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Cell Biology and Immunology Lecture 3 en 4 2023
Cell Biology and Immunology Lecture 3 en 4 2023
Lecture 3 :
Innate immunity
1
Organization of the immune system
Innate Immunity:
The first line of internal defense
Key features:
• Initial and rapid response against invasion by a variety of pathogens
• Main components:
– Humoral: Complement system, cytokines
– Cellular: Phagocytes and Natural killer cells 3
The innate immune system is ready to
respond immediately!
Activation of the innate immune
response has 2 main functions: Phagocytosis
Lysis
Observation of “danger”
4
Questions
5
How are pathogens recognized by the
innate immune system?
Microbes express molecules that are not
expressed by mammals
6
Pattern recognition receptors:
detection of microbes (PAMPs)
Diverse receptors to recognize PAMPs
àPattern recognition receptors
(PRR)
e.g. Mannose receptors, toll-like
receptors ( LPS, CpG, viral DNA, viral
RNA)
Pathogen Pattern
Associated Recognition kinases transcription factors
Molecular Receptor
Patterns
Effect Significance
• Enhanced phagocytose – pathogen elimination
• Cytokines and chemokines- communication
• Co-stimulatory molecules- activation of adaptive immunity
• Antigen presentation molecules- activation of adaptive immunity
• Adhesion molecules- cell-cell interaction
8
CD14
MD MD M M LBP
-2 -2 LBP D -2 D -2
LPS
LR
RN
T RN
T LPS LR
RN
T
LPS RN
T
LR LR
R
LR
LR
R
LRRNT
LRRNT
LRRNT
LRRNT
LR
LR
R
R
BTK Y187 TAB1
TRAM TIR UbIRAK Ub
Y86
TIR Ub 1 TAKTAB2/3 Ub
TIR TIR TIR
TIR
TIRMAL
TIR P Ub DD Ub
TRIF Bcl Pellino 1
T209 Ub IRAK
Kinase
T209
Kinase
D311 10 TRAF K239 TRAF 1K239
Kinase
T342 TIFA DD
My T345T209 6 T387 6 T387
Kinase
D88 S346 K2396 Bcl Bcl
IRAK DD IRAKT387 TRAF 10 10
1 4 IRAK TIFA TIFA
P TRAF DD DD 1
TAK 6 TRIF TIR
P DD
Kinase
TRAF TRAF P
1 Ub T178 T178
3 TRIF TIR 6 P
UbUbRIP1 S526 S526
T184
TAK P P TAK
T184
TAB1 TAB1
TANK NAP1 S36 MEKK3
MEKK3 1 1
TBK IKK S36
IkBa IKKg
P
Ub
P
Ub TAB2/3
Pellino
TAB2/3Ub
Ub
1 ε IkBa NFkBNFkB
Ub
TRAFBcl TRAF
Ub
p65 p50 IKK IKK TAK Bcl
Ubc13
1 Ubc13 6 1010 6
a b Uev1A
P Uev1A
IKKg P TAB1
MALT1
MALT1
PIKK IKK P P
IRF SCF b
IKKg
P P a b 5
Ub Ub Ligase
Ub S32 P P Ub
Ub
IRF IRF Ub S36 PIKK IKK P p105
P
Ub
3 7 IkBa MEKK3 p105
SCF b
a b Tpl2 Ub Ligase
IRF P IRF P S32
S36
3 7 S276 IkBa P P P P
NFkB NFkB NFkBNFkB p38 JNK1/2 Erk 1/2 Tpl2
p65 p50 p65 p50
MIP-3 a
Il-6 Rantes
Il-12 iNOS
P IkB a COX-2 H3 HH2B
CBP/p300
P P
S276
IFN b
MCP-1
Il-1 b 4
P P P IRFIRF P P P P cIAP-1
IRF IRF NFkB NFkB TNF a cIAP-2
3 7 IRF S276 P/CAF3 7 p65 p50 CRE Fos
P IRFIRF PAc
C- C- ATF
Jun
AAAAA H4 H32A
H
P IRF IRF P 5 HAT Ac B
NFkB NFkB K122 K221
3 7 p65 p50 3 7
PRR activation à Cytokines: communication
molecules of the immune system
• Large group of small
molecules (±5-20 kD)
important for cell
communication and
signaling
10
PRR activation à Cytokines: communication
molecules of the immune system
• Cytokine actions:
– Pleiotroop: One cytokine affects multiple cell types
– Redundancy: Multiple cytokines affect the same
celltypes
11
PRR activation à Cytokines: communication
molecules of the immune system
Infection
Ø Pleiotropy
e.g. activation of cells Ø Redundancy 12
Binding of viral DNA/RNA to PRRs
results in production of type I Interferons
Granulo-
natural cytes
celltype monocytes/ eosinophilic mast cells dendritic cells
killer cells macrophages granulocytes
Granulocytes
15
Components of innate immunity
Phagocytes 2: Monocytes, macrophages and dendritic
cells
Blood Tissues
function: - phagocytosis
- link pathogens to
adaptive immunity
16
Neutrophils are the most abundant
leukocytes in the blood
Cell type Blood conc. Basic function lifespan
Red blood cells 5x106/µl, O2 and CO2 transport 120 days
45% of blood vol.
18
Components of innate immunity
Cells: The neutrophil
19
Neutrophil function
• Finding the bug (i.e. move from the blood to the site of
infection)
– Rolling, adhesion and transmigration
– Chemotaxis
• Eating the bug
– Phagocytosis
• Killing the bug
– Reactive oxygen species
– Lysosomal enzymes
20
1:Rolling
2:Adhesion
3:Transmigration
4:Chemotaxis
5:Phagocytosis
21
22
Chemotaxis
23
Phagocytosis: most important effector
mechanism of the innate immune system
endocytosis
receptors
recognition
endocytosis
degradation
release of
degradation
products
24
Phagocytosis is a receptor mediated
event
Ensures that only unwanted particles are ingested.
Opsonin Pattern
Patternrecognition
Some pathogens (e.g. recognition
receptors
Some pathogens express
receptors receptors
Encapsulated bacteria) need to surface molecules that can
be ‘tagged’ first by other directly bind to PRRs and
components of the immune trigger phagocytosis.
system (antibodies,
complement--> opsonisation)
Outside
Cell membrane
Cytoplasm Fc receptor
Complement Mannose Scavenger
receptor receptor receptor
25
Intracellular digestion by phagocytes
1.Constitutive expression of
proteolytic lysosomal enzymes
2. Activation of NADPH-oxidase (à
reactive oxygen intermediates,
respiratory burst) and iNOS (à
nitric oxide intermediates,
nitrosative burst)
26
Reactive oxygen species
Actvated neutrophils undergo an “oxidative burst”
“Bleekwater (bleach)”
27
Neutrophil granules are loaded with
destructive enzymes
Azurophilic Specific Gelatinase Secretory
granules granules granules vesicles
CD63 CD11b/CD18 Histaminase CD11b/CD18 Alkaline phosphatase
CD68 CD15 Heparanase Cytochrome b558 CD10
Presenilin 1 CD66 Lactoferrin Diacylglycerol CD11b/CD18
Stomatin CD67 Lysozyme deacetylating CD13
V-type H+-ATPase Cytochrome b558 NGAL fMLP-R CD14
b-glycerophosphatase fMLP-R uPA Leukolysin CD16
mucopolysaccharide Fibronectin-R Sialidase NRAMP-1 CD45
a1-Antitrypsin G-proteina-subunit Transcobalamin SCAMP CR1
a-Mannosidase Laminin-R ICRISP-3 SNAP-23, -25 C1q-R
Azurocidin Leukolysin (SGP-28) uPA-R Cytochrome b558
BPI NB1 antigen Gelatinase VAMP-2 Decay-accelerating
b-Glycerophosphatase 19-kDa protein hCAP-18 V-type H+-ATPase fMLP-R
b-Glucuronidase 155-kDa protein Acetyltransferase Leukolysin
Cathepsins Rap1, Rap2 B2-microglobulin VAMP-2
Defensins SCAMP CRISP-3 V-type H+-ATPase
Elastase SNAP-23, -25 Gelatinase Plasma proteins
Lysozyme Stomatin Lysozyme
MPO Thrombospondin-R
N-acetyl-b- TNF-R
glucosaminidase uPA-R
Proteinase-3 VAMP-2
Sialidase Vitronectin-R
Ubiquitin-protein b2-Microglobulin
Collagenase
28
Components of innate immunity:
Natural Killer cells
T-lymphocyte-like cells
without antigen receptor
• cytokines various
30
Cytokines of the innate immune system
31
Components of innate immunity
Complement system
- Humoral part of innate immunity
32
Complement activation serves three
important functions
Blood vessel
1. Inflammation: recruitment
and activation of neutrophils 2. Lysis of microbes
(C3a en C5a) (membrane attack
complex)
Complement
proteins
3. Opsonisation
of microbes
(C3b)
33
How does innate immunity link to
adaptive immunity ?
Activation of the innate immune
response has 2 main functions: Phagocytosis
Lysis
Observation of “danger”
34
Professional antigen presenting cells:
dendritic cells
APC’s: antigen presentation and additional signals
Link innate with adaptive immunity- initiate immune reponses
T-
35
Dendritic cells:
transport and presentation of antigen
Microbe
Antigen uptake
Phagocytosis
PRR’s and transport
Cytokines
Antigen presentation
and initiation immune
response
36
Functions of the innate immune system
killing, inflammation & adaptive responses
Inflammation
Pro-inflammatory
micro-organisms cytokines
IL-1
TNFa
IL-6
Activation of
the adaptive immune system 37
Innate immunity: summary key features
• Fast (hours)
• Components:
– Complement, cytokines
(humoral)
– Cells (NK cells, phagocytes)
• Specificity: PAMPsàPRRs
(germline encoded)
38
Next lecture
39
40
Physiology and Therapy
The immune system (Chapter 24)
Lecture 4 :
Adaptive immunity
41
Organization of the immune system
Innate immunity
direct recognition (and killing) of pathogens after infection:
43
the importance of adaptive immunity
innate immunity
(BOA: immediately available but..
insufficiently equipped )
adaptive immunity
(special forces: fully equipped but...
must be mobilised and instructed)
45
Types of adaptive immunity
47
Phases of adaptive immunity
48
How is the adaptive immune
system able to recognize so many
diverse pathogens?
49
Adaptive immune system:
Randomly generated unique antigen specific receptors
- many different B- and T-cells are needed to obtain a large enough
repertoire to recognize the variety of pathogens encountered
- each day, millions of new B- and T-cells are formed with new,
randomly generated receptors but for each specificity only a few exist
initially. Estimation 100x106 per day!
Antigen receptor
lymphocyte
51
Antigen receptor diversity is created by random
combinations of gene segments
52
But if this is a random
process than there is a big
chance that self proteins
are also recognized and that
could be dangerous?
53
Specificity and diversity
The clonal selection hypothesis
2. Removal of self-reactive
lymphocytes
54
Adaptive immune responses:
the problem
Small amounts of antigen,
somewhere in the body
?
T B
Rare specific B and T cells,
somewhere in the body
55
Peripheral lymphoïd organs:
sites for initiation of adaptive immune responses
56
Ok that’s fine, but how do
lymphocytes recognize the
pathogenic antigens?
57
Pathogen recognition: B cells
58
Pathogen recognition by
T lymphocytes
• T lymphocytes indirectly
recognize parts of the pathogen
(peptide-antigens) presented by
specialized receptors : antigen
presentation
60
Major Histocompatibility Complex
Comprises 4 million bp (0.1 % human genome) containing 200 coding loci
Chromosome 6
alleles
proteins
62
MHC: extensive polymorphism
63
Co-dominant expression of MHC
Creates diversity on the individual level.
father
mother
child
64
What is the significance of MHC
polymorphism and co-dominant expression?
At the individual level: 6 different MHCI molecules
6 different MHCII molecules
65
Why do we have two types of MHC ?
Different classes of pathogens require
a different immunological approach
68
MHC: key properties
Feature Significance
Co-dominant expression Increased number of different MHC
Molecules that can present peptides
molecules
69
Great, so now B and T lymphocytes
have recognized an antigen and
become activated?
70
T cell-mediated responses: co-stimulation
Signal 1
Antigen
recognition
Co-stimulation Signal 2
Interaction of phagocytes with microbes:
Innate immune system alerts adaptive immunity
Pathogen
Endocytosis receptors
TLR
CD4+ T cell
72
B cell-mediated responses: T cell help
Signal 1
Antigen
recognition
Signal 2
CD4+ T cell
Help (cytokines
Co-stimulation)
73
T and B cell activation requires (at least) two
signals
T cell:
• Signal 1: Antigen binding to TCR
in the context of MHC
• Signal 2: Co-stimulatory
receptor-ligand pairs
Example: CD28(T cell)- B7 (APC)
B cell:
• Signal 1: Antigen binding to BCR
• Signal 2: Interaction with CD4+T cell
Significance
Signal 1: ensures specificity of response
Signal 2: ensures that response is induced only when needed
74
OK, B and T lymphocyte activation
requires two signals but what do
they do to help eliminate the
pathogen?
75
B-cell physiology
CD4 T cell
help
78
Antibodies: Structure
• Antibody mediated
elimination of antigens
involves a number of effector
mechanisms
Antibody dependent
cytotoxicity
82
T-cell physiology
84
CTL-effector function: “the kiss of death”
CTL-target cell conjugate formation
CTL CTL
CTL
CTL
CD4+ T lymphocyte activation:
effector cells that orchestrate immune responses
Th-cells: different sub-sets….
different cytokine signatures….
different effector functions
macrophage activation
inflammation
humoral response
immune regulation
humoral response,
allergic reactions
inflammation
Th0=naïve T cell
Development of CD4+ T lymphocyte subsets
is determined by dendritic cells and the (cytokine)
environment
TGFβ IFNγ
FoxP3 Tbet
TGFβ
IL-12 the nature of the
Bacteria DC
infection
Viruses PRR activation determines the
Fungi
nature of the
Protozoa
immune response:
Helminths IL-6 Tailor made
immunity
GATA3 RORγT
IL-4 TGFβ
87
Adaptive immunity: key features
Feature Mechanism Significance
B and T lymphocytes Ensures that distinct
Specificity bind and respond to pathogens elicit specific
foreign molecules responses
(antigens) via antigen
specific receptors
Very large >108 Enables immune system
Diversity to respond to a large
variety of antigens
89