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O R I G I N A L PAPER
M. C. M. Hensing • K. A. Bangma
L. M. Raamsdonk " E. de Hulster • J. P. van Dijken
J. T. Pronk
Abstract Growth conditions relevant for the large- cerevisiae. However, S. cerevisiae has some less favour-
scale production of heterologous proteins with yeasts able characteristics, including hyperglycosylation of ex-
were studied on a laboratory scale. A strain of creted proteins (Innis 1989), a limited protein-secretion
Kluyveromyces lactis, containing 15 copies of an ex- capacity (Kingsman et al. 1987) and a Crabtree-positive
pression cassette encoding guar e-galactosidase integ- physiology (Petrik et al. 1983; Postma et al. 1988).
rated into its ribosomal DNA, was used as a model. By Therefore, other yeast host systems are currently being
using urea as a nitrogen source, it was possible to developed (for a review see Romanos et al. 1992).
produce active extracellular c~-galactosidase in shake- A yeast that does not have the above drawbacks is
flask cultures grown on a defined mineral medium. Kluyveromyces lactis. Large-scale fermentation techno-
Inclusion of urea instead of ammonium sulphate pre- logy is available for the production of fi-galactosidase
vented unwanted acidification of cultures. With urea- (lactase; EC 3.2.1.23) with K. lactis. K. lactis has the
containing mineral medium, enzyme production in GRAS (generally regarded as safe) status, which is
shake flasks was comparable to that in complex media a major advantage for the implementation of large-
containing peptone. In contrast, the presence of pep- scale production of heterologous proteins for food and
tone was required to achieve high productivity in pharmaceutical applications.
chemostat cultures. The low productivity in chemostat Heterologous proteins that have been successfully
cultures growing on mineral media was not due to loss produced in K. lactis include bovine prochymosin (Van
of the expression cassette, since addition of peptone to den Berg et al. 1990), human serum albumin (Fleer et al.
such cultures resulted in an immediate high rate of 1991a), human interleukin-lfi (Fleer et al. 1991b) and
c~-galactosidase production. The discrepancy between hepatitis-B surface antigen (Martinez et al. 1992). With
the behaviour of shake-flask and chemostat cultures the exception of prochymosin production, the expres-
during growth on mineral medium illustrates the sion vectors used for heterologous protein production
necessity of physiological studies for the scaling-up of in K. lactis were episomal. These systems are character-
heterologous protein production from laboratory to istically unstable under non-selective process condi-
production scale. tions and are therefore less suited for large-scale com-
mercial production. The integrated expression system
used for prochymosin production (Van den Berg et al.
1990) was highly stable, but had a low copy number,
Introduction which may have limited the expression level.
Ideally, vectors for the expression of heterologous
The most extensively studied host for the production of genes under non-selective, industrial conditions should
heterologous proteins with yeasts is Saccharomyces combine the high-copy-number characteristic of epi-
somal expression vectors and the high mitotic stability
of integrating vectors. A system based on homologous
M. C. M. Hensing • K. A. Bangma • L. M. Raamsdonk recombination of expression vectors into the iterative
E. de Hulster • J. P. van Dijken • J. T. Pronk ( ~ ) ribosomal DNA units of S. cerevisiae has been de-
Department of Microbiology and Enzymology, veloped by Lopes et al. (1989). This so-called MIRY
Kluyver Laboratory of Biotechnology,
Delft University of Technology, (multiple integration into the ribosomal DNA of yeast)
Julianalaan 67, 2628 BC Delft, system enabled expression-vector copy numbers of
The Netherlands. Fax: +31-15-782355 100-200. The copy number of the plasmids was stable
59
Results
c~-galactosidase production in shake-flask cultures:
~-Galactosidase production in shake-flask cultures: defined media
complex media
Growth of K. lactis MSK110-MIRK in shake-flask
Several K. lactis strains containing multiple copies of cultures on the standard mineral medium resulted in
a guar-e-galactosidase expression cassette, stably integ- very low c~-galactosidase levels (Table 1). Since the vir-
rated into the iterative ribosomal DNA unit have been tual absence of c~-galactosidase activity in these cultures
Table 1 Effect of medium composition on extracellular e-galac- described in Materials and methods. (YP complex medium; yeast
tosidase production, growth and pH in shake-flask cultures of extract/peptone, M M mineral medium with galactose)
K. lactis M S K l l O - M I R K . All cultures were grown at 30°C as
coincided with a sharp drop of the culture pH Indeed, when K. lactis MSK110-MIRK was grown in
(Table 1), the effect of medium pH on the stability of mineral medium with urea as a sole source of nitrogen,
~-galactosidase was investigated. acidification was not observed (Table 1). Furthermore,
When culture supernatants containing c~-galac- biomass concentrations were approximately twofold
tosidase were incubated at pH 3 (the pH observed after higher than in cultures supplemented with ammonium
growth on mineral medium with ammonium sulphate), (Table 1), suggesting that, in the latter cultures, growth
the enzyme was completely inactivated after 1 h was inhibited by the low pH. When the c~-galactosidase
(Fig. 1). In contrast, no loss of activity was observed production in the shake-flask cultures was related to
after 24 h incubation of c~-galactosidase in mineral me- the biomass concentration, c~-galactosidase production
dium adjusted to pH 5 or 7. It is as yet unclear whether in cultures grown on a mineral medium with urea was
the apparent instability of the enzyme at low pH is due about 50% lower than in cultures grown on complex
to intrinsic properties or to extracellular proteases ac- medium (Table 1).
tive at low pH.
In mineral medium, the main cause for acidification
is the consumption of ammonium salts, which leads
to the stoichiometric release of protons, as described c~-Galactosidase production in chemostat cultures
by Eq. 1. grown on mineral media
1110 C6H1206 + 610 NH4 + + 2792.5 02
The key parameter for comparison of expression levels
1000 C3.67H6.TNo.61 O2.o4 (biomass) of proteins is the specific product formation rate qp
[-expressed as mg product (gbiomass) -1 h-X]. In
+ 2990 CO2 + 610 H ÷ + 4225 H 2 0 (1) shake-flask cultures, both the growth conditions and
In Eq. 1, all amounts are given in millimoles. The the concentration of biomass and product are continu-
biomass composition has been taken from Roels (1983) ously changing, which makes it laborious to estimate
and a Ysx of 0.5 g biomass (g sugar)-t has been used qp.
(Verduyn 1991). Since, in shake-flask cultures, it is A rough estimate of qp (mg g - 1 h - 1 ) in the shake-
difficult to control pH by titration, we looked for ways flask experiments presented in Table 1 can be obtained
to prevent acidification. Since the formation of yeast by dividing the c~-galactosidase concentration after 48 h
biomass with urea as the nitrogen source is not asso- incubation by half of the biomass concentration after
ciated with acidification (Eq. 2), growth of K. lactis 48 h and by 48. For the shake-flask cultures grown on
M S K l l 0 - M I R K with urea as the nitrogen source was galactose as the carbon source in complex medium and
investigated. mineral medium (with urea as nitrogen source), these
estimated values of qp were 0.8 and 0.5 mg (g dry
1110 C6H1206 + 305 CH4N20 (urea) + 2792.5 02 --. weight)-1 h-1. However, these figures only give an
1000 C3.67H6.TNo.61 O2.o4 (100 g biomass) indication of the order of magnitude of qp in these
shake-flask cultures, since biomass and enzyme concen-
+ 3295 CO2 + 3920 H 2 0 (2) trations were only measured twice.
Chemostat cultivation facilitates the calculation of qp
which, at constant dilution rate, is given by the equa-
5 II tion qp = D x Cp x c[ 1, in which D is the dilution rate
(h-1) and Cp and cx are the steady-state concentrations
of product (~-galactosidase) and biomass, respectively.
=_'2 A further advantage of chemostat cultivation is that
product formation can be studied at growth rates be-
low #ma~. This is essential for the modelling of large-
scale fed-batch fermentations, which are characteristi-
cally run at a low and decreasing growth rate
(Stouthamer and van Verseveld 1987).
In contrast to the shake-flask cultures, the chemostat
cultures were equipped with pH control. Therefore,
problems with the stability of c~-galactosidase at low
pH (Fig. 1) were not anticipated. However, the specific
rate of c~-galactosidase production in these cultures,
0 1 2 3 4 5 24
grown at pH 5, was extremely low (Table 2) compared
Time (h)
to the rates estimated for the shake-flask cultures
Fig. 1 Stability of heterologous c~-galactosidase, produced by K. grown on mineral medium with urea as the nitrogen
lactis MSKll0-MIRK, during incubation at 30°C in mineral me- source. Control experiments in which chemostat cul-
dium adjusted to different pH values. O pH 7; • pH 5; • pH 3 tures were grown on mineral medium with urea as the
62
Table 2 Effect of medium composition on extracellular c~-galac- Materials and methods, with a reservoir galactose concentration of
tosidase production by K. lactis MSK110-MIRK in chemostat cul- 5 g 1- 1. [ y p complex medium: yeast extract/peptone, M M (NH,~)
tures. All cultures were grown aerobically (with one exception), at mineral medium with ammonium, M M (urea) mineral medium with
30°C, at a dilution rate of 0.10h -1 and at pH 5, as described in urea, Y, yeast extract, P peptone]
nitrogen source indicated that the low qp in these cul- Effect of complex medium components
tures was not due to a specific effect of the nitrogen on e-galactosidase production in chemostat cultures
source (Table 2).
High residual galactose concentrations were ob- To study further the effect of medium composition on
served in all steady-state chemostat cultures grown on ~-galactosidase production in K. lactis M S K l l 0 -
mineral media (Table 2). A possible explanation for this MIRK, the organism was grown in aerobic chemostat
observation is that the truncated TRPI-d promoter cultures on the complex medium that gave a high
caused a partial tryptophan auxotrophy, even though productivity in shake-flask cultures (Table 1). Growth
the modified TRPI-d gene was present in multiple co- on this medium, composed of yeast extract, peptone
pies. To test this hypothesis, 0.2 g 1-1 tryptophan was and galactose, resulted in a qp that was higher than the
added to the mineral medium. Indeed, this addition estimated qp in shake-flask cultures grown on complex
resulted in a substantial decrease of the residual galac- medium (Table 2). The difference between the produc-
tose concentration (Table 2). However, qp did not in- tivity of chemostat cultures grown on complex and
crease substantially as a result of the addition of tryp- defined media can be interpreted in two ways: either as
tophan (Table 2). In theory, a low expression level in a stimulation of ~-galactosidase production by com-
this situation might have been due to a poor induction pounds present in the complex medium or as an inhibi-
of the GAL7 promoter due to the low residual galactose tion by components of the mineral medium. Since addi-
concentration. In transient-state experiments, where tion of all mineral medium components to the complex
galactose (20 g 1- 1) was pulsed to a tryptophan-supple- medium did not negatively influence product formation
mented culture, no significant increase of the e-galac- (Table 2), it was concluded that inhibition by mineral
tosidase production rate was observed (data not medium components was unlikely.
shown). This experiment eliminated tryptophan defi- The addition of 5 g 1-1 peptone to the mineral me-
ciency as a possible cause for the low productivity in dium restored production rates to the level observed in
chemostat cultures grown on mineral media. cultures grown on complex medium (Table 2). A fur-
Shake-flask cultures of yeasts become oxygen-lim- ther increase of qp to 2.3 mg g - 1 h-1 was observed
ited during prolonged growth. To investigate whether when the peptone concentration in the reservoir me-
the discrepancy between batch and chemostat cultures dium was raised from 5 g 1-1 to 10 g 1-1. A further
might be related to oxygen availability, the dissolved- increase of the peptone concentration did not result in
oxygen concentration in the chemostat culture was a higher production rate (data not shown). In contrast
decreased by diminishing the air supply until ethanol to the addition of peptone, addition of only yeast ex-
appeared in the culture. In such an oxygen-limited tract (5 g 1-1 ) resulted in much lower increase of c~-ga-
culture, qp increased approximately fivefold in com- lactosidase production (Table 2).
parison with aerobic chemostat cultures grown on min-
eral media (Table 2). The product formation rate in
oxygen-limited chemostat cultures was still about Stability of the expression cassette
threefold lower than the qp estimated for batch cultures
with urea (Table 1). A growth-limiting oxygen supply is The stability of the MIRK expression system was
not a viable option for large-scale industrial production studied by prolonged cultivation of K. lactis M S K l l 0 -
of e-galactosidase, since it will inevitably lead to alco- MIRK on complex medium with galactose in
holic fermentation. Therefore, this option was not fur- a chemostat culture. A decrease of qp to approximately
ther studied. 70% of the initial value was observed within the first 10
63
view of the limited oxygen-transfer and cooling capaci- Innis MA (1989) Glycosylation of heterologous proteins in Sacchar-
ties of the bioreactor. omyces eerevisiae. In: Barr P J, Brake JA, Valenzuela P (eds) Yeast
Even after prolonged cultivation on complex medium genetic engineering. Butterworth, Boston, pp 233-246
Kingsman SM, Kingsman AJ, Mellor J (1987) The production of
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confirms and extends earlier studies with shake-flask technol 5:53 57
cultures of this strain of K. lactis (Bergkamp et al. 1992). LaRue TA, Spencer JFT (1968) The utilization of purines and
It is at present unclear whether the phenomena ob- pyrimidines by yeasts. Can J Microbiol 14:79-86
served with the multicopy-integration system used in Lopes TS, Klootwijk J, Veenstra AE, Van der Aar PC, Van Heerik-
huizen H, Rau6 HA, Planta RJ (1989) High-copy-number integ-
the present study also occur in other MIRY or MIRK ration into the ribosomal DNA of Saccharomyces cerevisiae:
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ported on these systems were performed in complex Martinez E, Morales J, Aguiar J, Pineda Y, Izguiredo M, Ferbeyre
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Meier H, Reed JSG (1982) Reserve polysaceharides other than
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Acknowledgements We thank Dr. Ronald Bergkamp for providing Roels JA (1983) Energetics and kinetics in biotechnology, Elsevier
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Netherlands, and by the Dutch Ministry of Economic Affairs. in yeast: a review Yeast 8:423-488
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