Внимание!!!

Зеленым помечены те обзоры, которые есть на share-articles@mail.ru

Фиолетовым отмечены обзоры, электронные варианты которых отсутствуют в
электронном виде в интернете.

Нуклеосомы и гистоновый код

1. Wu J, Grunstein M. 2000 25 years after the nucleosome model: chromatin modifications.

Trends Biochem Sci. 25(12):619-23.

2. Luger K. 2003 Structure and dynamic behavior of nucleosomes. Curr Opin Genet Dev.
13(2):127-35.

3. Khorasanizadeh S. 2004 The nucleosome: from genomic organization to genomic regulation.

Cell. 116(2):259-72.

4. Cosgrove MS, Wolberger C. 2005. How does the histone code work? Biochem Cell Biol.
83(4):468-76.

5. Cosgrove MS, Boeke JD, Wolberger C (2004) Regulated nucleosome mobility and the
histone code. Nat Struct Mol Biol. 11(11):1037-43.

6. Strahl BD, Allis CD. 2000. The language of covalent histone modifications. Nature. Jan
6;403(6765):41-5.

7. Pusarla RH, Bhargava P. 2005 Histones in functional diversification. Core histone variants.
FEBS J. 272(20):5149-68.

8. Eberharter A, Ferreira R, Becker P. 2005 Dynamic chromatin: concerted nucleosome

remodelling and acetylation. Biol Chem. 386(8):745-51

9. Cairns BR. 2005 Chromatin remodeling complexes: strength in diversity, precision through
specialization. Curr Opin Genet Dev.15(2):185-90.

10. Eberharter A, Becker PB. 2004 ATP-dependent nucleosome remodelling: factors and
functions. J Cell Sci. 117(Pt 17):3707-11.

11. Lusser A, Kadonaga JT. 2003. Chromatin remodeling by ATP-dependent molecular

machines. Bioessays. 25(12):1192-200.

12. Eberharter A, Becker PB. 2002. Histone acetylation: a switch between repressive and
permissive chromatin. Second in review series on chromatin dynamics. EMBO Rep.
3(3):224-9.

13. Bianchi ME, Agresti A. 2005 HMG proteins: dynamic players in gene regulation and
differentiation. Curr Opin Genet Dev. 15(5):496-506.

Сборка хроматина
 14. Akey CW, Luger K. 2003 Histone chaperones and nucleosome assembly. Curr Opin Struct
Biol. 13(1):6-14.

15. T. Krudea, and C. Keller Chromatin assembly during S phase: contributions

from histone deposition, DNA replication and the cell division cycle. CMLS,
Cell. Mol. Life Sci. 58 (2001) 665–672

16. Henikoff S, Ahmad K. 2005 Assembly of variant histones into chromatin. Annu Rev Cell
Dev Biol. 21:133-53.

Гетерохроматин

17. Dillon N. 2004 Heterochromatin structure and function. Biol Cell. 96(8):631-7.

18. Craig JM. 2005 Heterochromatin--many flavours, common themes. Bioessays. 27(1):17-28.

19. Bender J. 2004 Chromatin-based silencing mechanisms. Curr Opin Plant Biol. 7(5):521-6.

20. Maison C, Almouzni G. 2004. HP1 and the dynamics of heterochromatin maintenance. Nat
Rev Mol Cell Biol. 5(4):296-304.

Метилирование ДНК и импринтинг

21. Bird A, Macleod D 2004 Reading the DNA methylation signal. Cold Spring Harb Symp
Quant Biol. 69:113-8.

22. Fuks F. 2005 DNA methylation and histone modifications: teaming up to silence. Curr Opin
Genet Dev. 15(5):490-5.

23. Reinhart B, Chaillet JR. 2005 Genomic imprinting: cis-acting sequences and regional
control. Int Rev Cytol. 243:173-213.

24. Caiafa P, Zampieri M. 2005 DNA methylation and chromatin structure: the puzzling CpG
islands. J Cell Biochem. 94(2):257-65.

25. Attwood JT, Yung RL, Richardson BC. 2002 DNA methylation and the regulation of gene
transcription. Cell Mol Life Sci. 59(2):241-57.

Тратскрипция через хроматин и активный хроматин

26. Belotserkovskaya R, Reinberg D. 2004 Facts about FACT and transcript elongation through
chromatin. Curr Opin Genet Dev. 14(2):139-46.

27. Belotserkovskaya R, Saunders A, Lis JT, Reinberg D. 2004 Transcription through chromatin:
understanding a complex FACT. Biochim Biophys Acta. 1677(1-3):58-63.

28. Sims RJ 3rd, Mandal SS, Reinberg D. 2004 Recent highlights of RNA-polymerase-II-
mediated transcription. Curr Opin Cell Biol. 16(3):263-71.
 29. Reinke H, Horz W 2004 Anatomy of a hypersensitive site. Biochim Biophys Acta.
15;1677(1-3):24-9.

30. Vermaak D, Ahmad K, Henikoff S. 2003 Maintenance of chromatin states: an open-and-shut

case. Curr Opin Cell Biol. 15(3):266-74.

31. Imhof A. 2003 Histone modifications: an assembly line for active chromatin? Curr Biol.
13(1):R22-4.

Геномные домены, области контроля локуса и инсуляторы

32. Razin SV, Farrell CM, Recillas-Targa F. (2003) Genomic domains and regulatory elements
operating at the domain level. Int Rev Cytol. 226, 63-125.

33. Юдинкова Е.С., Разин С.В. Регуляторные системы геномных доменов с размытыми
границами Генетика 2003, 39, 182-186.

34. Юдинкова Е.С., Разин С.В. Геномные домены и регуляторные элементы доменного
уровняю Мол. Биол. 2002. 36, 947-955.

35. Kimura A, Horikoshi M. 2004. Partition of distinct chromosomal regions: negotiable border
and fixed border. Genes Cells. 9(6):499-508.

36. Dillon, N., Sabbatini, P. 2000. Functional gene expression domains: defining the functional
units of eukaryotic gene regulation. BioEssays 22, 657-665

37. Felsenfeld G, Burgess-Beusse B, Farrell C, Gaszner M, Ghirlando R, Huang S, Jin C, Litt M,

Magdinier F, Mutskov V, Nakatani Y, Tagami H, West A, Yusufzai T. 2004, Chromatin
boundaries and chromatin domains. Cold Spring Harb Symp Quant Biol. 69:245-50.

38. Wei GH, Liu de P, Liang CC. 2005 Chromatin domain boundaries: insulators and beyond.
Cell Res. 15(4):292-300.

39. West AG, Fraser P. 2005 Remote control of gene transcription. Hum Mol Genet. 14 Spec No
1:R101-11.

40. Capelson M, Corces VG. 2004 Boundary elements and nuclear organization. Biol Cell.
96(8):617-29.

41. Kuhn EJ, Geyer PK. 2003 Genomic insulators: connecting properties to mechanism. Curr
Opin Cell Biol. 15(3):259-65.

42. Burgess-Beusse B, Farrell C, Gaszner M, Litt M, Mutskov V, Recillas-Targa F, Simpson M,

West A, Felsenfeld G. 2002 The insulation of genes from external enhancers and silencing
chromatin. Proc Natl Acad Sci U S A. 99 Suppl 4:16433-7.

Part II
Ядерный матрикс и петли ДНК

43. Razin, S.V., Gromova, I.I., Iarovaia, O.V. (1995) Specificity and functional significance of
DNA interaction with the nuclear matrix: New approaches to clarify the old questions.
International Review of Cytology. 162B, 405-448. (нет в инете)

44. Bode J. et al. (1995) Scaffold/Matrix attached regions: Structural properties creating
transcriptionally active loci. International Review of Cytology. 162A, 389-444. (нет в инете)

45. Iarovaia et al. (2004) Visualization of individual DNA loops and a map of loop-domains in
the human dystrophin gene. Nucl. Acids Res. 32, 2079-2086.

Компартментализация клеточного ядра

46. Handwerger KE, Gall JG. (2006). Subnuclear organelles: new insights into form and
function. Trends Cell Biol. 16(1):19-26.

47. Lam YW, Trinkle-Mulcahy L, Lamond AI. (2005) The nucleolus. J Cell Sci.118(Pt 7):1335-
7.

48. Lamond AI, Spector DL. (2003) Nuclear speckles: a model for nuclear organelles. Nat Rev
Mol Cell Biol. 4:605-12.

49. Iborra FJ, Cook PR. (2002) The interdependence of nuclear structure and function. Curr
Opin Cell Biol. 14(6):780-5.

50. Cook PR. (1999) The organization of replication and transcription. Science. 284(5421):1790-
5

51. Pombo A, Jones E, Iborra FJ, Kimura H, Sugaya K, Cook PR, Jackson DA. (2000)
Specialized transcription factories within mammalian nuclei. Crit Rev Eukaryot Gene
Expr. 10(1):21-9 (нет в интеренете)

52. Cremer T, Cremer C. (2001) Chromosome territories, nuclear architecture and gene
regulation in mammalian cells. Nat Rev Genet. 2(4):292-301

53. Zink D, Cremer T. (1998) Cell nucleus: chromosome dynamics in nuclei of living cells. Curr
Biol. 8(9):R321-4

54. Sproul D, Gilbert N, Bickmore WA. (2005) The role of chromatin structure in regulating the
expression of clustered genes. Nat Rev Genet. 6(10):775-81

55. Chubb JR, Bickmore WA. (2003) Considering nuclear compartmentalization in the light of
nuclear dynamics. Cell. 112(4):403-6.

Репликация ДНК
56. Newlon CS, Theis JF. (1993) The structure and function of yeast ARS elements. Curr Opin
Genet Dev. 3(5):752-8

57. DePamphilis ML. (1993) Origins of DNA replication in metazoan chromosomes. J Biol
Chem. 268(1):1-4

58. DePamphilis ML. (1993) Eukaryotic DNA replication: anatomy of an origin. Annu Rev
Biochem.62:29-63.

59. Hamlin JL. (1992) Mammalian origins of replication. Bioessays. 14(10):651-9. (Кому
нужен обзор 92 года – налетай, торопись, покупай живопись!!!)

60. Hamlin JL, Dijkwel PA. (1995) On the nature of replication origins in higher eukaryotes.
Curr Opin Genet Dev. 5(2):153-61

61. Donovan S, Diffley JF. (1996) Replication origins in eukaroytes. Curr Opin Genet Dev.
6(2):203-7

62. Donaldson AD, Blow JJ. (1999) The regulation of replication origin activation. Curr Opin
Genet Dev. 9(1):62-8

63. Bogan JA, Natale DA, Depamphilis ML. (2000) Initiation of eukaryotic DNA replication:
conservative or liberal J Cell Physiol. 184(2):139-50

64. Pasero P, Schwob E. (2000) Think global, act local--how to regulate S phase from individual
replication origins. Curr Opin Genet Dev. 10(2):178-86.

65. Gilbert DM. (2001) Making sense of eukaryotic DNA replication origins. Science.
294(5540):96-100

66. DePamphilis ML. (2003) The 'ORC cycle': a novel pathway for regulating eukaryotic DNA
replication. Gene. 22;310:1-15

67. Aladjem MI, Fanning E. (2004) The replicon revisited: an old model learns new tricks in
metazoan chromosomes. EMBO Rep. 5(7):686-91.

68. Gilbert DM. Origins go plastic. (2005) Mol Cell. 20(5):657-8.

69. Wang J, Sugden B. (2005) Origins of bidirectional replication of Epstein-Barr virus: models
for understanding mammalian origins of DNA synthesis. J Cell Biochem. 94(2):247-56.

70. Donaldson AD. (2005) Shaping time: chromatin structure and the DNA replication
programme. Trends Genet. 21(8):444-9.

71. McCune HJ, Donaldson AD. (2003) DNA replication: telling time with microarrays.
Genome Biol. 4(2):204