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Collision-Induced State-Changing Rate Coefficients
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Volume 19
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7 January 2017
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1 Introduction
medium 7 , as well as in the atmosphere of Saturn’s moon Titan 8 .
The study of the molecular complexity in the interstellar medium Furthermore, HCN also lies at the roots of reaction networks pro-
(ISM) provides us with fundamental information on the chemical posed to explain the origins of RNA, protein, and lipid precursors,
storage of species and on the energy available for the formation as discussed in 9 and also in 10 . Various biomolecular building
of stars and planets 1 . It also gives us useful indication about the blocks, such as nucleobases, cofactors, and amino acids, e.g. see:
chemical inventory that the primitive Earth may have inherited Oro’ 11 and Ferris et al. 12 , have been detected among the reaction
and about the formation paths of many of the species increasingly products of HCN polymerization experiments.
discovered by direct observations 2 . In particular, the molecular
More specifically for the present study, and for the general
species with the nitrogen-carbon(CN) backbone are especially rel-
case of CN-bearing molecules, the last decade of observations
evant for prebiotic chemistry, since e.g. the heterocyclic rings of
has brought to light the presence of such species like cyanamide
RNA and DNA nucleobases contain such a structure 3 .
(NH2CN): Fahrenbach et al. 13 and Powner et al. 14 just to men-
It is in fact notable that a simple molecule like HCN is already
tion one example of a molecule bearing the backbone in ques-
ubiquitous in the solar system and beyond, having been detected
tion. Furthermore, its isomer carbodiimide (HNCNH), see:Merz
on comets 4 , in various planets as shown by Tokunaga et al. 5
et al. 15 , and urea (NH2CONH2 ): Becker et al. 16 are indeed also
and in Lellouch et al. 6 , in dwarf planets and in the interstellar
considered key molecular precursors for the synthesis of RNA and
DNA ribonucleotides which can occur under the early earth con-
a
ditions. It is also interesting to note that all the three above exam-
Departamento de Química Física, University of Salamanca Plaza de los Caídos sn,
37008, Salamanca, Spain.
ples have been recently detected in the Interstellar Medium (ISM)
b
Department of Chemistry, Koc University Rumelifeneriyolu, Sariyer TR 34450, Istan- environment: see Turner et al. 17 , McGuire, B. A. et al. 18 ,and
bul, Turkey. Belloche et al. 19 . Additionally, the simpler cynomidyl radical
c
Departamento de Quimica Fisica Aplicada, Modulo 14, Universidad Autonoma de HNCN has also been observed very recently in the direction of
Madrid, 28049 Madrid, Spain.
d the G+0.693-0.027 molecular cloud, e.g. see: Rivilla et al. 20 .
Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck Technikerstr.
25 A-6020, Innsbruck, Austria. The latter has been considered as an ideal target to detect new
∗
Email: francesco.gianturco@uibk.ac.at molecular species since it has shown a very rich chemistry of com-
† Electronic Supplementary Information (ESI) available: [The multipolar coeffi- plex organic molecules, and in particular of N-bearing species like
cients for the Legendre expansion of the rigid rotor interaction potentials for both
cyanamide (NH2CN)Zeng et al. 21 , iminopropyne (HCCCHNH)
NCN/He and CNN/He and the computed inelastic cross sections, and corresponding
rate coefficients, from the 2D-RR-PESs employed in this work are available as Sup- Bizzocchi et al. 22 and ethanolamine (NH2CH2CH2 OH) Rivilla
plementary Material to the present publication.]. See DOI: 10.1039/cXCP00000x/ et al. 23 . In fact, it has been in that direction that several rota-
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Fig. 2 Pictorial representation of the spatial features of the interaction Fig. 3 Pictorial representation of the spatial interaction between the
between the NCN radical and an He atom. See main text for further CNN radical and the He atom. See main text for further details.
details.
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−10
He + NCN
−10 the rotational energy levels within the pseudo-singlet simplifica-
−15 V0 V2 V4 V6 V8 V10 tion, we report in the Supplementary Information the lower rota-
4 6 8 10 12 14 tional states within about 100 cm−1 of energy. We see there that
R/Å excited rotational levels up to j= 14 or 15 become energetically
accessible at the T conditions expected to be present in the diffuse
Fig. 4 Radial multipolar coefficients for the interaction potential energy
molecular clouds environment.
surfaces between the CNN (upper panel), NCN (lower panel) radicals
and the He atom. See main text for further comments. To see more clearly the relative role and abundances of a large
number of states which can be available, we have prepared two
additional Figures, reported in the Supplementary Information,
is next in size only to the one of the spherical interaction of λ =0. where we show the equilibrium populations up to about 150 K
These clear strength dominance features play a significant role for of the rotational states of the two present systems. One sees
the cross section behaviour, since they are indicators of strong di- there that rotational states up to about jmax = 20 could be sig-
rect coupling induced by the interaction between target rotational nificantly contributing to an equilibrium population up to 80 K if
states with ∆j=2. one expects the diffuse cloud environments to have reached local
thermal equilibrium (LET). This structural features will further be
100 discussed later when we shall examine the results from the scat-
V0
V1 tering processes for both neutral radicals and the efficiency of the
V2
80 V3 collision-driven inelastic processes causing state changes in the
V4
V5 expected ISM environments.
60
3 Rotationally Inelastic Quantum Dynamics
Vλ / cm−1
j = N+S (3)
Fig. 5 Same coefficients as those in Figure 4 but here for an enlarged
view of the shorter radial distances involving the CNN radical partner. It thus follows that each j level (with j≥1) is split into three
See main text for further details.
subleves F1 , F2 , F3 which have the following rotational wavefunc-
tions:
The actual multipolar radial functions were numerically fitted
with standard polynomial forms and further connected smoothly
to the asymptotically correct long-range potential representing |F1 j mi = |N = j − 1, S j mi
the polarizability of the He partner and also the dipole term for
the CNN radical partner. Hence, the long range potential is given |F2 j mi = |N = j, S j mi (4)
by the following leading terms
|F3 j mi = |N = j + 1, S j mi
C6 2α0 µ
VLR (θ ) = − + 5 cos(θ ) (2)
2R6 R where |mi defines the projection of j along the space-fixed z-axis.
where α0 for the He atom is 1.383 a30 , while the rigid-rotor dipole For a given value of N, the molecular rotational quantum num-
moment of CNN is µ = 0.2169 Debye. The C6 dispersion co- ber, the corresponding relative energies for the three levels de-
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2λ N
BN(N + 1) − DN 2 (N + 1)2 −
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E j=N+1 = + γN
3(2N + 3)
Triple Triple
where B is the rotational constant, and the other constants de- 14 N N j 14 N N j
scribe: D is the centrifugal distortion, λ the spin-spin interaction, 5.0 5.0
and γ the spin-rotation. The spin angular momentum and the 5.0 5.0 6.0
5.0 4.0
rotational angular momentum are those already described and 5.0 5.0
discussed in the previous eq.5 and clearly involve the structural
12 12 5.0
characteristic of the involved molecular targets. In the present 5.0
5.0 6.0
4.0
study we omitted the inclusion of the much smaller centrifugal
distorsion D and the even smaller λ spin-spin interactions. Hence
we have included the primary rotational constants Be , given in
10 10
the previous section, and the spin-rotation coupling constants γ
obtained from the literature: Ganser et al. 37 and Curtis et al. 38 . 4.0 4.0
The lower-lying rotational energy levels when spin-rotation ef- 4.0 4.0 5.0
4.0 3.0 4.0 4.0
fects are included are given by Figure 6. As mentioned before, 8 8 4.0
E (cm−1)
due to their relative smallness, the centrifugal distortions have 4.0 5.0
4.0 3.0
been neglected in these calculations.
One clearly sees in Figure 6 that the ∆N6=0 and the ∆j6=0 transi-
tions involve larger energy gaps than those transitions were only 6 6
the spin S quantum number changes: spin-flip processes there- 3.0 3.0
3.0 3.0 3.0
fore involve much smaller energy transfers during inelastic col- 3.0 4.0
3.0 2.0 3.0
lisions, hence we shall not further discuss them for the present 3.0 4.0
3.0 2.0
study since they are expected to contribute only marginally to 4 4
state-changes induced by collision paths. This aspect of the dy-
namics has already been illustrated by us in our earlier work 39 on 2.0 2.0 2.0 2.0
similar molecules. We also see in Figure 6 that, by removing the 2.0 2.0 3.0
2.0 1.0 2.0 2.0 3.0
spin-rotational coupling which causes the energy splitting terms,
2 2 2.0 1.0
we could obtain an approximate picture for the rotational struc-
tures of the target molecules described as a pseudo-1 Σ cases, with 1.0 1.0 1.0 1.0
the corresponding simplification of the energy spacings reported 1.0 1.0 2.0 1.0 1.0 2.0
by the Figure given in the Supplementary Information, where we
0 0.0 1.0 0.0 0 0.0 0.0 1.0
cover a larger range of rotational levels. The validity of such a 0.0 1.0
1.0 0.0
recoupling scheme was recently tested by us for the Hydrogen
Molecular Ions (HMIs) in collision with He, see: Hernández Vera Fig. 6 Computed lower-lying rotational level spacings for the CNN and
et al. 40 and for the OH+ cation, also colliding with He atoms in: NCN systems . The columns on the left present the levels for the simpli-
González-Sánchez et al. 39 . In the following discussion we shall fied pseudo-1 Σ cases while the ones on the right show the correct spacings
for the 3 Σ cases.
verify once again this simplification and therefore decide to gen-
erate the necessary rate coefficients only for the pseudo-1 Σ case.
In order to check in our two systems the validity of the recou-
pling simplification, we need to treat the quantum dynamics for
a specified state |Fi jmi for each target molecule which interacts
with the He atom as a structureless partner. Hence we need to
generate the scattering eigenfunctions of the total angular mo-
mentum J, which describe the total collisional system, and which
can be written as in González-Sánchez et al. 39 :
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NCN 200 38 63
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40
4.1 Rotationally inelastic cross sections for 3 Σ− rotors 30
20
He + CNN
10
The calculations reported in the panels of the two four-panel Fig- 0
0 50 100 150 200
ures, which are given in the Supplementary information, are com- 120
0→2 0→4 0→6 0→8
100
paring the values of the inelastic cross sections calculated exactly 80
σ / Å2
40
30 He + NCN
20
two types of cross sections are essentially coincident and that to 10
0
implement the faster, and simpler, decoupling scheme for the dy- 0 50 100 150 200
Ecol / cm−1
namics yields for both radicals results which are practically indis-
tinguishable from the exact calculations. Such findings therefore
Fig. 7 Computed excitation cross sections from the ground rotational
confirm once more that it makes sense to carry out our production states (odd and even j values) for the CCN (upper Panel), NCN (middle
cross sections and inelastic rates for the rotational populations of and lower panels). See main text for further details.
the title molecules by using only the decoupling scheme.
The following comments can be made from a perusal of the
4.2 Rotationally inelastic cross sections for pseudo-1 Σ− ro- data in Figures 7 and 8:
tors (i) at all energies considered in the panels of Figure 7, but
We have therefore computed a broad range of state-to-state ro- especially from the data near thresholds, we see that the tran-
tationally inelastic cross sections for the title systems, employing sitions involving ∆ j=2 steps are systematically the largest cross
the exact Coupled-Channel (CC) method outlined in the previous sections, both for the even and odd j values, when in comparison
section 3 but treating the rotating molecules as simple linear ro- with processes involving both smaller and larger j changes. This
tors in their 1 Σ− pseudo-state without any coupling induced by behaviour is obviously linked to the different coupling strengths
the electronic spin discussed earlier. The values of the index for displayed in the previous Section 2 by the different multipolar
the multipolar coefficients included in the expansion potentials coefficients representing the original points of the PESs. Both of
described in the previous subsection went up to λ = 10 for the their interactions, in fact, indicated the λ = 2 term as having the
CNN radical and up to λ = 16/17 for the NCN radical. The num- strongest coupling range and therefore to be more efficient when
ber of coupled channels has been extended according to the in- involving transitions with ∆ j=2 processes.
volved collision energy, covering all available open channels. For (ii) the inelastic transitions displayed by the three panels of Fig-
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80 100000
70 0→1 1→2 2→3 3→4 5→4 5→1
60 10000 5→3 5→0
50 5→2
σ / Å2
40 1000
He + CNN
σ / Å2
30
20 100
10
10
0
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60 100000
10 → 8 10 → 2
40
He + NCN 10000 10 → 6 10 → 0
10 → 4
20 1000
0 100
σ / Å2
0 50 100 150 200
Open Access Article. Published on 25 October 2023. Downloaded on 10/26/2023 1:39:13 PM.
10
70
60 1→3 3→5 5→7 7→9 1
50 He + NCN
0.1
σ / Å2
40
30 He + NCN 0.01
20
10 0.0001 0.001 0.01 0.1 1 10 100
0
0 50 100 150 200 100000
11 → 9 11 → 3
Ecol / cm−1 10000 11 → 7 11 → 1
1000 11 → 5
σ / Å2
100
Fig. 8 Computed excitation cross sections from different initial rotational 10
states.The upper panel shows results with ∆ j=1 for the CNN radical, 1 He + NCN
while the middle panel reports the transitions with ∆ j=2 for the NCN 0.1
system (even j values). The same type of transitions but with odd j 0.0001 0.001 0.01 0.1 1 10 100
−1
values are shown by the bottom panel. See main text for further details. Ecol / cm
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−1 −1
0→1 0→3
s
0→2 0→4 energy gap values for the two molecules.
1
cm molec Different sets of inelastic rate coefficients are reported in the
two columns of data shown by Figure 11. In fact, we present
3
−10
He + CNN
0→2 0→6 tational states, and the ∆ j=1 or =2 transitions are considered,
s
0→4 0→8
1 we find that the corresponding rates decrease in value when the
cm molec
Open Access Article. Published on 25 October 2023. Downloaded on 10/26/2023 1:39:13 PM.
excitation moves up from the ground initial levels and are also
0.1
3
0.01 and lower panels in that Figure).Once more, the changing en-
He + NCN
k / 10
10
s
1→3 1→7
1→5 1→9 cooling) processes which are presented in the right column of
cm molec
1
the same Figure 11, as well as in the various panels of the two
0.1 columns in Figure 12. We compare processes which start from
3
He + NCN
k / 10
0.001
10 → 8 10 → 2 120 14 → 12 14 → 6
120 10 → 6 10 → 0 14 → 10 14 → 4
100 10 → 4 100 14 → 8
80
−1 −1
−1 −1
100 80 He + NCN
s
60
s
1 80 4→2 10 → 8
40
6→4 20
60 20
3
0 0 10 20 30 40 50 60 70 80
3
40 He + CNN 0 10 20 30 40 50 60 70 80
−12
T/K
0→1 2→3
k / 10
−10
20
k / 10−12 cm3 molec−1 s−1
0.1 0 10 20 30 40 50 60 70 80 11 → 9 11 → 3 13 → 11 13 → 5
120 120
0 10 20 30 40 50 T/K 100 11 → 7 11 → 1
100 13 → 9 13 → 3
11 → 5 13 → 7
80 80
−1 −1
−1 −1
60 60
s
2→0 8→6
120 40 40
cm molec
cm molecule
4→2 10 → 8
1 100 6→4 20 20
80
3
0.1 He + NCN 0 10 20 30 40 50 60 70 80 0 10 20 30 40 50 60 70 80
60
3
He + NCN
−12
2→4 6→8
k / 10
0.001 0 10 20 30 40 50 60 70 80
0 10 20 30 40 50 T/K Fig. 12 Left Column: de-excitation rate coefficients from three different
−1 −1
−1 −1
excited initial rotational states (odd and even j values) for the CCN (up-
s
10
s
per panel: from j=5), NCN (middle panel: from j=10 and lower panel
cm molec
1 5→3 11 → 9
100 7→5
0.1 He + NCN He + NCN from j=11) over the same range of temperature values as before.Right
3
80
3
0.01 1→3 5→7 Column:de-excitation rate coefficients from yet other initial excited ro-
−12
3→5 7→9
−10
60 tational states (odd and even j values) for the CCN (upper panel: from
k / 10
0.001
k / 10
0 10 20 30 40 50 0 10 20 30 40 50 60 70 80 j=10), NCN (middle panel: from j=14 and lower panel from j=13) over
T/K T/K
the same range of temperature values as before.
Fig. 11 Left Column: excitation rate coefficients from a variety of initial
rotational states (odd and even j values) for the CCN (upper Panel), NCN Several specific considerations could be made from a perusal
(middle and lower panels) over the same range of temperature values as of the data reported in the various columns of these figures. If
in Figure 10. Right Column: de-excitation (cooling) rate coefficients
we start from the three panels on the right in Figure 11, we fo-
from several initial rotational states (odd and even j values) for the CCN
(upper panel), NCN (middle and lower panels) the range of temperature cus there on de-excitation processes involving ∆ j=-2 transitions
values is up to 80 K. from a variety of initial levels up to j=10 and j=11 excited initial
states. We see there that cooling transitions from the higher ex-
cited rotational states are now producing in all cases the largest
radicals (reported by Figure 10), we clearly see that all the rate rates, both for the CNN radical (upper panel) and the NCN rad-
coefficients pertaining to excitation processes with ∆ j=2 transi- ical reported in the next two panels. Since the energy ladder
tions are uniformly the largest ones. Furthermore, in the T range of the involved levels (given in the previous Figure 6) showed
above 10 K all the largest rates are very similar in size for all three that the energy gaps become larger as j increases, the collisional
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20
60
4.4 Assessing state-changing efficiency from collisional 40
pathways 20 He + NCN
0
−1 −1
1 2 3 4 5 6 7 8 9 10
s
He + CNN 60
cm molecule
1 T = 20 K
50 T = 100 K
40 T = 200 K
∆j = 2 excitations
3
30
0.1 j → j’ = j + 2
20
−10
He + CNCN
T = 10 K T = 20 K T = 50 K
10
k / 10
0 1 2 3 4 5 6 7 8 9 10 0
j 1 2 3 4 5 6 7 8 9 10
−1 −1
|j−j’|
s
He + NCN
cm molecule
1 Fig. 14 Comparing de-excitation rates from the initial level of j=10 for
the present molecules (top and middle panels) and for the CNCN from
ref. 2 (bottom panel). Different T values are shown in the various panels
3
0.1 and are labeled with different colours. See main text for further details.
−10
k / 10
0 1 2 3 4 5 6 7 8 9 10
j
0.3991 cm−1 for NCN and 0.4375 cm−1 for CNN, which are
−1 −1
s
1 The data shown by the three panels of the first of them, i.e.
Figure 13, present excitation processes involving the two radicals
3
0.1
of this study in the upper and middle panels and the already pub-
−10
lished data for the NCCN radical in the bottom panel of that Fig-
k / 10
10 | J
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−1 −1
60 ∆j = −1
(ii) the temperature dependence of the ’cooling’ processes we
s
∆j = −2 are considering now indicates that the collisional de-excitation
50
cm molecule
∆j = −3
40 ∆j = −4 He + CNN paths are more efficient the lower the T regime one is considering
∆j = −5
30 and decrease uniformly at higher T values, a feature related once
3
−12
90
s
80 T = 50 K solid ure 14. On the other hand, the same quantities for the CNCN
T = 80 K dashed
cm molecule
30
20 two bio-fragments which are the object of the present study can
−12
10
k / 10
40 T = 100 K dotdashed
The results reported in the three panels of Figure 15 addition-
cm molecule
35
30 ally present an analysis of the de-excitation paths which compares
25 He + CNCN
20 the present radicals with the CNCN cyano-derivative of a previ-
3
15
10 ous study 2 . Five different state-changing processes are shown
−12
0
0 1 2 3 4 5 6 7 8 9 10 ments could be made:
j
(i) the largest de-excitation rate coefficients stem from ’cool-
Fig. 15 Comparing cooling processes over a range of initial rotational ing’ paths involving ∆ j=-2 transitions for the CNN radical and
states and for five different values of the -∆ j variation. The top two panels for the NCN radical. All the other processes involving different
report data for the present molecules while the bottom panel comes from values of ∆ j show invariably smaller collisional efficiency. Thus,
the CNCN derivative studied in ref. 2 . Two different temperature values the dominant efficiency of that direct rotational coupling term of
are reported for the present molecules while only one is available for the
their potentials is confirmed;
CNCN. See main text for further details.
(ii) in the case of the CNCN molecule, on the other hand, we
see both transitions with ∆ j=-1 and -2 are comparable in size and
only surmised , it stands to reason to suggest that our systems, show the largest rate coefficient values. Such values, on the other
if further searched, could become observationally available and hand, are again about 50% smaller than those shown in the upper
should follow a similar non-LTE behaviour as that indicated for panels by the present radical molecules;
the NCCN radical 42 . (iii) the results in the top two panels also show that the tem-
Comparisons between computed data are further reported in perature effects around the two values examined are rather neg-
the three panels of Figure 14 for the same three molecules dis- ligible and the relative cooling efficiency remain largely the same
cussed in previous figure 15. We are showing a series of de- at the two temperatures.
excitation processes which all initiate from the excited rotational In conclusion, our present calculations indicate that both title
state of j=10 and report rate coefficients at four different tem- radicals exhibit rather efficient rotational state-changing proba-
perature values. The top and middle panels show our present bilities from collision with He atoms and therefore are likely to
calculations for the CNN and the even- j levels of NCN, while the be present in the ISM environments in some of their rotation-
bottom panel compares our results with those obtained in Ref. 2 ally excited levels, from which radiative emissions can occur and
for the cyano-derivative CNCN. The following considerations can probably be sighted.
be made:
5 Present Conclusions
(i) the rapid oscillations of the relative efficiency among state-
changing processes confirm once more that the cooling transitions In the work reported here we have discussed in some detail the
which yield the largest rate coefficient values correspond to the inelastic dynamics of two important cyanogen-related molecules,
largest energy release during the de-excitation paths. Differences believed to provide the molecular backbones of several systems
however exist between systems: the top panel shows oscillatory considered to be precursors to bio species in the ISM. We pro-
behaviour between even- and odd- j values for the CNN system, vide computational evidence on how such molecules could ex-
indicating once more the importance of ∆ j=-2 coupling dynam- ist in rotationally excited internal states by undergoing efficient
ics, while the middle panel exhibits uniform decrease for the NCN collisions with the He atoms, abundant component of the same
system where all transitions obey the ∆ j=-2 selection rule. The environment. Such data, obtained from accurate quantum dy-
decrease in size as the ∆ j increases is most rapid in the bottom namics, could also be employed in principle to estimate the same
panel for the CNCN molecule where no such selection rule ap- rate coefficients, but for the H2 molecular partner, by usings scal-
plies; ing procedures already present in the current literature Gianturco
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Data Availability
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