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Lecture 5 and 6
Lecture 5 and 6
Lecture 5
Apparao Draksharapu
appud@iitk.ac.in
Recap of Lecture IV
1. Magnetism (systems with unpaired electrons)
Metalloenzymes
X. Huang, J. T. Groves,
Chem. Rev. 2018, 118, 2491.
Inspiration from nature
Photosystem II Methane Monooxygenase
− 4e−, 4H+ O2, sMMO
2H2O O2 CH4 CH3OH
BDE = 105 kcal mol-1
“OEC”
“Q”
Science 2006, 314, 821 Chem. Rev. 2018, 118, 2554 9
The Magic of Dioxygen
O2
O2-
O22-
“The dark side of molecular oxygen encompasses deleterious reactions of
species derived from O2 that can lead to damage of cellular components.
These reactive oxygen species (ROS) have historically been perceived almost
exclusively as agents of the dark side, but it has more recently become clear
that they play beneficial roles as well.” Chem. Rev. 2018, 118, 2491.
Common Ligands
Oxygen based
(O2-●, O22- & O2-)
H2O, OH-
HCO3-, CO32-,
S2-, Cl-, Br-, NO, CO, CH3-
11
Myo/Hemo-globin – Oxygen Transporter
O2
Hemoglobin
Myoglobin
Chem. Rev. 2018, 118, 2491.
Oxygen Binding to Myoglobin
• O2 binds to only available coordination site on iron atom.
• His 93 (proximal his) binds directly to iron.
Distal Histidine
• His 64 (distal his) stabilizes the O2 binding site.
Proximal Histidine
Myoglobin
Structural Changes in Myoglobin Upon O2 Binding
• Oxygen binding changes the Mb conformation
• Without oxygen bound, Fe is out of heme plane
• Oxygen binding pulls the Fe into the heme plane
• O2 binds to only available coordination site on iron atom.
• Fe pulls its His F8 ligand along with it
• This change means little to Mb, but lots to Hb!
Structural Changes in Hemoglobin Upon O2 Binding
Deoxyhemoglobin Oxyhemoglobin
.
CO binding to Mb and Hb
➢ Carbon monoxide is produced continuously in the body by degradation of the porphyrin
ligand.
➢ Under normal conditions, CO occupies approximately 1% of the heme sites in hemoglobin and
myoglobin.
➢ Although CO has a much greater affinity for a ferrous heme than
does O2 (by a factor of about 25,000), the affinity of CO for
deoxyhemoglobin is only about 200 times greater than that of O2,
which suggests that something in the protein is decreasing its
affinity for CO by a factor of about 100
O2
1 L 11.5 lakhs
Deoxy-Hc (A) and oxy-Hc (B) from Li. polyphemus shows a large
geometric change at the active site upon oxygen binding (the
Cu●●●Cu distance decreases by 1.0 Å) 18
Why Study Organometallic Chemistry?
Why Study Organometallic Chemistry?
• Fundamental Science: Understanding the nature of the interesting and useful complexes.
• Material Science: Chemical vapor deposition for depositing thin-films of metals. Complex
organometallics for advanced materials, such as organic light emitting diodes.
• Bioinorganic Chemistry: Some overlap, such as with Vit. B12, hydrogenase, carbonylase, etc.
• History
• Zeise’s Salt synthesized
in 1827 = K[Pt(C2H4)Cl3] • H2O
• Confirmed to
have H2C=CH2 as
a ligand in 1868.
Organometallic Compounds - History
• Ni(CO)4 synthesized in 1890 (Ludwig Mond of Brunner Mond & Co.)
Ferrocene
Electron Counting: The 18 Electron Rule
➢ Electron counting is an important tool to judge whether a given compound is stable or not.
➢ You are familiar with the octet rule for the second-row elements. The 18-electron rule is
analogous formulation for transition elements (with many exceptions!).
➢ For thermodynamically stable complexes, the number of ligands attached to a metal will be
such that the sum of the number of electron donated by the ligands plus the valence electrons
on the metal will be 18.
➢ Why 18? It is the maximum number of electrons that can be accommodated by One {ns}, three
{np}, and five {(n-1)d} orbitals.
➢ Structures which have less than 18 electrons are termed as “coordinatively unsaturated” (they
have room for more ligand(s))
Applicability of the 18 Electron Rule
❑For early transition metals, 18e- is often unattainable for steric reasons
• Determine the oxidation state of the transition metal center(s) and the metal
centers resulting d-electron count. To do this one must: [Ni(CO)4]
• a) Note any overall charge on the metal complex
• b) Know the charges of the ligands bound to the metal
center (ionic ligand method)
• c) know the number of electrons being donated to the metal Ni
center from each ligand (ionic ligand method)
• Add up the electron counts for the metal center and ligands.
Common Ligands and Electrons Contributed
• Electron Counting
2 electron donor
4 electron donor
6 electron donor
The allyl anion has similar attributes
[Mn2(CO)10]
Mn(0), d7 = 7 e-
Mn-Mn
bond 5 C≡O = 10 e-
Mn Mn-Mn = 1 e-
Mn
18 e-
Bridging Carbonyl Ligands
bridging • Carbonyls may form bridges between
[Co2(CO)8] carbonyls two metals, where they donate one
electron to each metal in working out the
18 electron rule.
• In [Co2(CO)8] , each Co has three terminal
CO’s, two bridging CO’s, and a Co-Co
Co Co bond:
Co(0), d9 = 9e-
Co-Co 3 CO’s = 6e-
bond 2 bridged μ-CO’s = 2e-
Co-Co bond = 1e-
18e-
Four Clˉ ligands are missing in each of the given skeletons of dimeric compounds (A), (B) and (C). Given that all of them obey the
18-electron rule and no additional metal-metal bonds are present, attach the missing Clˉ ligands on the complexes in the most
appropriate manner. (6 marks)
2 cp- + 2 Ru + 4 Cl- =0
(A)
2 x (-1) + 2 Ru + 4 x (-1) = 0
Ru(III), d5 = 5e-
1 Cp- = 6e-
Ru-Ru bond = 1e-
12e-
(C)
CHM 113M: General Inorganic Chemistry
Lecture 6
Apparao Draksharapu
appud@iitk.ac.in
Recap of Lecture V
oxy-Hc
Bonding in Metal Carbonyls
• M-CO:
➢ σ-donation strengthens M-C bond
➢ π-back donation strengthens M-C bond and weakens C≡O
M C O M C O
As back bonding would increase, we would expect the C=O bond strength to decrease
Infrared (IR) Spectroscopy and C=O Bond Strength
• IR spectra provides information about the stretching frequency of a bond. Recall that the stronger
a bond gets, the higher its stretching frequency.
• The υCO stretching frequency of the coordinated CO is very informative as to the nature of the
bonding.
• Thus, the more important the M=C=O (C=O is a double bond) canonical structure, the lower the υCO
stretching frequency as compared to the M-C≡O structure (C≡O is a triple bond): (Note: υCO for free
C≡O is 2143 cm-1).
-2 -1 0 0
[Ti(CO)6 ]2- [V(CO)6 ]- [Cr(CO)6] [Mn(CO)6]+
MeTiCl3, 8e-;
Me2NbCl3, 10e-;
WMe6, 12e-;
Pt(PCy3)2, 14e-;
[M(H2O)6]2+ (M = V, 15e-; Cr,
16e-; Mn, 17e-; Fe, 18e-),
Early Transition Middle Transition Late Transition
Metals Metals Metals CoCp2, 19e-;
16e- and sub-16e- 18e- configurations 16e- and sub-16e-
configurations are are common configurations are NiCp2, 20e-;
common common
Coordination Coordination Coordination
geometries higher geometries of 6 are geometries of 5 and
than 6 relatively common lower are common:
common d 8 = square planar
d6
The Elementary Steps in TM Catalysis
B
atco rdinatedligand
Elementary Organometallic Reactions
Nu
[M] L [M]n
+ [M] Nu+ L
oxidative coupling
ligand exchange
nucleophilic addition
[M] n+2
[M] [M] at coordinated ligand
R O
[M] [M] R (CO) insertion
transmetallation
[M] X + RM' [M] + R M' X
C
O
1. Oxidative Addition
Pd(0) is electron rich and has a nucleophilic character. This transformation often
represents the first step of a catalytic cycle and its mechanism depends on the nature o
• A reaction in which (usually) a neutral ligand adds to a metal center and in doing so
the metaloxidizes
as welltheas on typically
metal, the substrate
by 2e-. involved. An increase of 2 in the formal oxidation
The metal
• the
state of transferring
and of the
thetwo electrons from
coordination the metal
number to the incoming ligand breaks a
is observed.
bond in that ligand forming two new anionic ligands. At least one of these new anionic
ligands ends up bonded to the metal center.
A
n
[M] + A B [M] n+2
B
• Non-electrophillic: These molecules do NOT contain electronegative atoms and/or are not
good oxidizing agents. These molecules usually require the presence of an empty orbital on
the metal in order for them to pre-coordinate prior to being activated for the oxidative
addition reaction.
”
Non Electrophilic Substrates that Do Not Fragment
• Non-electrophillic “Intact”: These molecules have a double or triple bond present. One also
needs a metal center with an empty orbital (16e- or lower count) in order to pre-coordinate the
ligand before the oxidative addition occurs.
• Alkenes and alkynes are typical “intact” ligands that can perform an oxidative addition without
fragmenting apart.
metallocyclopropene
R
R R PMe3
PMe3
Me3P Pt Pt
PMe3
e Transition
Metals
-PMe3 PMe3
- and sub-16e- R
igurations are
common
oordination
metries of 5 and
Electrophilic Substrates
Electrophillic: These molecules do contain electronegative atoms and are good oxidizing agents.
They are often considered to be “reactive” substrates.
These molecules do NOT require the presence of an empty orbital (18e- is OK) on the metal center in
order to perform the oxidative addition reaction. Examples: X2 (X = Cl, Br, I), R-X, Ar-X, H-X, O2, etc.
e”
Late Transition
Metals
16e- and sub-16e-
configurations are
common
Coordination
geometries of 5 and
lower are common:
d 8 = square planar
Oxidative Addition: Electrophilic Substrates
• In the case of a starting 18e- complex (shown below) only one of the two anionic ligands
(usually the strongest binding) generated from the oxidative addition will end up coordinated
to the metal unless a separate substitution reaction occurs.
ctron “Rule”
The coupled anionic ligands then usually fall off the metal center as a neutral molecule.
e Transition
Metals
and sub-16e-
gurations are
common
ordination
etries of 5 and
are common:
square planar Both pathways occurred; reaction was slow (~ many hours)
Reductive Elimination: Effect of Ligand Dissociation
• It has been shown that reductive elimination can be promoted by a ligand dissociation
generating an unsaturated and more electron-deficient metal center.
ctron “Rule”
Ea
A catalyst is a substance that changes the rate of a
Ea
chemical reaction without itself appearing into the catalyzed
G
products.
Reactants
G
Products
• A catalyst
• Speeds up a reaction Reaction Coordinate
• Enables a reaction to proceed that otherwise does not without it
• Typically added in non-stoichiometric amounts
• Remains unchanged at the end of the reaction
• Heterogeneous catalysis: Catalyst and reactants are in the different phase (the
catalyst is usually insoluble; reaction occurs on its surface).
Homogeneous and Heterogeneous Catalysis
• Most catalytic reactions in industry use heterogeneous catalysis
Homogeneous catalysts:
Advantages generally far more selective for a single product
far more active
far more easily studied from chemical & mechanistic aspects
far more easily modified for optimizing selectivity
Disadvantages far more sensitive to permanent deactivation
far more difficult for achieving product/catalyst separations
Terminologies in Catalysis : TON and TOF
• TON: The number of moles of substrate that a mole of catalyst can convert before becoming
inactivated.
• TOF: The catalytic rate can be conveniently given in terms of the Turnover Frequency (TOF)
measured in turnovers per unit time (often per hour); the lifetime of the catalyst before
deactivation is measured in terms of total turnover number (TON).
Example: If 0.1 mole of catalyst converts 100 moles of substrates in 5 minutes (100% yield) then
Wilkinson’s catalyst
• The most commonly used catalyst is the Wilkinson’s Catalyst
• Many alkenes are hydrogenated with hydrogen at 1 atm pressure or less.to the 18-Electron “Rule”
Exceptions
• Wilkinson’s catalyst is highly sensitive to the nature of the phosphine ligand and the
alkene substrate.
• Analogous catalysts with alkyl phosphine ligands are inactive
• Highly hindered alkenes and ethylene are not hydrogenated by the catalyst
III III
18e- 18e-
Ligand Dissociation
Ligand Association
Late Transition
Metals
16e- and sub-16e-
III
configurations are III
common
Coordination
geometries of 5 and 16e- 16e-
lower are common:
d 8 = square planar III
Migratory Insertion
Alkene Coordination
18e-
Hydroformylation
• Both cobalt and rhodium complexes are used as catalysts.Exceptions to the 18-Electron “Rule”
• Alkene isomerization, alkene hydrogenation and formation of branched aldehydes are
the possible side reactions.
Ligand Dissociation
I
Reductive Elimination
18e-
III I
16e -
Early Transition Middle Transition Late Tra
18e- Metals
16e- and sub-16e-
Metals
18e- configurations
Met
16e- and
Oxidative Addition configurations are are common configura
common comm
Alkene Coordination
CoordinationCoordination
geometries higher
geometries of 6 are
Coordi
geometries
than 6 relatively common lower are
I common d 8 = squa
I
d6
18e- 18e-
Ligand Association I
Migratory Insertion Ligand Association
Migratory Insertion
18e-
Monsanto Acetic Acid Synthesis Exceptions to the 18-Electron “Rule”
• All three members of the group 9 (Co, Rh and Ir) can catalyze this reaction.
• A cobalt complex was initially used, which was replaced with the rhodium complex later on.
“Rule”
III III
18e- 18e-
If only a few monomers couple together, the short chains formed are called oligomers.
The commonly used catalyst has a tetrahydrofuran molecule occupying the fourth
coordination site of zirconium.
Ziegler-Natta Catalyst
• Karl Ziegler in 1953, discovered a catalyst based
on TiCl3 and AlCl3 for the polymerization of
ethylene.
Early Transiti
Recap of Lecture 1
1. Importance of transition metal complexes 2. Ligands and their denticity
71
Recap of Lecture II
Recap of Lecture III
1. John-Teller Distortion
2. CFT in Spinels
Normal Spinels : (AII)tet(BIII2)octO4
Z-out Z-in
Inverse Spinels : (BIII)tet(AIIBIII)octO4
oxy-Hc