Professional Documents
Culture Documents
The research was carried out in the Imammain Kadhimain of the patients were classified into 2 age groups per
Teaching Hospital and the College of Medicine-Al- decade; the first group (>50 years) include (63.0%) of the
Nahrain University's microbiological laboratories. About patients, and the second group (< 50 years) was 37%
5 ml of whole blood was drawn from each patient. The [Figure 1].
blood sample was divided into two parts; the first of which
was placed in EDTA tubes (2 ml) for molecular detection
and the second of which was placed in BacT/ALERT
bottles (3 ml).
According to “BacT/ALERT 3D Microbial Identification
System/Biomerieux” protocol the samples were cultured
to detect the fungemia via conventional methods (13).
The Genomic DNA was separated from blood sample
according to the protocol of the kit “ReliaPrep™ Blood
gDNA Miniprep System kit, Promega”. Thereafter,
molecular method (Real-Time PCR) was used for the
detection of fungal DNA in the blood sample via the Mic
qPCR Cycler, (Bio Molecular System, Australia) (14).
Ethical consent
The Al-Nahrain University, College of Medicine's
Ethical Committee gave its approval to this study on
November 17, 2020 (No. 20201080). The research
protocol did not interfere with any medical
recommendations or prescriptions. Informed consent
was obtained from the patient’s relatives or the patient
himself when he was still conscious with keeping the
patients` records confidential in all stages of the study.
This work has been carried out in accordance with
The Code of Ethics of the World Medical Association
(Declaration of Helsinki) for studies involving A. B.
humans. Figure 1: (A) Sex distribution of patients with renal
failure on hemodialysis, (B) Age distribution of
Statistical analysis patients with renal failure on hemodialysis.
The collected data were coded, processed and analyzed
using the SPSS (Statistical Package for Social Sciences) Laboratory Diagnosis of Fungi Infection by
version 20 for Windows® (IBM SPSS Inc, Chicago, IL, Conventional and Molecular Methods:
USA). Data were tested for normal distribution using the Regarding blood culturing via BacT/ALERT culture
Shapiro Walk test. Qualitative data were represented as bottle, it was found that 3 (16%) Candida utilis (2),
frequencies and relative percentages. Chi square test (χ2) Cryptococcus spp. (1), of the cases were positive, while
and Fisher's exact test were used to calculate difference 16 (84%) were negative [Table 1, Figures 2 and 3]. Then
between two or more groups of qualitative variables. when it comes to the molecular method (Multiplex Real
Quantitative data were expressed as mean and standard Time PCR) only 2 (11%) out of the 19 patient were
deviation (SD). Independent samples t-test was used to diagnosed with Rhizopus oryzae [Table 1, Figure 4].
compare between two independent groups of quantitative
variables. P value <0.05 was considered significant. Table 1: Results of the conventional and molecular
methods used for the detection of fungal infection
RESULTS among patients on hemodialysis.
Age and Sex Distribution of Hemodialysis Patients Patients Conventional Molecular
with Double Lumen Catheter: methods method
A total of 19 patients with renal failure who are receiving (BacT/ALERT) (MRTPCR)
hemodialysis attended Imamein Kadhimein Teaching A.S cryptococcus spp.
Hospital and Al-Karama Teaching Hospital in which 11 F.M Candida utilis
(58%) were females and 8 (42%) were males. Regarding A.S.J Candida utilis Rhizopus oryzae
age of these patients, it was ranging between 13 and 70 A.A Rhizopus oryzae
years, with mean of 47.32 (SD 19.37). The total number
696
https://ejhm.journals.ekb.eg/
Figure 2: (A) Candida utilis on SDA medium at 27 °C. (B) Microscopic observation (400) x, stained with
lactophenol cotton blue. (C) C. utilis colonies appears pale pink on HiCROME candida differential agar medium
at 35 °C.
Figure 3: (A) Cryptococcus spp. on SDA medium at 27 °C. (B) Microscopic observation (400) x stained with
lactophenol cotton blue. (C) Cryptococcus spp. stained smear by india ink (1000) x.
A. B.
Figure 4: (A) Amplification plots at the end of M-RT PCR run for the positive and negative controls Mucor spp. and
R.oryaze. (B) Amplification plots at the end of M-RT PCR run for the ITS1, ITS2 gene as positive results, R.oryzae
and Mucor spp. positive controls and negative control.
697
https://ejhm.journals.ekb.eg/
Table 3: Fungal Infection in Relation with Cause of renal failure among Hemodialysis Patients with Double Lumen
Catheter.
Variable Infection Total P value Value 95% Confidence
Interval
Positive Negative Lower Upper
Cause of Chronic disease 4 11 15 0.352 NS 0.733 0.540 0.995
renal % 26.67% 73.33%
failure Congenital 0 4 4
% 0.0% 100%
Table 4: Fungal Infection in Relation with hemodialysis session hour among Hemodialysis Patients with Double
Lumen Catheter.
Variable Infection Total P value Value 95% Confidence
Interval
Yes No Lower Upper
Hemodialysis >3 sessions 4 6 10 0.033 * 1.667 1.005 2.765
session hr. % 40% 60%
3 sessions 0 9 9
% 0.0% 100%
% 21.43% 78.57%
698
https://ejhm.journals.ekb.eg/
Table 5: Fungal Infection in Relation with blood transfusion last year among Hemodialysis Patients with Double
Lumen Catheter.
Variable infection Total P value Value 95% Confidence
Interval
Positive Negative Lower Upper
Blood transfusion Yes 1 4 5 0.728 NS 0.917 0.073 11.577
last year % 20% 80%
No 3 11 14
% 21.43% 78.57%
of them were diagnosed with fungemia (24). The circulating DNA in serum: retrospective analysis of 44 cases
discrepancies among these results may be due to the collected through the French Surveillance Network of
number of samples included in each study, racial factor Invasive Fungal Infections (RESSIF). CMI., 22(9):810.
differences. 13. Beyda N, Amadio J, Rodriguez J et al. (2018): In Vitro
Evaluation of BacT/Alert FA Blood Culture Bottles and
T2Candida Assay for Detection of Candida in the Presence
Conflict of interest: The authors declare no conflict of of Antifungals. Journal of Clinical Microbiology,
interest. 56(8):e00471
Sources of funding: This research did not receive any 14. Bernal-Martínez L, Buitrago M, Castelli M et al. (2013):
specific grant from funding agencies in the public, Development of a single tube multiplex real-time PCR to
commercial, or not-for-profit sectors. detect the most clinically relevant Mucormycetes species.
Clinical Microbiology and Infection, 19(1):E1–E7.
REFERENCES 15. Saad T (1999): Bacteremia associated with tunneled, cuffed
1. Brown G, Denning D, Gow N et al. (2012): Human Fungal hemodialysis catheters. American Journal of Kidney
Infections. doi:10.1126/scitranslmed.3004404. Diseases, 34(6):1114-24.
2. Grothe C, Da S, De C et al. (2010): Incidence of blood 16. Ali M, Das B, Kumar S (2019): Catheter related infection
stream infection among patients on hemodialysis by central in hemodialysis patients with double lumen catheter. The
venous catheter. Rev Lat Am Enfermagem, 18(1):73-80. Professional Medical Journal, 26(08):1278-82.
3. Tokars J, Frank M, Alter M et al. (2002): National 17. Parameswaran R, Sherchan J, Varma D et al. (2010):
Surveillance of Dialysis‐Associated Diseases in the United Intravascular catheter-related infections in an Indian tertiary
States. Seminars in Dialysis, 15(3):162-71. care hospital. The Journal of Infection in Developing
4. Saad T (1999): Bacteremia associated with tunnelled, cuffed Countries, 5(06):452-8.
hemodialysis catheters. Am I Kidney Dis., 34(6):1114-24. 18. Fujisawa Y, Hara S, Zoshima T et al. (2020): Fulminant
5. Lackner M, Caramalho R, Lass-Flörl C (2014): Laboratory myocarditis and pulmonary cavity lesion induced by
diagnosis of mucormycosis: current status and future disseminated mucormycosis in a chronic hemodialysis
perspectives. Future Microbiol., 9(5):683-95. patient: Report of an autopsied case. Pathology International,
6. Mermel L, Farr B, Sherertz R et al. (2001): Guidelines for 70(8):557-62.
the management of intravascular catheter-related infections. 19. Loster J, Wieczorek A, Loster B (2016): Correlation
Clin Infect Dis., 32(9):1249-72. between age and gender in Candida species infections of
7. Zhang S (2013): Enhancing molecular approaches for complete denture wearers: a retrospective analysis. Clin
diagnosis of fungal infections. Future Microbiol., 8:1599- Interv Aging, 21(11):1707-14.
611. 20. Singh G, Pitoyo C, Aditianingsih D et al. (2016): Risk
8. Bialek R (2005): PCR based identification and discrimination factors for early invasive fungal disease in critically ill
of agents of mucormycosis and aspergillosis in paraffin wax patients. Indian J Crit Care Med., 20(11):633-9.
embedded tissue. J Clin Pathol., 58(11):1180-4. 21. Nguyen D, Arduino M, Patel P (2019): Hemodialysis-
9. Rickerts V, Just-Nübling G, Konrad F et al. (2006): Associated Infections. doi: 10.1016/B978-0-323-52978-
Diagnosis of invasive aspergillosis and mucormycosis in 5.00025-2.
immunocompromised patients by seminested PCR assay of 22. Habas E, Rayani A, Khammaj A (2012): Long-term
tissue samples. Eur J Clin Microbiol Infect Dis., 25(1):8-13. Complications of Hemodialysis. Sebha Medical Journal,
10. Baldin C, Soliman S, Jeon H et al. (2017): PCR-based 11(1):12-8.
Diagnosis of Mucormycosis Targeting Mucorales-specific 23. Marr K, Bowden R (1999): Fungal infections in patients
Genes. Open Forum Infect Dis., 4(1):S612-S612. undergoing blood and marrow transplantation. Transplant
11. Ibrahim A, Spellberg B, Walsh T et al. (2012): Infectious Disease, 1(4):237-46.
Pathogenesis of Mucormycosis. Clin Infect Dis., 54(1):S16- 24. Al Mussaed E (2018): Transfusion Therapy: an overview.
S22. Journal of Advanced Pharmacy Education & Research,
12. Millon L, Herbrecht R, Grenouillet F et al. (2016): Early 8(4):97-104.
diagnosis and monitoring of mucormycosis by detection of
700