
transfer?
As we launch a new section
in Research Horizons to
highlight examples of
knowledge transfer at the
University, we begin by
asking: what is it and how
does it happen?
Knowledge transfer (KT) is a term used to way of exchanging knowledge on a shorter Licensing: Licensing the right to use specific
encompass a very broad range of activities term basis. One of the longest standing research outputs (IP such as patentable ideas) is
to support mutually beneficial schemes is Knowledge Transfer Partnerships an important KT mechanism. Information on IP
collaborations between universities, (www.ktponline.org.uk), funded by the that is available for licensing is accessible
businesses and the public sector. It’s all Technology Strategy Board and supported by through various websites, but successful
about the transfer of tangible and most UK Research Councils. licensing arrangements are long-term
intellectual property, expertise, learning Publication and events: Knowledge is relationships often leading to research
and skills between academia and the non- transferred through publication of research collaborations and individual contacts. Licensing
academic community. It’s also well outputs, and through events and networking. In is a key area of activity for Cambridge Enterprise,
recognised by government and funders as Cambridge, events can vary from Horizon with about 50 new commercial agreements
an important return on the UK’s investment Seminars (which provide a first look at new closed annually and a portfolio of over 450
in academic research, one that provides a findings and developments at the University active licence agreements.
significant driving force for enhancing and are organised by Research Services Division) New businesses: Bringing research outputs to
economic growth and societal wellbeing. to the Corporate Gateway (offering a bespoke market through the formation of a new
For academics, KT can be a way of gaining programme of customised meetings with business can be particularly appropriate when
new perspectives on possible directions leading University researchers and new the application represents a ‘disruption’ to the
and approaches for research. This two-way technology companies in Cambridge). current market or sector, or where there isn’t any
exchange element of KT is at the heart of Collaborative research: This is a powerful obvious external partner to whom the idea
successful and sustainable collaboration. means of creating opportunities for innovative could be licensed. New businesses based on
Academics are often asked to consider knowledge exchange. In Cambridge, examples research outputs often build their business
the potential audiences, impact and include the Cambridge Integrated Knowledge models around collaboration with larger,
applications for their work, and increasingly Centre (CIKC), which brings together University established firms to access expertise, equipment
there are opportunities to apply for grants research, industry secondments, business and routes to market. Cambridge has a well-
specifically with non-academic acumen and manufacturing expertise to help developed ecosystem for supporting this,
collaborative partners. In response, those with exploitable concepts to achieve including student business-plan programmes,
Research Councils UK (RCUK) has recently commercial success in photonics and area angel networks and access to capital
launched the RCUK Knowledge Transfer electronics; and the Institute for Manufacturing through Cambridge Enterprise Seed Funds (see:
(IfM), which creates new ideas and approaches www.enterprisenetwork.group.cam.ac.uk).
Portal as a single point of access for those
to modern industrial practice – from
interested in KT schemes and activities
understanding markets and technologies,
(www.rcuk.ac.uk/innovation/ktportal).
through product and process design, to KT is a contact sport
operations, distribution and related services. Three key factors seem to underpin successful
Making the most of research As a whole, the University typically engages in KT. First, it’s not a ‘zero cost’ activity; it takes effort
Discussion around KT often focuses on the 650 research agreements, worth £22 million, and time to make it work. Second, it is a ‘contact
formation of spin-out business, or the with industry annually. sport’; it works best when people meet to
licensing of intellectual property (IP), based Consultancy: The provision of domain- exchange ideas, sometimes serendipitiously,
on the outputs of university science and specific expert advice and training to external and spot new opportunities. Third, it needs
technology-related research. Although clients by university staff can be a very effective practical, timely and active support at an
these are vitally important areas, KT actually KT mechanism – it can provide a platform for institutional level – within companies and
encompasses a much broader range of the exchange of both explicit and more tacit universities – encouraging a culture of open
activities and is not limited to the science knowledge, and a window on areas of possible access and open innovation.
and technology disciplines. In terms of collaboration. Support for consultancy is one
activities, KT can be split into six types: service offered by Cambridge Enterprise Ltd For more information, please contact the
People: When students graduate and (www.enterprise.cam.ac.uk). The IfM also author Dr Tim Minshall (thwm100@eng.
join the workforce, they bring with them disseminates its research outputs through cam.ac.uk) at the Centre for Technology
new knowledge and are effectively helping consultancy services provided by the University- Management in the IfM (www.ifm.eng.cam.
to ‘regenerate the gene pool’ of industry. owned company IfM Education and ac.uk). Dr Minshall has extensive experience
The temporary placement of students and Consultancy Services Ltd. Together, Cambridge of supporting industry–academic
graduates in companies or in the public or Enterprise and IfM provide consultancy support collaboration, technology transfer and open
voluntary sectors can be a more directed to more than 200 companies annually. innovation.

22 | Issue 9 | Summer 2009


FEATURES

DR KEITH MARTIN
Glaucoma: the silent
thief of sight
New treatments for glaucoma are a key priority in
Stem cells (shown here in green) transplanted
vision research. Advances in stem cell technology in into the eye must negotiate certain barriers to
Cambridge are helping to make this dream a reality. survival, migration and integration

Glaucoma is the leading cause of irreversible interest, and Cambridge researchers are To catch a thief
blindness worldwide. Dubbed the ‘silent leading the way in this field. Glaucoma Replacing damaged RGCs will be a
thief’ because of the insidious manner by involves the progressive death of retinal challenging procedure, involving the
which many patients have already suffered ganglion cells (RGCs) – the eye cells that establishment of complex connections with
significant visual loss before they are carry visual information from the eye to the the retina and brain, and requiring a much
diagnosed, glaucoma affects more than brain via the optic nerve – and it’s hoped better understanding of the inhibitory
60 million people, over 6 million of whom that stem cells can be used to protect environment of the mammalian retina. Not
are blind in both eyes. Currently, the only surviving RGCs and to replace those that are only will Dr Martin’s research help to
treatment that can slow the progression of too damaged to function. This is the goal of understand the barriers that prevent stem
disease is to reduce the eye pressure Dr Keith Martin and colleagues at the Centre cell transplantation, but it will also help to
medically or surgically. However, for some for Brain Repair, who have pioneered a new catch the thief in action – by understanding
patients, visual deterioration continues technique to study the barriers that reduce the pathogenic sequence of eye pressure
unabated even with this intervention. Once the survival, migration and integration of and neurodegenerative events as they
vision is lost, it cannot be restored. stem cells transplanted into the retina. occur.
Glaucoma has been highlighted as a The model involves the use of a very
priority eye disease by the World Health specific set of tissue culture conditions that
Organization’s global initiative to eliminate enable tissue from a rat’s eye to be kept alive
avoidable blindness by the year 2020. This much longer in culture, remaining healthy,
recognises the urgent need to find new maintaining its layered architecture and
treatments that can prevent blindness in the retaining the ability to make new proteins.
most severely affected patients and to The tissue responds to stem cell
restore some useful vision to those blinded transplantation in a similar way to that of
by the disease. the eyes of living animals, enabling the
researchers to transplant stem cells onto
Towards stem cell therapy living tissue in a controlled environment and
The potential use of stem cell therapy in the to test treatments to improve integration of
treatment of glaucoma has aroused great the transplanted cells.

Prestigious prize for replacing animal use Dr Keith Martin


Dr Keith Martin and PhD student Thomas Johnson were recently awarded a major
prize by the National Centre for the Replacement, Refinement and Reduction of
Animals in Research (NC3Rs) for the UK research that has done most over the
preceding two years to replace, refine and reduce animal experiments. Until recently, For more information, please contact
injecting cells into the eyes of anaesthetised animals has been the only way to the author Dr Keith Martin
understand the barriers that prevent the integration of transplanted stem cells into (krgm2@cam.ac.uk) at the Centre for
the retina. The £10,000 GlaxoSmithKline (GSK)-sponsored prize recognises the fact that Brain Repair in the Department of
this new retinal culture system allows much of this work to be carried out without the Clinical Neurosciences. This research was
need for animal procedures. published recently in Investigative
Ophthalmology and Visual Science and
For more information about NC3Rs, please visit www.nc3rs.org.uk was funded by a GSK Clinical Fellowship
to Dr Martin.

Issue 9 | Summer 2009 | 23


FEATURES

Cambridge Conservation Initiative:


transforming international biodiversity conservation
‘Conserving global biodiversity
presents us with a major challenge
in the 21st century, requiring
interdisciplinary collaboration
across research, policy, practice and
education. By creating CCI, the
Cambridge conservation community
has taken a unique step towards
tackling this challenge in a most
exciting and innovative way.’
Professor Alison Richard, Vice-Chancellor

The Cambridge Conservation Initiative (CCI) management has appeared over the past economic consequences of losing what is
is a new and pioneering partnership formed 25 years, at local, national and international left of wild nature; the conclusion –
by the University of Cambridge and leading scales. Public understanding of nature, its that converting remaining habitat patches
conservation organisations. Its aim is to beauty, value and rapid demise, has grown typically results in a net economic loss to
create an international centre of enormously. Such public interest and society as a whole – was presented by
interdisciplinary collaboration and outreach concern has resulted in an increasing RSPB and BirdLife International at the
that will transform conservation research, number of organisations that carry out a World Summit on Sustainable Development
policy and practice for the benefit of wide range of practical conservation as well as to the UK Prime Minister. Professor
biodiversity and humanity. programmes. Yet, despite such progress, Bill Sutherland, also in Zoology, has been
extinctions continue and habitat loss remains bringing together a diverse array of policy
Scale of the challenge a major threat to life on earth and human makers to identify new problems facing
Biological diversity – the myriad of genes, wellbeing. If progress is to be sustained, there biodiversity and key unanswered questions;
species and ecosystems – underpins the life- needs to be a new approach that will bridge in parallel, he has been working with
support systems for our planet and for the the gulf between research, policy, practice conservation practitioners across the world
survival of life on earth. Clean air, pure water, and training in biodiversity conservation. to document evidence-based solutions.
foods, medicines and natural materials are all This challenge is at the heart of CCI. Although CCI is still in its infancy,
produced or maintained by the plants, some innovative integrated approaches
animals and microbes that make up Pioneering change have already been created. In a Shared
biodiversity and the ‘ecosystem services’ CCI will carry out innovative research across Challenges Programme between CCI
they provide. disciplines and forge entrepreneurial members, collaborative projects have
However, an increasing body of research, collaborations that generate cross-cutting started on, for example: assessing the
including significant contributions from policy analysis and evidence-based practical value of biodiversity in climate change
Cambridge, shows that humans are advice, drawing on and integrating adaptation; identifying the impacts of
destroying species, habitats and ecosystems biological, social, economic and political biofuel production on biodiversity; using
more rapidly and more extensively than ever science. Through its members (see panel), remote sensing to measure and evaluate
before. Extinction rates of species are CCI will harness a unique and diverse biodiversity; and developing mechanisms
estimated to be more than 1000 times international network across business, for biodiversity offsetting (similar to carbon
higher than would occur through natural government and intergovernmental offsetting).
evolution and, if climate change continues at agencies, civil society and academia. Thanks to the generous support of
current levels, a third of all living species are Research has already benefitted from Arcadia, the charitable foundation of
likely to be committed to extinction by 2050. the types of collaborations it is anticipated Lisbet Rausing and Peter Baldwin, CCI has
In a global assessment of ecosystem services that CCI will foster on a larger scale. For just appointed its first Executive Director,
it was recently concluded that 60% are being example, Professor Bill Adams in the Dr Mike Rands. The Executive Director’s
seriously depleted or used unsustainably. It Department of Geography has been role is to accelerate activities, foster new
has become clear that such widespread working with the International Union for collaborations and partnerships, and drive
impacts on biodiversity have profound Conservation of Nature (IUCN) and a wide forward plans for a purpose-built
negative implications for human welfare. international network on a project to environmentally sound centre for
Set against this gloomy picture for global develop the next generation of thinking biodiversity. Created around a new
biodiversity is some more encouraging news. about sustainable development, recently University of Cambridge Institute for
Our detailed knowledge of the status and published by IUCN as a book entitled Biodiversity Conservation, the centre will
distribution of species and ecosystems, and Transition to Sustainability: Towards a also host founder partners and other
of the threats they face, is growing rapidly. Humane and Diverse World. Professor organisations, providing a vibrant
An impressive range of government Andrew Balmford and colleagues in the intellectual environment and organisational
legislation and policy for biodiversity Department of Zoology have worked with hub with operational economies of scale
conservation and wider environmental RSPB to coordinate a major review of the and shared facilities.

24 | Issue 9 | Summer 2009


FEATURES

Founder members of CCI

BirdLife International is a strategic global


partnership of conservation organisations in
over 100 countries, working to conserve birds,
their habitats and global biodiversity, and to
promote sustainability in the use of natural
resources (www.birdlife.org).

(TBA); JAMIE GRUNDY/TBA); MNS/BIRDLIFE


LEFT TO RIGHT: TROPICAL BIOLOGY ASSOCIATION
British Trust for Ornithology is an
independent scientific research trust,
investigating the populations, movements
and ecology of wild birds in the British Isles
(www.bto.org).

Cambridge Conservation Forum is a


network that links the diverse Cambridge-
based community of conservation practitioners
and researchers working at local, national
and international levels
(www.cambridgeconservationforum.org.uk).

Fauna & Flora International acts to conserve


Cambridge already has the largest
threatened species and ecosystems worldwide,
cluster of conservation expertise in the
delivering global and regional programmes of
world but the new centre will deliver a step
conservation and community projects
change in our ability to attract researchers,
(www.fauna-flora.org).
engage with the policy sector and the
business community, and deliver training
International Union for Conservation of
and outreach. CCI’s goal is to harness for
Nature (IUCN) is the world’s largest professional
biodiversity conservation Cambridge’s
global conservation network, and supports
exceptional power to shape thinking of
scientific research, manages field projects and
mainstream decision makers and to exert
unites conservationists to develop and
decisive influence in the global arena.
implement policy, laws and best practice
(www.iucn.org).

RSPB is the largest wildlife conservation


organisation in Europe, and works to secure the
conservation of biodiversity – especially wild
birds and their habitats – through research,
education, habitat management and advocacy
(www.rspb.org.uk).

TRAFFIC is a global wildlife trade monitoring


network which works to ensure that trade in
wild plants and animals is not a threat to the
conservation of nature (www.traffic.org).

Tropical Biology Association works in


Professor Bill Adams (back left), partnership with African institutions to build
Professor Bill Sutherland expertise in biodiversity conservation and
research (www.tropical-biology.org).
(back right), Professor Andrew
Balmford (left) and UNEP World Conservation Monitoring
Dr Mike Rands Centre is a branch of the United Nations
that undertakes synthesis, analysis and
dissemination of global biodiversity knowledge
For more information, please contact for conventions, countries, organisations
the authors Dr Mike Rands and companies (www.unep-wcmc.org).
(mr494@cam.ac.uk; CCI Executive
Director, Judge Business School), University of Cambridge core Departments
Professor Bill Adams (wa12@cam.ac.uk; involved in CCI are Zoology, Plant Sciences,
Department of Geography); Professor Geography, Land Economy, Judge Business
Andrew Balmford (apb12@cam.ac.uk; School and the Cambridge Programme for
Department of Zoology) and Professor Bill Sustainability Leadership (CPSL; formerly the
Sutherland (w.sutherland@zoo.cam.ac.uk; Cambridge Programme for Industry).
Department of Zoology) or visit
www.conservation.cam.ac.uk

Issue 9 | Summer 2009 | 25


FEATURES

Some remarkable organisms


are able to withstand almost
complete desiccation. How
they survive is providing
Cambridge researchers with
new ideas for biostable
therapeutics.

Drying without dying

Resurrection might seem an unpromising is completely shut down and only resumes – so that large cultures can be derived
topic for scientific research, but there are when water is present once more. from single individuals. This results in a
well-characterised organisms, including When dry, anhydrobiotic creatures can population of genetically identical animals
some animals and plants, that are able to tolerate an astonishing range of (a clone), and clones of many thousands of
enter, and recover from, an apparently environmental stresses, including extremes rotifers can be produced in the laboratory.
lifeless state. They can remain in suspended of temperature and pressure: from –270˚C, Other small animals are also able to
animation for long periods, perhaps for which is close to absolute zero, to +150˚C, undergo drying without dying, including
decades, but then resume their normal lives, well above the boiling point of water; and some species of nematode worms, normally
apparently unaffected. from the vacuum of space to a thousand found in soil or on leaf litter, and thus
atmospheres in a pressure chamber. After frequently subjected to drought; these
Life without water this mistreatment, they can still be revived animals have also been adapted to life in
Dr Alan Tunnacliffe, Reader in Biotechnology by rehydration without ill effect. It is the laboratory.
at the Department of Chemical Engineering perhaps not surprising that one proposal
and Biotechnology, and his research team for how life originated on Earth is that How do they do that?
are working on one means by which nature anhydrobiotic organisms were carried The ready availability of large numbers of
is able to cheat death. This is called through space from another planet. bdelloid rotifers and nematodes allows
anhydrobiosis, derived from the Greek for biochemical and genetic studies to be
‘life without water’, and occurs in organisms Animal magic carried out that should eventually unravel
that are able to withstand almost complete One type of animal that can perform the the mystery of anhydrobiosis. Initial work
desiccation. anhydrobiosis trick is the bdelloid rotifer, a has focused on simple sugars that are able
The ability to survive extreme harmless, normally aquatic, creature that is to protect biological molecules against
dehydration is remarkable for a living less than a millimetre in size. Bdelloids are desiccation damage. Many of the plants
organism since it is widely accepted that life ubiquitous in freshwater environments that undergo anhydrobiosis, the aptly
is water, and usually there is a limit beyond throughout the world, particularly in named resurrection plants, contain large
which further loss of water is fatal. Humans temporary pools where the ability to survive quantities of sucrose – the same sugar used
are typical in this respect, as water desiccation offers a selective advantage. to sweeten tea or coffee. Researchers have
comprises approximately two-thirds of our Dr Tunnacliffe’s group is studying two discovered that another related sugar,
body weight, and loss of just 15% of this is different species of rotifer, one collected trehalose, seems to be involved in
life threatening if not treated rapidly. from a bird bath in his back garden, and the protecting some animals and
Anhydrobiotic organisms, by contrast, are second from a billabong in Australia. They microorganisms from dehydration stress.
able to survive loss of most of their body can be grown easily in the laboratory, Both sugars are thought to protect drying
water, which is reduced to 10% or less of feeding happily on bacteria or other small organisms by forming organic glasses inside
body weight in the dried state. When dry, organic particles. They also reproduce cells and around sensitive molecules,
no signs of life can be detected: metabolism asexually – no males have ever been found trapping them in space and time.

26 | Issue 9 | Summer 2009


FEATURES

DR CLAUDIA PINELLI
Water-loving (hydrophilic) proteins protect
organisms such as this nematode during
desiccation by stabilising proteins within their
cells (nematode ovary shown: blue, location
of DNA; green, location of hydrophilic protein)

Water-loving proteins potency if not kept cool. This limits their shelf life; rehydration could be performed
Other similar molecular magic tricks are sure effectiveness in many developing countries, just prior to use. Although this scenario
to be discovered since bdelloid rotifers are where refrigeration is not always available. currently sounds like science fiction, the
now known from the group’s research to be The difficulty in maintaining a ‘cold chain’ humble, harmless rotifer is teaching us that
from point of manufacture of a medicine to it might not be too far away.
unable to produce trehalose. One class of
molecules that offers an alternative to the its point of use has been highlighted by the
‘sugar solution’ to the anhydrobiosis World Health Organization as a major hurdle
problem is that of water-loving (hydrophilic) in bringing some treatments, regarded as
routine in the developed world, to less-
proteins. Recent research in the Tunnacliffe
developed regions. A technology that
lab has discovered such proteins in bdelloid
allows medicines to be dried, conferring on
rotifers and indeed many other desiccation-
them the remarkable biostability of
tolerant organisms, including plants and
anhydrobiosis, could be of enormous
microorganisms.
benefit, and this approach is already being
A major problem for proteins in a drying
used by some vaccine manufacturers.
cell is loss of three-dimensional (3D)
Dr Tunnacliffe has recently received
structure, resulting in the proteins clumping
funding from the European Research
together to form aggregates, which can be
Council (ERC) to take this idea a step further.
toxic to the cell. Hydrophilic proteins are
Understanding how a rotifer or nematode
unusual in that they lack a defined 3D
survives drying should allow the application
structure and seem able to protect other
of what has been learned in these
proteins around them, either in the test
organisms to a mammalian cell. Such
tube or a living cell, from aggregation.
driable-but-viable cells could have
Further work has shown that hydrophilic
applications in tissue engineering where
proteins might also offer protection to cell Dr Alan Tunnacliffe
new cell-based therapeutics are envisaged.
membranes during desiccation, and help to
At the moment, for example, producing an
prevent cells becoming leaky under stress. artificial pancreas capable of secreting
insulin in response to high blood sugar
Biostable medicines levels as a treatment for diabetics requires
An understanding of the drying-without- the handling of fragile live cells. If these cells For more information, please
dying trick is not only of scientific interest could be dried in a viable form, the contact the author Dr Alan
but could also have important medical accompanying biostability should make Tunnacliffe (at10004@cam.ac.uk)
applications. For example, many drugs and such artificial organs more like off-the-shelf at the Department of Chemical
vaccines are fragile molecules that lose their medicines, easy to store and with a long Engineering and Biotechnology.

Issue 9 | Summer 2009 | 27


FEATURES

DR CARL WATKINS/ALL SAINTS CHURCH, NORTH ST, YORK


Tracing popular
beliefs from
medieval to early
modern times is
highlighting the
durability of
debates about
the dead.

From beyond
the grave
‘Death personified’; detail from a late-medieval window in All Saints Church, North St, York,
depicting signs from the Book of Revelation of the end of the world

It has become something of a newspaper this spiritual ‘middling sort’ was solved by the learned observers can be as telling as the
commonplace that men and women of medieval church when it gave purgatory tales they set down. Although usually
the modern West share an unusual sharp definition as the place where traces of sceptical and detached, they sometimes slip
aversion to death. Where once it was sin might be cleansed in fire before the soul in autobiographical comment on their own
subject to intimate ritual among entered paradise. hopes and fears about death and the dead,
neighbours, and kin gathered around the Although, in the mid-16th century, and sometimes betray how stories in which
domestic deathbed, it is now hidden, Protestant reformers abolished purgatory as they are immersed then infiltrated and
hospitalised and a ‘modern taboo’. Even unscriptural, niggling questions remained shaped their own beliefs.
less has been said about the dead about the fate of the majority. Could they What this research is beginning to
themselves and their changing place in really be consigned to hell’s fires? Still queasy suggest is that many beliefs about the
the imagination. Yet, as medieval historian about this, some Victorian churchmen dead and debates about their fate were
Dr Carl Watkins is finding, an exploration reinvented the concept: worried by a loving perennial ones, transcending some of the
of cultural change in attitudes to death God who still sent some into eternal fires, great cultural and religious changes wrought
over a long span provides a fascinating they ‘emptied’ hell entirely by arguing that in the medieval and early modern worlds.
means of understanding how ordinary universal salvation was possible. This even led
people relate to the dead and conceive of the former Prime Minister William Gladstone
their fate. to fear an epidemic of social disorder if the
Dr Watkins’ research requires deterrent of hell was, in effect, abolished.
consideration of obvious otherworldly But did the saved not become
places – heaven, hell, the cleansing fires complacent about their blissful condition?
of purgatory, the idea of judgement at From indications in the New Testament that
the end of time – but also the less the saved and damned might see each
travelled byways. How have people other’s fate, an idea was spun out in lurid
related to their ancestors? How have they medieval visions in which the elect were
imagined the ancient dead whose traces briefly shown hell to redouble their own joys.
(from saints’ bones to megalithic Even as late as the 19th century, preachers
monuments) lie in their midst? Through were still drawing on the same idea, although
tracing attitudes from the middle ages to modified for refined Victorian sensibilities:
the dawn of modernity, recorded in smoke from hell’s fires would waft discreetly
parish records and church archives, the through heaven to remind its inhabitants of
research is showing that debates about their blessed estate.
the dead and patterns of thinking about Dr Carl Watkins
their place have proved durable down Back from the dead
the centuries. Popular beliefs about ghosts are perhaps the
most tenacious aspects of ‘death culture’. Of
Defining purgatory course, deciphering these beliefs entails
One recurring theme is the fate of those taking folklore seriously as a historical source. For more information, please
deemed too sin-stained for immediate Folk stories were lovingly accumulated by contact the author Dr Carl Watkins
transit to heaven but not wicked enough collectors from the second half of the 17th (csw14@cam.ac.uk) at the Faculty
for hell. The perennial problem posed by century onwards, and the reactions of these of History.

28 | Issue 9 | Summer 2009


FEATURES

Tales of Vikings
and Irish, clerics
and kings
Máire Ní Mhaonaigh is unravelling legends
within gems of literature surviving from
medieval Ireland.
Nestling in the westernmost corner of augmented tale,
Western Europe (‘next stop America’), Ireland depicting him as
is often seen as part of a Celtic fringe. Yet, in conqueror of
medieval times, it formed a major intellectual irrepressible Vikings, a
hub, and the wealth of documents that have veritable saviour of his
survived from the period in vellum own people. It was in
manuscripts cast light not just on Ireland’s his descendants’
own sophisticated civilisation but on interest to peddle this
developments in Europe as well. positive image; having
Unlike clerical counterparts in other a glorious ancestor
places, Irish monks wrote in Latin but also meant that they too
composed copiously in their own language might be deemed
from the 6th and 7th centuries AD onwards, great. In the 12th
making Old Irish the first vernacular to have century, Brian’s
achieved literary status. Among their various great-grandson,
works are secular narratives dealing with Muirchertach, who
themes as diverse as kingship and kinship, proudly bore his
heroism and love. These serve as the most forefather’s name
insightful of social commentary, illuminating Ua Briain
how society functioned and depicting (‘descendant of
people’s most pressing concerns. Brian’) as a
surname,
Medieval spin doctors commissioned
Literature is not history, of course, and a literary
unravelling the layers of complex texts is biography of his
often a forensic affair. With recent funding family hero.
from the Alexander von Humboldt Cogadh Gáedhel re Gallaibh
Foundation, Dr Máire Ní Mhaonaigh’s (The Viking–Irish War) served as a reminder
Opening page of the
research is concerned with disentangling to potential opponents of what text Cogadh Gáedhel re Gallaibh from the Book
earlier texts copied over centuries and Uí Briain (O’Briens) were made. of Leinster (Trinity College Dublin, MS 1339, p. 309a)

REPRODUCED BY PERMISSION OF THE BOARD OF TRINITY COLLEGE DUBLIN


surviving in manuscripts of the 12th century
and later. The reproduction of texts provided Church and ‘State’
ample opportunity for enterprising scribes – Muirchertach was a powerful patron of
the spin doctors of their own time – to put church reform and his clerical companions
their own subjective slant on events, bolstered his political ambition by producing
producing skilful propaganda glorifying their useful documents like Cogadh in return.
own masters and putting their own issues Such constructive cooperation had for
centre stage. Discerning these biases enables centuries ensured that various facets of the
us to evaluate their writing and use it to life of Ireland’s ruling elite were recorded
understand the machinations of life in the either as ‘facts’ or in literary form, providing
authors’ own day. an unrivalled picture of the upper echelons
of a society which constituted part of the
Mythologising history European norm.
In the case of stories concerning real figures, This fruitful fusion was not to continue,
historical sources can provide a measuring and the large 12th-century codex, the Book Dr Máire Ní Mhaonaigh
stick to determine the degree of of Leinster, in which the Cogadh is preserved,
mythologisation that has taken place. One may have been one of the last such For more information, please contact
particularly powerful ruler, Brian Boru, who compilations to have been produced in an the author Dr Máire Ní Mhaonaigh
died at a ripe old age in battle in 1014, ecclesiastical embrace. Nonetheless, the (mnm21@cam.ac.uk) at the Department
emerges as a wily politician and skilful 600 years or more of intense intellectual of Anglo-Saxon, Norse and Celtic.
military campaigner from a reading of involvement between clerics and royalty Dr Ní Mhaonaigh’s book Brian Boru:
contemporary chronicles. Literary works in in Ireland offers an unparalleled glimpse of Ireland’s Greatest King? was published
Irish and in Norse tell a different, much this remarkable time. by Tempus in 2007.

Issue 9 | Summer 2009 | 29


FEATURES

New understanding of the physics of clouds is helping to


model both climate change and the impact of volcanic
eruptions and wild fires.

Unclouding uncertainty in climate modelling


Our climate is the net result of many from a few hundred metres to a few weather situation (that is, at a specific time
complex processes that transfer and kilometres in scale. and in a specific grid cell of the model). The
redistribute the Sun’s energy through the Clouds are extremely important for system is based on the solution of a set of
Earth’s atmosphere, oceans, land and realistic model simulations since they are the Lotka–Volterra-type differential equations,
ecosystems. Because these processes are ultimate drivers of the global atmospheric also known as predator–prey equations from
basically nonlinear, their interaction circulation. Water vapour carrying latent heat their use for describing biological systems:
unavoidably leads to chaotic variability of is transported upwards by convection or in the clouds (the ‘predators’) have a limited
climate and weather on various time scales, large weather systems (fronts), where it cools ‘food’ supply of convective available
and we rely on climate models to achieve and eventually forms clouds; precipitation as potential energy (the ‘prey’, this being the
some sense of the dynamics of weather and rain then releases the latent heat. This amount of energy available for convection),
to predict future climate. Currently, one of convection is strongest in the tropics, where for which clouds of different characteristics
the greatest sources of uncertainty in the vapour-laden trade winds from both (size, depth) are competing.
climate modelling is posed by clouds, which hemispheres converge, forming deep, rain- By capturing the variations of cloud
are not resolved individually but instead are producing convective clouds. It is here that spectra in a statistical sense, cloud
averaged. Professor Hans-F. Graf’s group, the atmosphere receives the energy that microphysics can be treated explicitly and it
based in the Department of Geography and drives the whole global circulation. is now possible to determine in-cloud
part of the Centre for Atmospheric Science Clouds are also highly relevant to vertical velocities, interactions with aerosols,
(see panel), is developing a new technique changes in climate that result from human convective transport, rainfall intensity and
for global and regional climate modelling activities. Changes in land use affect radiation effects.
that moves beyond treating clouds as ‘one- reflectivity and evaporation from soil and
size-fits-all’. vegetation, and hence the transfer of energy Forest fires and volcanic ash
to the atmosphere; fossil fuel burning and The team has been focusing on a variety of
Cloudy issues industrial processes increase aerosols that different types of cloud – most notably the
Climate models consist of a set of coupled reflect sunlight or absorb solar and terrestrial effects of smoke on clouds and precipitation
differential equations based on first radiation. Both land use change and aerosols over Amazonia and Indonesia. Initially
principles of physics that are solved have an effect on cloudiness and funded by the European Union, the project
numerically by dividing the planet into a precipitation at both the local and the is now contributing to the Danum-OP3
three-dimensional grid. Available computer micro scale. consortium that spans eight UK institutions
power dictates that each grid is typically and is funded by the Natural Environment
100–300 km in size. Unfortunately, any Predator–prey Research Council (NERC) to investigate the
processes that are smaller cannot be The innovative approach adopted by effects of the replacement of pristine rain
explicitly resolved and have to be Professor Graf’s group has been to simulate forest by oil palm plantations in northern
‘parameterised’ as an average. Among these the behaviour and microphysics of Borneo. Recently published data show how
are clouds: the standard approach has been convective clouds using a concept more the smoke from the extreme peat fires that
to create an average cloud that has to mimic familiar within population dynamics: they plagued Indonesia and surrounding
all the effects of the cloud spectrum of treat clouds as individuals that compete for countries for months during 1997–8
different-sized convective clouds. Of course, food. reduced the amounts of rainfall in the area.
in nature, the cloud spectrum is highly This technique allows the separation of The reduced rainfall, in turn, increased the
variable depending on the actual weather individual clouds from a larger set of clouds residence time of the smoke particles in the
situation and location, and clouds can range that can potentially evolve under a given atmosphere, thus aggravating the situation.

30 | Issue 9 | Summer 2009


FEATURES

PROFESSOR HANS-F. GRAF


ATHAM can be used to predict whether ice is
formed within a volcanic plume; here,
rainwater (dark blue), cloud water (light
blue) and ice (grey) are modelled in the
images to the left; and particles of ash (large,
dark brown; coarse, light brown; fine, grey)
are modelled in the images to the right

A second focus has been the ‘In many climate models...


development and application of the Active Centre for Atmospheric
Tracer High-resolution Atmospheric Model
cloud feedbacks remain the
Science
(ATHAM). The development of this high- largest source of uncertainty.’
resolving model started immediately after Report by the
The Centre for Atmospheric Science is
the eruption of the Mount Pinatubo volcano Intergovernmental Panel
one of the premier groups in the UK for
on the Philippines in the early 1990s, when on Climate Change, 2007
atmospheric studies. It encompasses
Professor Graf was at the Max Planck
research in three departments:
Institute for Meteorology in Hamburg. The
model simulates convective plumes at
resolutions down to a few tens of metres • Department of Chemistry:
and was initially used to understand the Numerical modelling of
dynamic, microphysical and chemical tropospheric and stratospheric
processes within volcanic eruption plumes. chemistry/climate (Professor John
An important question was whether these Pyle), instruments and
vigorous convective systems could measurements (Professor Rod
effectively transport magmatic halogen Jones), measurements of gas
compounds into the stratosphere, where kinetics (Dr Tony Cox) and studies
they could harm the ozone layer. The model of atmospheric aerosols (Dr Markus
has also been used successfully to simulate Kalberer).
big fire storms induced by wild fires, and the • Department of Applied
results have proved that pollutants from Mathematics and Theoretical
these fires are introduced into the lower Physics: Investigation of
stratosphere. fundamental aspects of
Further applications of ATHAM are under atmospheric dynamics and
current investigation by Dr Michael Herzog physical processes (Professors Peter
in Professor Graf’s group, particularly in Haynes and Michael McIntyre).
relation to aviation safety. Fine silicate ash • Department of Geography:
from volcanic eruptions poses a severe risk Research on convection, modelling
for aeroplanes. Although ash clouds can be plumes and stratospheric dynamics
detected by satellite monitoring, they are (Professor Hans-F. Graf and Dr
often obscured by ice particles residing Michael Herzog).
above the ash, and ATHAM can be used to
predict whether ice is formed within a The Centre is co-directed by Professor
volcanic plume. Further plans with ATHAM John Pyle and Professor Peter Haynes.
are ongoing with support from a joint Professor Hans-F. Graf
Chinese–German research project that will For more information, please
study the effects on weather and climate in For more information, please contact contact Professor Peter Haynes
Southeast Asia resulting from the dramatic the author Professor Hans-F. Graf (P.H.Haynes@damtp.cam.ac.uk)
changes of land use and ecology on the (hans.graf@geog.cam.ac.uk) at the or visit www.atm.ch.cam.ac.uk
Tibetan plateau during the past 60 years. Department of Geography.

Issue 9 | Summer 2009 | 31


IN FOCUS

Cancer Research UK is the Linking the laboratory


world’s leading independent
charity dedicated to cancer
to the cancer clinic
research, spending around The Cambridge Research
£300 million a year on world- Institute (CRI) is driving the
class research to beat cancer. development of new
In November 2008, the approaches for the early
charity launched a five-year detection, prevention and
plan to focus research on treatment of cancer.
core areas of science that will The CRI is the most recent of five
have the greatest impact on comprehensive research institutes core
reducing cancer deaths, with funded by Cancer Research UK. Housed in the
magnificent, custom-built, £50 million
an emphasis on cancers that
Li Ka Shing Centre, the Institute is located
have poor survival rates. on the Cambridge Biomedical Campus. With
more than 250 scientists in 19 research
groups, it is one of the largest cancer research
facilities in Europe.
Officially opened in early 2007, the
Institute is already internationally acclaimed
for the high calibre of its research. ‘We’ve been
able to hit the ground running,’ said Director
Professor Sir Bruce Ponder, ‘and this is largely
because the funding we receive from Cancer
Research UK means that we can guarantee
salary, staff, laboratory space and core facilities,
Formed in 2002 by the amalgamation of the two largest UK cancer charities – so the individuals we recruit have minimal
the Cancer Research Campaign and the Imperial Cancer Research Fund – Cancer interruption to research as they set up their
Research UK continues a century-long history of funding cancer research. Its annual laboratories.’
research budget funds the work of over 4500 scientists, doctors and nurses across Group leaders have been carefully chosen
the UK, including research at a number of specialised institutes and centres. The most with complementary research interests in
recent of the core-funded institutes, the Cambridge Research Institute (CRI; see mind – roughly half are engaged in the study
panel), is a flagship research enterprise located on the Cambridge Biomedical of fundamental aspects of cancer cell biology
Campus. and half in technology-based or clinical-based
In 2007–8, Cancer Research UK spent just over £31.5 million on laboratory research research; over a third are clinically qualified.
and clinical trials in Cambridge; around £17.5 million of this annual research spend Many of the group leaders hold joint
provided core funding for the CRI. appointments with the Hospital, the University
Funding by Cancer Research UK covers all aspects of cancer research, from (seven within the Department of Oncology) or
understanding fundamental cancer cell biology to large epidemiology studies across research institutes on the Cambridge
entire populations of people, as well as training the next generation of research Biomedical Campus. CRI’s location on the
scientists. Some examples in Cambridge include: Campus offers outstanding opportunities for
• Several programme grants and a significant element of core funding to the such interaction because of its proximity to
the Cambridge University Hospitals NHS
Wellcome Trust/Cancer Research UK Gurdon Institute, where research is
Foundation Trust (Addenbrooke’s), the
helping to uncover what goes wrong when a cell becomes cancerous, by
University School of Clinical Medicine and its
investigating the processes that ensure that cells function correctly during normal
associated institutes, and the Medical Research
development.
Council (MRC) Laboratory of Molecular Biology
• Funding the two UK arms of the largest study of diet and health ever undertaken –
and four MRC Units.
the European Prospective Investigation into Cancer and Nutrition (EPIC) –
All of these interactions are crucial to the
a long-term study of more than half a million people in 10 European countries. success of the Institute, as Professor Ponder
The University of Cambridge manages the Norfolk arm of EPIC, which has recruited (who is also Head of the Department of
more than 30,000 people. Oncology) explained: ‘It’s no good creating a
• Scientists at the Strangeways Research Laboratory and Department of freestanding institute that’s got a ‘moat’
Oncology, who are searching for genes that increase cancer risk and investigating around it – we work hard to be fully
how the effects of the genes combine with lifestyle factors to cause cancer. connected with Cambridge’s research
• Cancer Research UK PhD Training Programme in Medicinal Chemistry environment and the Hospital, both to expand
(see panel), a collaborative initiative that brings together research groups with our intellectual base and to ensure that
expertise in synthesis chemistry, pharmacology, biochemistry and cancer biology laboratory advances are translated into
to train synthesis chemists to PhD level. benefits to cancer patients as quickly as
possible. The joint appointments really make
For more information, please visit www.cancerresearchuk.org these interactions work, and is another reason
we’ve been able to get off the ground so
quickly.’

32 | Issue 9 | Summer 2009


IN FOCUS

KEITH HEPPELL
Training chemists to
identify cancer targets
Rigorous interdisciplinarity lies at
the heart of a graduate programme
to train the next generation of
synthetic chemists.
The Cancer Research UK PhD Training
Programme in Medicinal Chemistry has been in
operation in Cambridge since 2006. To date, 12
PhD students have embarked on training that
exposes them to over 30 world-class research
groups from 11 departments with facilities in
synthesis chemistry, pharmacology,
biochemistry and cancer biology. A further eight
will join the Programme over the next two years.
In the first nine months of the Programme,
first-year students are brought up to speed in
cancer-focused research by a combination of
PhD-level laboratory rotations, taught courses
and hot topics. As they move into their second
year, students settle into their chosen three-year
PhD project with a primary chemistry supervisor
and other supervisors from the biology sectors.
Dr Rebecca Myers, who coordinates the
Programme from the Department of Chemistry,
described how it broadens the mind: ‘The new
students are incredibly enthusiastic about the
Recent research highlights include the primed,’ said Professor Ponder, who chairs the lab rotations and the challenges they present.
discovery of precisely why some women CCC Steering Committee. ‘We’re now moving They often arrive with well-defined ideas on
develop resistance to the breast cancer drug into a new phase with the CCC in which what aspect of cancer-related medicinal
tamoxifen. Dr Jason Carroll, who leads the we’re identifying collaborative research chemistry they would ultimately like to research.
Nuclear Receptor Transcription Laboratory, themes and developing the organisational Yet this typically transforms as the students
explained: ‘We knew that women developed structures that will help to drive them come to see the breadth of cancer research
resistance to tamoxifen but previously our forward.’ ongoing in the University and how chemistry
understanding of why this occurred could be What happens next at the CRI? Research can interface with it.’
compared with trying to fix a broken car at the Institute will bed down and integrated Programme Director Professor Shankar
without knowing how the engine worked. programmes will continue to develop. The Balasubramanian (Herchel Smith Professor of
Now we understand how all the engine parts top floor of the Institute is being kept in Medicinal Chemistry in the School of Clinical
operate and we can try to think about ways reserve. ‘In a few years’ time,’ said Professor Medicine and the Department of Chemistry)
to make repairs.’ Ponder, ‘the science at the Institute will have explained the importance of this interdisciplinary
Professor Kevin Brindle, who leads the matured to the point where we will be able training: ‘Through providing practical and
Molecular Imaging Laboratory, has to make intelligent choices about what we intellectual experience of cancer biology to early
developed a way of scanning the body using need to add. My colleagues and I believe that career synthetic chemists, the Programme is
magnetic resonance imaging to a level of we have something really special at the CRI, putting in place the tools that will help them
precision that could be used to detect cancer and I’m delighted to say that the funders and identify appropriate cancer targets for drugs
earlier, as well as for the evaluation and local community share our enthusiasm.’ of the future.’
design of novel cancer therapies. Dr David
SHAUN NEAVES

Tuveson has set up a facility in the clinic for


treating patients with pancreatic cancer and
a matching experimental system in the
laboratory to test and refine potential new
treatments.
To strengthen cancer research
collaborations across Cambridge, a virtual
community has arisen with the CRI as its
nucleus. The Cambridge Cancer Centre (CCC)
forges links between cancer researchers in
the biological and physical sciences,
clinicians and local biotech companies. Professor Sir Bruce Ponder Symposium day for the current students
‘CCC creates an environment in which basic
research can have a practical application, For more information, please visit For more information, please contact
collaborative projects can be developed, and www.cambridgecancer.org.uk Dr Rebecca Myers (rmm32@cam.ac.uk) or visit
new interdisciplinary work can be pump- and www.cancer.cam.ac.uk www-medchem.ch.cam.ac.uk

Issue 9 | Summer 2009 | 33


INSIDE OUT

DR DAVID STERN
Professor David MacKay
Internationally known for his work on information theory,
machine learning and novel forms of communication,
Professor David MacKay has devoted much of his time
recently to public teaching about energy. His well-received
book Sustainable Energy – Without the Hot Air was published
in December 2008.

Whether he’s developing a means of understand just how big the energy
communicating in any language with any challenge is,’ he explained, ‘I hope to
muscle, debunking energy myths by promote constructive conversations
establishing how the numbers add up, or about energy, instead of the perpetual
analysing the fractal Fibonacci spirals of a Punch and Judy show of anti-wind and
cauliflower and the internal workings of anti-nuclear. We need a plan that adds up.’
his Psion organiser, David MacKay,
Professor of Natural Philosophy at the What would others be surprised to
Department of Physics Cavendish learn about you?
Laboratory, has an extraordinary diversity I love and cherish my 15-year-old Psion 3A
of interests. Personal Digital Assistant. I have at least five
For the past decade, one of his of the same model and when they break
principal research projects has been down I take them apart and carry out
Dasher, a machine-learning system that surgery to fix them. I’ve also twice played in
allows individuals to write without a the World Ultimate Frisbee Championships
keyboard. The user creates sentences by (we lost) and the temperature of my home is
navigating through letters in a continually usually 13˚C in winter, although perhaps
unfurling alphabetical display, effectively this isn’t surprising about me, as turning
navigating in the library that contains ‘all down your central-heating thermostat is
conceivable books’. Navigation can be one of the best energy-saving things you
controlled by any muscular movement, can do.
even breathing or just gazing, while the
software consults an archive of training Have you ever had a Eureka moment?
text to predict what the user might write My Eureka moment was realising that you
next. Dasher is available as open-source could take an existing data compression
software free to anyone wishing to use it. idea called arithmetic coding, turn it on its
David MacKay’s research group is also head by visualising it on a computer screen,
developing Opengazer, free software that and achieve the goal of helping someone to
can use the images from an ordinary communicate using a single muscle.
webcam to estimate the direction of your
gaze. Funding has recently been granted What’s the best piece of advice you’ve What is your favourite research tool?
from the European Union as part of ever been given? It has to be Google. For all my recent work
AEGIS, a worldwide consortium led by ‘Friends come and go, enemies only on energy I’ve learned so much useful and
Sun Microsystems to build accessibility accumulate.’ I’m not sure how good I’ve authoritative stuff in a fast and efficient way
support into the next generation of rich been at following this advice but I’m hoping using this search engine.
internet applications and mobile devices. that I’m improving with age.
Combined with Dasher, the aim of What will the future look like in
Opengazer is literally to allow users to What motivates you to go to work 2050?
write with their eyes. each day? One possible future is that we’ll have lots
Sustainable Energy – Without the Hot My main motivation is to understand of green, energy-efficient systems. But
Air, David MacKay’s contribution to the things. The reason I love this job is I’m free to another possible future is a world of
energy debate, was driven, as he work on anything I want to. I can choose energy wars over the diminishing fossil
explained, ‘by outrage at inaccurate fun things, often serendipitously. Dasher fuel resources. Realistically, I don’t think
statements made about sustainable resulted from a random conversation on a we can rely on inventions still to come;
energy, together with embarrassment bus with a colleague who was mocking the the responsible thing is to imagine that
that I didn’t know the numbers myself.’ size of the keyboard on my Psion; we today’s technology is what we’ve got to
The resulting book provides a straight- brainstormed on how we could come up work with. If we go for strong energy
talking, honest look at the figures: Can we with a communication solution that doesn’t efficiency measures and a really big
live on renewables? What are the assume writing is about pushing buttons or building programme of green energy
reasonable options for producing energy? using a pen. By the end of the bus journey, systems then it will be possible to
How can we make a big difference to we’d named Dasher (for its effortless speed) carry on a lifestyle similar to today’s.
reducing our demand? ‘By helping people and I’d started writing the first prototype. It’s possible but it’s not going to be easy.

34 | Issue 9 | Summer 2009


FORTHCOMING EVENTS

FORTHCOMING EVENTS: SAVE THE DATES!


5–10 July 2009
The Darwin 2009 Festival
Cambridge
The Darwin 2009 Festival is an anthology of the science, society, literature, history,
philosophy, theology, art and music arising from the writings, life and times of
Charles Darwin. Speakers include Richard Dawkins, Steve Jones, Ruth Padel, Ian
McEwan and Dame Gillian Beer. As part of the wider Festival, Cambridge's museums,
galleries and other venues will be running programmes of music, drama, film and
tours, which will explore the past, present and future of the natural world in the
light of evolutionary understanding. Please visit www.darwin2009.cam.ac.uk for full
details of events and to book tickets.

Other Darwin-related exhibitions in Cambridge this year include:

Beetles, Finches and Barnacles


University Museum of Zoology
A permanent exhibition on how Darwin’s experiences in zoology shaped his ideas on
evolution and natural selection, using many of the specimens he collected throughout
his life, especially during the Beagle voyage.
www.zoo.cam.ac.uk/museum

Carnivores: plants that bite back and other Darwin discoveries


Cambridge University Botanic Garden
A permanent display exploring the diversity of trap mechanisms, from the springs of
the Venus Fly Trap to the sticky glue of the Sundews, and examining some of Darwin’s
breakthrough experiments.
www.botanic.cam.ac.uk

Endless Forms: Charles Darwin, natural science and the visual arts
The Fitzwilliam Museum, 16 June–4 October 2009
A major exhibition exploring the influence of Darwin’s discoveries on 19th-century
artists and their work, featuring nearly 200 exhibits from over 100 institutions
worldwide.
www.darwinendlessforms.org

Darwin the Geologist


Sedgwick Museum, from 7 July 2009
A permanent exhibition telling the story of the rock specimens that Darwin collected
on the Beagle voyage and how he analysed and used them in his early scientific work
as a geologist.
www.sedgwickmuseum.org/exhibits/darwin.html

A Voyage Round the World: Charles Darwin and the Beagle collections in the
University of Cambridge
Cambridge University Library, 7 July–23 December 2009
An exploration of the Beagle voyage as a pivotal experience in Darwin’s life, using
Darwin’s manuscripts and specimens from the University’s collections.
www.lib.cam.ac.uk
©ISTOCKPHOTO.COM/NICOLAS LORAN

1 October 2009
Horizon Seminar ‘Energy & Environment’
Centre for Mathematical Sciences, Cambridge
There is an imperative need for a shift in society’s approach to climate change and
energy if the risk of serious social, environmental or economic harm is to be limited.
This Horizon Seminar will highlight the need for the key infrastructure components of
energy, water, waste and mobility to work together, as well as the importance of
moving from short-term decision making to long-term sustainable growth. Horizon
Seminars are organised by Research Services Division. Please visit
www.rsd.cam.ac.uk/events/horizon/ or email horizon@rsd.cam.ac.uk for further
information.

Issue 9 | Summer 2009 | 35


THE BACK PAGE

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