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Phytochemistry xxx (2016) xxx–xxx

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Phytochemistry
journal homepage: www.elsevier.com/locate/phytochem

Functional characterisation of a tropine-forming reductase gene from


Brugmansia arborea, a woody plant species producing tropane alkaloids
Wei Qiang a, Ke Xia a, Qiaozhuo Zhang a, Junlan Zeng a, Yuanshe Huang b, Chunxian Yang a, Min Chen c,
Xiaoqiang Liu a, Xiaozhong Lan d, Zhihua Liao a,⇑
a
Key Laboratory of Eco-environments in Three Gorges Reservoir Region (Ministry of Education), SWU-TAAHC Medicinal Plant Joint R&D Centre, School of Life Sciences,
Southwest University, Chongqing 400715, China
b
College of Agronomy, Anshun University, Anshun 561000, China
c
SWU-TAAHC Medicinal Plant Joint R&D Centre, College of Pharmaceutical Sciences, Southwest University, Chongqing 400715, China
d
TAAHC-SWU Medicinal Plant Joint R&D Centre, Agricultural and Animal Husbandry College, Tibet University, Nyingchi of Tibet 860000, China

a r t i c l e i n f o a b s t r a c t

Article history: Brugmansia arborea is a woody plant species that produces tropane alkaloids (TAs). The gene encoding
Received 4 October 2015 tropine-forming reductase or tropinone reductase I (BaTRI) in this plant species was functionally charac-
Received in revised form 1 March 2016 terised. The full-length cDNA of BaTRI encoded a 272-amino-acid polypeptide that was highly similar to
Accepted 8 March 2016
tropinone reductase I from TAs-producing herbal plant species. The purified 29 kDa recombinant BaTRI
Available online xxxx
exhibited maximum reduction activity at pH 6.8–8.0 when tropinone was used as substrate; it also exhib-
ited maximum oxidation activity at pH 9.6 when tropine was used as substrate. The Km, Vmax and Kcat
Keywords:
values of BaTRI for tropinone were 2.65 mM, 88.3 nkat mg1 and 2.93 S1, respectively, at pH 6.4; the Km,
Brugmansia arborea
Solanaceae
Vmax and Kcat values of TRI from Datura stramonium (DsTRI) for tropinone were respectively 4.18 mM,
Tropane alkaloids 81.20 nkat mg1 and 2.40 S1 at pH 6.4. At pH 6.4, 6.8 and 7.0, BaTRI had a significantly higher activity
Tropinone reductase I than DsTRI. Analogues of tropinone, 4-methylcyclohexanone and 3-quinuclidinone hydrochloride, were
Enzymatic kinetics also used to investigate the enzymatic kinetics of BaTRI. The Km, Vmax and Kcat values of BaTRI for tro-
Tissue profile pine were 0.56 mM, 171.62 nkat.mg1 and 5.69 S1, respectively, at pH 9.6; the Km, Vmax and Kcat values
of DsTRI for tropine were 0.34 mM, 111.90 nkat mg1 and 3.30 S1, respectively, at pH 9.6. The tissue pro-
files of BaTRI differed from those in TAs-producing herbal plant species. BaTRI was expressed in all exam-
ined organs but was most abundant in secondary roots. Finally, tropane alkaloids, including hyoscyamine,
anisodamine and scopolamine, were detected in various organs of B. arborea by HPLC. Interestingly,
scopolamine constituted most of the tropane alkaloids content in B. arborea, which suggests that B.
arborea is a scopolamine-rich plant species. The scopolamine content was much higher in the leaves
and stems than in other organs. The gene expression and TAs accumulation suggest that the biosynthesis
of hyoscyamine, especially scopolamine, occurred not only in the roots but also in the aerial parts of B.
arborea.
Ó 2016 Elsevier Ltd. All rights reserved.

1. Introduction antagonist exhibiting a spectrum of pharmacological effects simi-


lar to that of hyoscyamine (7). Although less potent, anisodamine
Solanaceae plants produce pharmaceutical tropane alkaloids (8) is less toxic than hyoscyamine (7) and has consequently gar-
(TAs), including hyoscyamine (7), anisodamine (8) and scopo- nered increasing research interest (Poupko et al., 2007). Moreover,
lamine (9) (Fig. 1). Hyoscyamine (7) and scopolamine (9) (Fig. 1) scopolamine (9) exhibits a higher commercial value than the afore-
are widely known for their anticholinergic properties and are mentioned compounds and has approximately a 10 times greater
widely used for pain relief, anaesthesia, and for the treatment of market demand due to its higher pharmacological activity and
drug addiction, motion sickness and Parkinson’s disease (Wang fewer side effects (Hashimoto et al., 1993; Oksman-Caldentey,
et al., 2011). Anisodamine (8) is also a non-specific cholinergic 2007). However, scopolamine (9) yield from plants is commonly
lower than that of hyoscyamine (7). Due to difficulties and high
⇑ Corresponding author at: School of Life Sciences, Southwest University, cost of industrial synthesis, these alkaloids continue to be
Chongqing 400715, China. extracted from several species of Solanaceae, including those from
E-mail addresses: zhliao@swu.edu.cn, zhihualiao@163.com (Z. Liao). the genera Datura, Duboisia, Hyoscyamus and Atropa. Given the

http://dx.doi.org/10.1016/j.phytochem.2016.03.008
0031-9422/Ó 2016 Elsevier Ltd. All rights reserved.

Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
2 W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx

acutangulus significantly enhanced the content of hyoscyamine (7)


and greatly improved the production of scopolamine (9), indicating
that TRI is a promising target for genetic engineering to increase
TAs production in plants or in vitro cultures (Kai et al., 2009;
Richter et al., 2005).
The biosynthesis of TAs has been extensively and intensively
studied at the molecular and biochemical levels in many herbal
plant species, including in D. stramonium (Nakajima et al., 1998;
O’Hagan and Robins, 1998), H. niger (Li et al., 2006; Nakajima
and Hashimoto, 1999) and A. belladonna (Bedewitz et al., 2014).
However, TAs biosynthesis has not yet been studied in arborous
plant species. Although all TAs-producing plants rely on the same
TAs biosynthetic pathway, the regulation of genes and biochemi-
cal features of enzymes differ by species (Moyano et al., 2003).
For example, putrescine N-methyltransferase is the committed-
step enzyme involved in TAs biosynthesis in H. muticus
(Moyano et al., 2003) but not A. belladonna (Rothe et al., 2003).
The biosynthesis, accumulation and regulation of TAs in arborous
plants may be distinct and constitute an interesting subject of
study. Brugmansia arborea, previously named Datura arborea
according to Flora Reipublicae Popularis Sinicae, is the perennial
arborous TA-producing plant species and belongs to the Solana-
ceae family. This species has very high biomass, and the entire
plant is abundant in alkaloids, although the molecular and bio-
chemical identification of TAs biosynthetic genes in B. arborea
have rarely been studied. In the present study, the cDNA of TRI
from B. arborea (namely BaTRI) was isolated, the tissue profiles
of BaTRI gene and TAs were determined, and the biochemical fea-
tures of this enzyme were functionally characterised based on the
purified recombinant protein from E. coli. This research will
improve our understanding of the biosynthesis and regulation
of TAs in different botanical systems, provide a useful candidate
for the metabolic engineering of TAs biosynthesis in this plant
species, and simultaneously help to exploit new resources to
meet the increasing demand for scopolamine (9).

2. Results and discussion

2.1. Gene cloning and sequence analysis

A pair of degenerate primers was designed based on the align-


Fig. 1. The biosynthetic pathway to tropane alkaloids in the Solanaceae and ment of the TRI nucleotide sequences of D. stramonium and D.
flowering plants of Brugmansia arborea (Photographed by Min Li, Plant Photo Bank
innoxia, two herbaceous species belonging to the same genus of
of China). TRI, Tropinone reductase I; TRII, Tropinone reductase II; PMT, Putrescine
N-methyltransferase; H6H, Hyoscyamine-6b-hydroxylase. Datura, which also includes B. arborea, to carry out PCR amplifica-
tion using a cDNA library of B. arborea roots as a template. This
reaction resulted in an 819-bp fragment with high sequence
increasing demand for herbal medicine, new resources for sec- homology to D. stramonium TRI. 50 RACE and 30 RACE with gene-
ondary metabolite extraction need to be investigated (Dehghan specific primers yielded two 133-bp and 364-bp PCR products,
et al., 2013). respectively. The three PCR product sequences were assembled
Two tropinone reductases (TRs) constitute an important branch to generate a 1138-bp cDNA that was physically confirmed by
point in the TA biosynthetic pathway. Tropinone reductase I or tro- two gene-specific primers, F-BaTRI-full and R-BaTRI-PRO. The
pine-forming reductase (TRI; EC 1.1.1.206) reduces tropinone (5) to full-length BaTRI cDNA contained a 819-bp coding sequence,
tropine (6) during TAs biosynthesis, whereas tropinone reductase II which encodes a polypeptide of 272 amino acid residues with a
(TRII; EC 1.1.1.236) reduces tropinone (5) to pseudotropine (10), calculated molecular mass of 29.70 kDa and theoretical isoelectric
diverging metabolic flux to nortropane calystegine A3 (11) point (pI) of 5.79. The deduced protein sequence exhibited the
(Nakajima et al., 1993) (Fig. 1). TRI belongs to the family of short highest sequence identity with TRIs from D. stramonium (95%,
chain dehydrogenases/reductases (SDRs) that catalyse NAD(P) accession number P50162) and D. innoxia (95%, accession number
(H)-dependent redox reactions and TRI activity controls metabolic KJ676865), followed by TRI from A. belladonna (90%, accession
flux towards hyoscyamine (7) and downstream TAs biosynthesis number AFP55030). As expected, it exhibited evidently lower
(Drager, 2006). The genes encoding TRI have been cloned and func- sequence identity with pseudotropinone-forming tropione reduc-
tionally identified in several herbal plant species, including Datura tases (TRIIs) from other Solanaceous plants, such as A. belladonna
stramonium (Nakajima et al., 1993), Hyoscyamus niger (Nakajima TRII (accession number AGH24753, 63%) and A. luridus TRII (acces-
et al., 1999b), Anisodus acutangulus (Kai et al., 2009), Withania coag- sion number AGL76990, 63%). Thus, the cloned gene was named B.
ulans (Kushwaha et al., 2013a) and Withania somnifera (Kushwaha arborea tropinone reductase I (BaTRI) and deposited in the NCBI
et al., 2013b). Overexpression of the TRI gene in A. belladonna and A. database with accession number KJ676866.

Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx 3

Multiple alignments of BaTRI amino acid sequence with other (Nakajima et al., 1999a). Eleven amino acids (Val110, His112,
characterised TRIs are shown in Fig. 2. Like other members of the Ile159, Ala160, Leu165, Val168, Val203, Leu208, Val209, Ile223
SDR superfamily, BaTRI shared a conserved TGXXXGXG motif and Phe226) were predicted to be in contact with the tropinone
involved in NADPH binding (Oppermann et al., 2003), the NNAG (5) substrate (Nakajima et al., 1998), and site-directed mutagenesis
motif of SDRs (Oppermann et al., 2003) and the catalytic tetrad of various residues of TRs established that five residues (His112,
motif (N-S-Y-K) of TRs (Filling et al., 2002), among which the tyro- Ala160, Val168, Ile223 and Phe226) contributed to the sterospeci-
sine residue is considered essential for the catalytic activity of TRs ficity of the respective TRIs (Nakajima et al., 1999a). All residues

Fig. 2. Comparison of tropinone reductase-I from B. arborea (BaTRI) with other known tropinone reductases via a multiple sequence alignment. Identical amino acids are
shown in white on a black background, and the conserved amino acids are shown in black on a grey background. Blue-decorated residues in blue boxes are involved in NADPH
binding. Red highlights denote residues conserved in SDRs. Eleven yellow highlighted residues participate in tropinone (5) binding. A red box designates the signature YXXXK
motif of short chain dehydrogenases/reductases (SDR), and sequences highlighted in green denote a catalytic tetrad. (For interpretation of the references to colour in this
figure legend, the reader is referred to the web version of this article.)

Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
4 W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx

were conserved at analogous positions in BaTRI. Thus, a bioinfor- whereas seven residues of BaTRI and DsTRI, i.e., His112, Ile159,
matics analysis suggested that the cloned BaTRI was a functional Ala160, Leu165, Val168, Ile223 and Phe226, were substituted by
TRI enzyme that catalyses the reduction of tropinone (5) to tropine Tyr100, Val147, Ser148, Val153, Glu156, Leu210 and Leu213,
(6). respectively, in DsTRII. These structural features implied again that
The phylogenetic analysis revealed that BaTRI and other TRIs BaTRI may represent a functional form of TRI.
from Solanaceous plants were grouped in the same TRI cluster
(group I). BaTRI exhibited close phylogenetic proximity to D. stra- 2.2. Purification of the recombinant BaTRI
monium TRI and D. innoxia TRI, which coincided with the fact that
these species have a closer relationship (Fig. 3). Naturally, all TRIIs The coding region of BaTRI was subcloned into the protein
from Solanaceous plants were assembled into the TRII cluster expression vector pET28a and then overexpressed in E. coli Rosetta.
(group II). Putative TRs or SDR-like proteins from plants outside After induction for 6 h by IPTG, the soluble fraction of lysed bacte-
of Solanaceae, such as AtTRI, VvTRI and CoTRI, constituted a third ria was collected. The enzyme assay demonstrated that the super-
cluster (group III). CoTRI and DnTRI were the only members of natant exhibited tropinone reductase I activity, suggesting that
group III that had been functionally validated to exhibit tropinone recombinant BaTRI was functionally expressed. Thus, a Ni+–NTA
(5) reduction activity, but their characteristics significantly dif- affinity chromatography column was adopted to purify His-tagged
fered from those of Solanaceous TRIs (Brock et al., 2008; Chen recombinant BaTRI. On the SDS–PAGE gel, the molecular weight of
et al., 2013). the purified recombinant BaTRI was approximately 29 kDa, which
A 3-dimensional (3D) molecular model of BaTRI was con- was consistent with the calculated molecular weight of BaTRI. The
structed by using the DsTRI crystal structure (1ae1. pdb) as a tem- molecular weight of the recombinant BaTRI was similar to those of
plate to comparatively analyse the substrate-binding pocket of DsTRI (Nakajima et al., 1999a) and HnTRI (Nakajima and
BaTRI with that of DsTRI, which shared 95% sequence identity with Hashimoto, 1999) (Fig. 4).
BaTRI. The predicted structure had a deep cleft between the core
structure and a small lobe, which constituted a binding pocket 2.3. Enzymatic activities of BaTRI at different pH conditions
involved in contacting tropinone (5) (Nakajima et al., 1998).
Among the pocket, five amino acids critical for the stereospecificity The optimal pH value for the activity of BaTRI was screened
of the reaction mentioned above were conserved at the corre- (Fig. 5). For the reduction activity or forward reaction, BaTRI exhib-
sponding positions of BaTRI (Fig. S1. 1A and B). An alignment anal- ited optimal catalytic velocities over a relatively broad pH range of
ysis of the active site environments of BaTRI, DsTRI (1ae1.pdb) and 6.8–8.0, and its activity was highest at pH 8.0. By contrast, Solana-
DsTRII (1ipf.pdb) showed strong homology between BaTRI and ceae TRIs were previously reported to exhibit significant catalytic
DsTRI and significant variation between BaTRI and DsTRII activity over a relatively narrow pH range, although the optimum
(Fig. S1. 1C). BaTRI could be perfectly superimposed onto DsTRI, pH values for HnTRI (Hashimoto et al., 1992), StTRI (Kaiser et al.,

Fig. 3. Phylogenetic relationship of BaTRI with other plant TRs. The tree was constructed with maximum likelihood method in MEGA4.1 using sequences from Datura innoxia
TRI (KJ676865), Datura stramonium TRI (AAA33281.1), Hyoscyamus niger TRI (BAA85844.1), Anisodus acutangulus TRI (ACB71202.1), Withania coagulans TRI (AGB56644.1),
Solanum tuberosum TRI (CAC34420.1), Datura stramonium TRII (AAA33282.1), Hyoscyamus niger TRII (AAB09776.1), Solanum tuberosum TRII (CAB52307.1), Anisodus
acutangulus TRII (ACB71203.1), Dendrobium nobile TRI (AFD23287.1), Hordeum vulgare (BAJ87177.1), Oryza sativa (ABF95192.1), Zea mays (ACG34080.1), Dendrobium nobile
TRII (AFD23289.1), Glycine max (XP_003552795.1), Populus trichocarpa (EEE95485.1), Vitis vinifera (XP_002282554.1), Arabidopsis lyrata (ABW81053.1), Arabidopsis
cebennensis (ABW81184.1), Boechera divaricarpa (ABW74581.1), Arabidopsis thaliana (AAM10204.1), and Cochlearia officinalis (CAO02390.1) along with the BaTRI sequence.

Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx 5

Fig. 4. SDS–PAGE analysis of affinity-purified His-tagged recombinant BaTRI. IPTG-induced cells were sonicated and then subjected to centrifugation. The supernatant
(soluble fraction) was collected and loaded on a Ni++–NTA affinity column to purify the His-tagged recombinant BaTRI. The fraction flowing through the affinity column and
the elutes of imidazole gradient elution (concentration gradient of 50 mM, 100 mM, 150 mM, and 200 mM) were resolved on a 12% SDS–PAGE gel. The gel was stained with
Coomassie brilliant blue R-250. M, protein molecular weight marker. Arrows indicate the band corresponding to recombinant BaTRI protein.

As expected, BaTRI efficiently catalysed the reverse reaction, i.e.,


the oxidation of tropine (6) to tropinone (5), within a narrow alka-
line pH range. The optimum pH was 9.6, which agreed with that
(pH 9.9) reported for the tropine-oxidation activity of the TRI iso-
lated from D. stramonium (Portsteffen et al., 1994). The high alka-
line pH optima favour the formation of the uncharged substrate,
tropine (6), the pKa of which is 10.8 (Drager, 2002). However, TRI
from H. niger exhibited maximum activity at a lower pH of 7.6
for tropine (6) oxidation (Hashimoto et al., 1992). Recently, the
reverse reaction activities of TRIs have also been reported for two
other Solanaceae plants, Withania coagulans (Kushwaha et al.,
2013a) and W. somnifera (Kushwaha et al., 2013b), but the opti-
mum pH values were not determined. Unlike TRI from D. stramo-
nium, which exhibited similar reduction and oxidation activities
(the Vmax of tropine (6) oxidation at pH 9.9 was 6.2 nkat mg1
protein, and the Vmax of tropinone (5) reduction at pH 6.4 was
7.1 nkat mg -1 protein), BaTRI exhibited a significantly higher tro-
pine (6) oxidation activity (121 nkat mg1 protein) at pH 8.0 than
Fig. 5. Effect of pH on catalytic activity of BaTRI for both reduction and oxidation tropinone (5) reduction activity (87 nkat mg1 protein) at pH 9.6.
reaction of tropinone (5) and tropine (6) using NADPH and NADP+, respectively.
Notably, the high oxidation activity in vitro may not be recapitu-
Each point is the mean of triplicate assays.
lated in vivo in the cytoplasm, where the physiological pH is
weakly acidic and outside the pH range of tropinone (5) oxidation
activity. Thus, in planta, BaTRI is highly oriented in favour of the
2006), WcTRI (Kushwaha et al., 2013a), WsTRI (Kushwaha et al.,
forward reaction (tropine (6) formation). Thus, the enzymatic reac-
2013b) and DsTRI (Nakajima et al., 1999a), tended to be acidic or
tion is likely irreversible, as observed in W. coagulans (Kushwaha
neutral, i.e., 6.1, 6.4, 6.6, 6.7 and 7.0, respectively. Interestingly,
et al., 2013a) and W. somnifera (Kushwaha et al., 2013b).
the optimum pH of BaTRI, i.e., pH 8.0, was identical to that of
another TR, namely CoTR, which was isolated from Cochlaeria offic-
inalis (Brock et al., 2008), a cruciferous plant that produces tropane 2.4. Enzymatic kinetics of BaTRI
esters. CoTR is a non-specific TR that can act both as a TRI and TRII
and is consequently considered a possible ancestor of specialised To understand the enzymatic kinetics of BaTRI, purified recom-
TRs (TRI and TRII). In fact, only uncharged substrates have been binant BaTRI was incubated with NADPH and each of the three dif-
suggested to be accepted by TRIs (Portsteffen et al., 1994). Thus, ferent substrates, the natural substrate tropinone (5) and two
for tropinone (5), with pKa 8.9 (Drager, 2002), a high pH close to structural analogues of tropinone (3-quinuclidinone hydrochloride
8.9, where more tropinone (5) was uncharged, could confer TRI and 4-methylcyclohexanone), and the forward reaction was
high affinity and possible high activity. In brief, a wide range of allowed to proceed at pH 6.4. The assay pH was set to 6.4 to enable
environments, from weakly acidic to weakly alkaline, could be a direct comparison with the reported DsTRI of D. stramonium. The
suitable for the optimal reduction activity of TRI. reverse reaction was also studied by incubating BaTRI with NAD+

Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
6 W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx

and tropine (6) at the optimum pH of 9.6. The Michaelis–Menten deprotonated fractions can be bound by BaTRI, as is discussed
curves of the enzyme for the four substrates were drawn to deter- above with respect to the optimum pH.
mine the Km values and Vmax values of the enzyme for the sub- A comparison of the enzymatic kinetics of BaTRI with DsTRI, a
strates (Fig. 6), and turnover rate (Kcat values) and catalytic counterpart isolated from D. stramonium which has a close rela-
efficiency (Kcat/Km values) were deduced from the Km values tionship with B. arborea, established that the affinity of BaTRI for
and Vmax values. All enzymatic kinetics parameters are listed in tropinone (5) was twice as low (Km = 2.65 mM) as that of DsTRI,
Table 1. The reduction velocity (Vmax) and affinity (Km) of BaTRI but the turnover was twice as high as that of native DsTRI
to tropinone were 88.3 ± 1.81 nkat mg1 and 2.65 ± 0.19 mM, (Vmax = 88.3 nkat mg1) (Km = 1.3 mM, Vmax = 43 nkat mg1)
respectively, notably faster and stronger than those of 3-quinu- (Portsteffen et al., 1994), indicating the same catalytic efficiency
clidinone hydrochloride but significantly slower and weaker than at pH 6.4. In fact, the pH optimum of 6.4 for DsTRI activities was
those of 4-methylcyclohexanone. The Kcat values and Kcat/Km val- below the optimal pH range of 6.8 to 8.0 for BaTRI activity. Further-
ues corroborated these findings. Noticeably, compared with the more, for Solanaceae TRIs, the Km values for substrates containing
reduction of tropinone (5), BaTRI exhibited a faster oxidation proton-accepting nitrogen considerably decreased at less acidic
velocity (171.62 ± 5.42 nkat mg1) and stronger affinity conditions (Kaiser et al., 2006; Portsteffen et al., 1994), which
(0.56 ± 0.04 mM) to tropine (6), with 10-fold higher Kcat/Km val- was also discussed above. To experimentally compare the catalytic
ues (10160.71 s1 M1) than that (1105.66 s1 M1) of tropinone efficiency between BaTRI and DsTRI at pH 6.4 and validate that
at pH 9.6. This result confirms that BaTRI is a functional enzyme BaTRI might have a higher activities at pH above 6.4 than DsTRI,
that catalyses a reversible reaction in vitro, but the real enzyme the recombinant TRI from D. stramonium was purified (Fig. S3)
activity should be considered to depend on physiological pH condi- and the enzyme kinetics of DsTRI for tropinone (5) reduction and
tions, as mentioned above. tropine (6) oxidation were determined under the same experimen-
3-Quinuclidinone hydrochloride and 4-methylcyclohexanone tal condition as BaTRI. Michaelis–Menten curves of the enzyme for
are typical structural analogues of tropinone (5) representing the two substrates (tropinone (5)/tropine (6)) were shown in
monocyclic and bi-cyclic substrates (Fig. S2), respectively, and Fig. S4 and enzymatic kinetics parameters were listed in Table 2.
these compounds are widely used to test the substrate specificity For tropinone (5) reduction at pH 6.4, both its affinity
of TRs (Brock et al., 2008; Chen et al., 2013). TRs from C. officinalis (Km = 4.18 mM) and reduction velocity (Vmax = 81.20 nkat mg1)
(Brock et al., 2008) and Dendrobium nobile (Chen et al., 2013) exhi- of DsTRI were lower and slower than those of BaTRI, so the cat-
bit higher reduction velocities for monocyclic ketones than for bi- alytic efficiency of DsTRI (574 s1 M1) was half of that of BaTRI.
cyclic substrates. Solanaceae TRs, particularly pseudotropine-form- For tropine (6) oxidation at pH 9.6, the affinity of DsTRI for tropine
ing reductases (Drager, 2006), and BaTRI also exhibit this property. (6) was higher (Km = 0.34 mM) but the oxidation velocity
At the assay pH of 6.4, the non-ionizable substrate 4-methylcyclo- (Vmax = 111.9 nkat mg1) was slower than those of BaTRI, showing
hexanone is uncharged, whereas the nitrogen-containing sub- similar catalytic efficiency (9705.88 s1 M1) to that of BaTRI.
strates tropinone (5) and 3-quinuclidinone hydrochloride are Enzyme activities of tropinone (5) reduction with tropinone (5)
positively charged. Thus, as expected, BaTRI exhibited significantly concentration of 5 mM at pH 6.4, 6.8 and 7.0 indicated that BaTRI
higher apparent affinity for 4-methylcyclohexanone than tropi- had significantly higher activity than DsTRI (Fig. 7). DsTRI has been
none (5) and 3-quinuclidinone hydrochloride, of which only the reported to be an effective gene to enhance TAs synthesis, since its

Fig. 6. Michaelis–Menten curves for the NADPH-dependent reduction reaction of tropinone (5) (A), 3-quinuclidinone hydrochloride (B), 4-methylcyolohexanone (C) and
NADP+-dependent oxidation reaction of tropine (6) (D) catalysed by BaTRI. The buffer for the reduction reaction was potassium phosphate (0.1 M, pH 6.4), and the buffer for
the oxidation was glycine–NaOH (0.1 M, pH 9.6). Each point is the mean of triplicate assays.

Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx 7

Table 1
Kinetic parameters of BaTRI-catalysed reaction. The data represent means of three independent measurements ± SD. The Km and Vmax were calculated from the Michaelis–
Menten equation with a non-linear regression. The Kcat value was calculated by dividing Vmax by Et (the number of enzymes in each assay).

Substrate pH assay Km (mM) Vmax (nkat mg1 protein) Kcat (s1) Kcat/Km (s1 M1)
Tropinone (5) 6.4 2.65 ± 0.19 88.30 ± 1.81 2.93 ± 0.06 1105.66
4-methylcyclohexanone 6.4 0.46 ± 0.04 140.91 ± 7.23 4.67 ± 0.24 10152.17
3-quinuclidinone hydrochloride 6.4 5.17 ± 0.29 16.26 ± 0.54 0.54 ± 0.02 104.45
Tropine (6) 9.6 0.56 ± 0.04 171.62 ± 5.42 5.69 ± 0.18 10160.71

Table 2
Kinetic parameters of DsTRI-catalysed reaction. The data represent means of three
independent measurements ± SD. The Km and Vmax were calculated from the
Michaelis–Menten equation with a non-linear regression. The Kcat value was
calculated by dividing Vmax by Et (the number of enzymes in each assay).

Substrate pH Km (mM) Vmax Kcat (s1) Kcat/Km


assay (nkat mg1 (s1 M1)
protein)
Tropinone 6.4 4.18 ± 0.51 81.20 ± 3.61 2.40 ± 0.11 574.16
(5)
Tropine 9.6 0.34 ± 0.05 111.90 ± 5.41 3.30 ± 0.16 9705.88
(6)

Fig. 8. Real-time PCR-based comparison of the expression of BaTRI in different


tissues of B. arborea.

Herbal plant species, such as A. belladona, D. metel and H. niger, bio-


logically synthesize tropane alkaloids in the secondary roots, in
which TAs-biosynthetic genes, such as TRI and H6H, are specifically
expressed (Pramod et al., 2010; Suzuki et al., 1999). The tissue
expression profile showed that expression of BaTRI was organ inde-
pendent. Although this expression pattern significantly differed
Fig. 7. Comparison of the catalytic activities between BaTRI and DsTRI for tropinone
from tissue profiles of TRI genes from other TAs-producing herbal
(5) reduction at pH 6.4, pH 6.8 and pH 7.0. Concentration of tropinone (5) was plant species, such as in H. niger (Nakajima and Hashimoto,
5 mM. The data represent means of three independent measurements. Bars with 1999) and A. belladonna (our unpublished data), the constitutive
asterisks are significantly different (t test, P < 0.01). expression of TRI transcripts has become a developing concept
given several very recent similar reports (Chen et al., 2013;
Cheng et al., 2013; Dehghan et al., 2013; Kai et al., 2009). Higher
overexpression in A. belladonna increased the production of hyos-
BaTRI transcript levels in the secondary roots and lower differential
cyamine (7) and scopolamine (9) by 3- and 5-fold, respectively
expression in other organs suggested that TAs are mainly synthe-
(Richter et al., 2005). Thus, BaTRI may be a promising target for
sized in the secondary roots of B. arborea, and other plant organs
genetic engineering to increase TAs synthesis in plants, and we will
might also contribute to TAs biosynthesis.
attempt to over-express this gene in TAs-producing plants in our
The reduction of tropinone (5) catalysed by TRI is a key step at
future work to verify its function.
the midpoint of TAs biosynthesis that competes for substrates with
pseudotropine-forming TRII and regulates the metabolic flux into
2.5. Tissue profile of BaTRI and TAs accumulation downstream hyoscyamine (7), anisodamine (8) and scopolamine
(9) biosynthesis pathways. Thus, the accumulation profile of the
The relative expression levels of BaTRI were detected in differ- three alkaloids corresponding to the BaTRI expression profile in
ent organs, including primary roots, secondary roots, mature the corresponding organs of B. arborea was detected (Fig. 9). Scopo-
stems, young stems, mature leaves and young leaves, using real- lamine (9) was consistently the predominant alkaloid in all the
time quantitative PCR. As shown in Fig. 8, the tissue profile analysis tested organs, with highest contents in mature leaves
showed that BaTRI was expressed in all examined organs, but at (1.55 mg g1), young leaves (1.47 mg g1) and mature stems
different levels. Secondary roots exhibited the highest BaTRI (1.43 mg g1) (these three levels did not significantly differ), fol-
expression of all measured organs, and the expression level of lowed by the young stems (0.78 mg g1) and primary roots
BaTRI in the secondary roots was twofold higher than that in pri- (0.76 mg g1), and the lowest contents in the secondary roots
mary roots and mature stems and approximately 3–5 times higher (0.14 mg g1). Similar results have been reported for A. belladonna
than that in young stems, mature leaves and young leaves. The (Qiang et al., 2014), D. stramonium (Miraldi et al., 2001), D. metal
biosynthesis of plant secondary metabolites is tightly controlled (Pramod et al., 2010), H. senecionis (Dehghan et al., 2013) and H.
due to the spatial and temporal expression of biosynthetic genes. muticus (Dehghan et al., 2013), for which the scopolamine (9)

Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
8 W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx

cells of A. belladonna (Suzuki et al., 1999). Our results are in con-


trast to those obtained for common herbal plants but in agreement
with the organ-independent expression of H6Hs observed in A.
acutangulus (Kai et al., 2007) and H. senecionis (Dehghan et al.,
2013). Transcripts of BaH6H were detected in the aerial parts of
B. arborea, and the positive correlation between BaH6H expression
and the scopolamine (9) content in leaves suggest that hyoscya-
mine (7) is converted to scopolamine (9) in the secondary roots
and subsequently translocated to the primary roots and aerial
parts. Scopolamine (9) biosynthesis may also be continually catal-
ysed from hyoscyamine that has accumulated in aerial parts of the
plant, especially the leaves.
The biosynthesis of tropane alkaloids in the roots and subse-
quent translocation to the aerial parts of the plant has been well
established in Datura, Hyoscyamus and Atropa plants based on
grafting experiments. The reported catalytic activities of biosyn-
thetic pathway genes detected only in the roots and in situ
hybridization, immunohistochemistry and immuno-localisation
of related genes in H. niger and A. belladonna corroborate that
Fig. 9. Contents of tropane alkaloids in different tissues of B. arborea.
specific cells in the root are the synthetic sites and that TAs
undergo acropetal transport, possibly through the xylem (De
Luca and St Pierre, 2000; Ziegler and Facchini, 2008). Recently,
contents of leaves and (or) stems were higher than those of roots. the extensive exploitation of TAs resource plants revealed a series
Thus, the aerial parts of TAs-producing plants tend to accumulate of pathway genes, including PMT, TRI and H6H that are expressed
significantly higher amounts of scopolamine (9) compared with in the aerial parts of A. acutangulus, H. senecionis, and W. coagulans,
the root. In contrast to scopolamine (9), the anisodamine (8) con- challenging previous understanding. In fact, a recent study sug-
tent was highest in the primary roots (0.62 mg g1) followed by gested that tropane alkaloids might have evolved independently
mature stems (0.22 mg g1). A small amount of anisodamine (8) in plants, at least in the Solanaceae and Erythroxylaceae
was also detected in the young stems and secondary roots (Jirschitzka et al., 2012), and a report published shortly thereafter
(0.13 mg g1 and 0.09 mg g1, respectively), but only trace provided solid evidence that unambiguously identified indepen-
amounts of anisodamine (8) (0.01 mg g1) were present in both dent de novo tropane alkaloid biosynthesis in the aerial parts of
the mature leaves and young leaves, to approximately the same W. somnifera (Kushwaha et al., 2013b). Herein, the constitutive
level as reported in the leaves of H. senecionis and H. muticus expression of BaTRI in all tissues agrees with the findings of W.
(Dehghan et al., 2013). Similarly, the concentration of hyoscyamine somnifera TRI. Yet only gene expression data does not establish
(7) was highest in the primary roots (0.60 mg g1), and this con- independent de novo synthetic competence of these tissues to syn-
centration was approximately four to ten times higher than that thesize TAs, so other in vivo experiments must be conducted as the
of the aerial parts of the plant. However, hyoscyamine (7) was next work to provide more evidences.
not detected in secondary roots. The higher contents of hyoscya-
mine (7) and anisodamine (8) in the roots than in the aerial parts
may be related to the fact that the root is a major organ for the 3. Conclusions
biosynthesis of TAs. Furthermore, expression of BaTRI was highest
in the root, which is consistent with the slightly higher total TAs In the present study, a TAs biosynthesis gene encoding the puta-
contents in the primary roots. tive tropine (6)-forming tropinone reductase was isolated from a
The profile of TAs accumulation demonstrates that B. arborea is woody resource plant, B. arborea, then heterologously expressed
a rare scopolamine (9)-predominant TAs resource plant. The and biochemically characterised for the first time. The deduced
scopolamine (9)/hyoscyamine (7) ratio was the highest ever protein, BaTRI, contained the same specific motifs and conserved
reported in the young leaves, as high as 24.7, and the secondary active amino acids as other reported TRIs from herbaceous Solana-
roots did not contain hyoscyamine (7). The latter is the direct pre- ceae plants and had the closest genetic relationship with TRIs from
cursor of BaH6H, which catalyses scopolamine (9) biosynthesis. D. stramonium and D. innoxia, which belong to the same genus of
Thus, a higher scopolamine (9)/hyoscyamine (7) ratio implies a Datura. The pH optimum of BaTRI for the forward reaction differed
higher enzymatic activity of BaH6H (Dehghan et al., 2013). To (6.8–8.0) from that of DsTRI, and its enzymatic activity for the
the best of our knowledge, the higher scopolamine (9)/hyoscya- reverse reaction at pH 9.6 was much higher. BaTRI exhibited higher
mine (7) ratio in the entire plant, especially in the aerial parts, catalytic efficiency than DsTRI at pH 6.4. Interestingly, the encod-
has never been observed and raises questions about the role of ing BaTRI and the scopolamine (9)-biosynthetic gene BaH6H were
BaH6H in the production of scopolamine (9) in various tissues. constitutively expressed in the root and aerial parts of the plant.
Interestingly, the tissue profile showed that BaH6H (accession The tropane alkaloids accumulation profile demonstrated that B.
number KR006981) was expressed in all tissues but exhibited tis- arborea is a scopolamine (9)-predominant TAs resource plant with
sue-specific variations (Fig. 8) (Qiang et al., 2015). Specifically, considerably high scopolamine (9) contents in the leaves and
the expression of BaH6H was highest in the mature leaves, which mature stem. Together with expression profiles of BaTRI and
also contained the highest levels of scopolamine (9), followed by BaH6H, this finding suggested that the biosynthesis of hyoscya-
the secondary roots, young leaves, young stems and mature stems. mine (7), and especially scopolamine (9), took place not only in
However, BaH6H was not expressed in the primary roots. H6H is a roots but also in the aerial parts of B. arborea. Because scopolamine
molecularly and histochemically well characterised TAs biosynthe- (9) exhibits higher pharmaceutical value and worldwide demand
sis pathway enzyme, the expression of which is restricted to the than hyoscyamine (7), the high scopolamine (9) content in the
root pericycle cells of H. niger (Kanegae et al., 1994) and D. metel leaves indicates that B. arborea farming may be a promising
(Pramod et al., 2010) and the pericycle, tapetum and pollen mother approach for the economic production of scopolamine (9).

Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx 9

4. Experimental 50 mM NaH2PO4, 10 mM imidazole, 10 mM Tris base, pH 8.0). The


cells were lysed in an ice-cold ultrasound bath (5  5 s) for 30 min.
4.1. Plant materials The lysate was centrifuged (12000g for 30 min), and the soluble
fraction in the supernatant was applied to a ProteinIsoTM Ni–NTA
Thirty-year-old B. arborea plants grew locally in the Garden of Resin column according to the manufacturer’s instructions (Trans-
Southwest University in Chongqing, China. Various organs, includ- Gen Biotech, Beijing, China). The enzyme activity of eluted frac-
ing the young leaves, mature leaves, young stems, mature stems, tions was screened, and catalytically active fractions were
primary roots and secondary roots were collected in October pooled. To remove imidazole, dialysis was performed using a dial-
2013. After collection, all samples were immediately placed in liq- ysis bag with a molecular weight cut-off of 14,000 Da (Biosharp,
uid N2 for further study. Hefei, China) in ice-cold dialysate (0.05 M potassium phosphate,
pH 6.4). For heterologous expression of DsTRI (accession number
L20473), a pair of primers F-DsTRI-PRO (50 -CGGATCCATGGAA-
4.2. Gene cloning
GAATCAAAAGTGTCC-30 ) with BamH I and R-DsTRI-PRO (50 -
GGAGCTCGTGATGATAACAACTTGGAAC-30 ) with Sac I, designed at
Total RNAs from the different tissues of B. arborea were isolated
the same position as BaTRI, were used, and procedures of recombi-
using a RNAplant plus kit (Tiangen, Beijing, China). A SMARTTM
RACE cDNA Amplification Kit was used to synthesize single- nation and purification are the same as above. Induced expressed
protein and affinity purified fractions were detected by SDS–PAGE
stranded cDNAs as templates for PCR amplification of the core
cDNA fragment, the 30 -RACE and 50 -RACE of the gene of interest, analysis. The protein concentration was determined using a pro-
tein quantitative kit based on Bradford method (TransGen Biotech,
according to the manufacturer’s protocol (ClonTech, California,
USA). A pair of primers of F-TRI (50 -ATGGAAGAATCAAAAGTGTCC- Beijing, China).
30 ) and R-TRI (50 -AAGCAGCAGGGAAGCAAAG-30 ) was used to clone
the core fragment on a MyCycler instrument (BIO-RAD, California, 4.5. Enzymatic assays
USA). Gene-specific primers were designed to rapidly amplify
The enzyme activity was assayed as described previously
cDNA ends (RACE) based on the core cDNA fragment sequence
(Portsteffen et al., 1994). Briefly, the substrate reduction activity
information. The following primer pairs were used for each 50 -
was measured based on NADPH + H+ consumption, which was
RACE PCR reaction: forward, the universal primers (UPM and
spectrophotometrically followed at 340 nm and 30 °C (U-3010
NUP) provided by the kit; reverse, R-TRI-5-1 (50 -GCCACCAGTAAC-
spectrophotometer, HITACHI, Japan). For a standard reaction sys-
TAGGGCT-30 ) for the first 50 -end amplification, R-TRI-5-2 (50 -
tem, each 1 ml sample contained 20 lg protein, 200 lM NADPH
TGGTGCCTTTGAGACTCCATC-30 ) for the nested amplification. The
+ H+, 5 mM substrate (0.01–30 mM for the determination of Km
following primer pairs were used for the 30 -RACE PCR: forward,
values, the concentration range of each substrate needed to be
F-TRI-3-1 (50 -GACAATTTTATTGTCAAGACTCC-30 ) for the first 30 -
adjusted according to the results of enzymatic assays, 20 mM tro-
end PCR amplification, F-TRI-3–2 (50 -CYTTTCTTTGCTTCCCTGCT-
pinone for pH optimum assay), and 0.1 M potassium phosphate at
30 ) for the nested amplification; reverse, the universal primers
pH 6.4. All substrates were commercially available: tropinone 5,
(UPM and NUP) provided by the kit. The first and nested PCR pro-
tropine 6 and 4-methylcyclohexanone were obtained from Sigma
cedures were carried out according to the conditions described in
(Sigma–Aldrich, St. Louis, MO,); 3-quinuclidinone hydrochloride
the protocol. The following pair of primers was used to confirm
was purchased from Aladdin (Aladdin, Shanghai, China). For the
the physical cDNA of BaTRI: F-BaTRI-full (50 -CCCATCCCAAAA-
reverse reaction, tropinone 5 and NADPH were replaced by tropine
TAGTTG-30 ) as the forward primer, R-BaTRI-PRO (50 -CGAGCTCGT-
6 (0.01–5 mM for the determination of Km value) and NADP+
GATGATAATAACAGAGAAC-30 ) as the reverse primer. Each PCR
(300 lM), respectively in 0.1 M glycine buffer at pH 9.6. As a neg-
product was subcloned into the pMD-18T vector and sequenced.
ative control, boiled proteins were added instead of purified
recombinant BaTRI. Data were collected during the initial linear
4.3. Sequence analysis phase of the enzyme reaction to calculate the kinetic parameters,
which could be achieved by adjusting the amount of enzyme and
Comparative and bioinformatics analyses of BaTRI were carried 20 lg used here was suitable. The kinetic constants were calcu-
out online at the websites http://www.ncbi.nlm.nih.gov and http:// lated with a non-linear regression of the Michaelis–Menten equa-
www.expasy.org. The nucleotide sequence, deduced amino acid tion using OriginPro 8.0. All assays were repeated three times, and
sequence and ORF (open reading frame) encoded by BaTRI were mean values with standard deviations are reported.
analysed, and the sequences were compared based on a database
search using the BLAST program. The phylogenetic tree was con- 4.6. Real-time quantitative PCR analysis
structed by MEGA (http://www.megasoftware.net). The structural
modelling was performed using Swiss-Modeling (http://www. To detect the expression levels of BaTRI in different organs,
swissmodel.expasy.org/) and Pymol (http://www.pymol.org). including the secondary roots, primary roots, mature stems, young
stems, mature leaves and young leaves, real-time quantitative PCR
4.4. Recombination and purification of BaTRI and DsTRI (qPCR) was carried out with a pair of primers for BaTRI (forward
primer: 50 -CGTGAGAAGCTTATGCAAACTG-30 ) and reverse primer:
A pair of primers, F-BaTRI-PRO (50 -CGGATCCATGGAAGAAT- 50 -CTTCAATAATGGGTAAGCAATCTGA-30 ). The total RNAs for each
CAAAAGTGTCC-30 ) with BamH I and R-BaTRI-PRO (50 -CGAGCTCGT- sample were extracted using a RNAplant plus kit (Tiangen, Beijing,
GATGATAATAACAGAGAAC-30 ) with Sac I, were used to isolate the China). The quality and concentration of the RNAs were assessed
coding sequence of BaTRI by proofreading DNA polymerase. The via agarose gel and spectrophotometer (U-3010 spectrophotome-
BaTRI coding sequence was subcloned into the E. coli expression ter, HITACHI, Japan) analyses. First-strand cDNA was synthesized
vector pET28a with BamH I and Sac I, and then introduced into E. from RNA (1 lg) using an iScriptTM cDNA Synthesis Kit (Bio-Rad,
coli strain Rosetta (DE3). The overexpression of BaTRI was induced USA). qPCR was performed using iTaqTM Universal SYBRÒ Green
by the addition of IPTG (0.5 mM) at 28 °C for 6 h. To purify the Supermix (Bio-Rad, USA) in a final volume (20 ll) under the fol-
BaTRI recombinant enzyme, cells were collected by centrifugation lowing conditions: initial denaturation at 94 °C for 2 min, 40 cycles
(10 min at 5000g) and resuspended in lysis buffer (300 mM NaCl, of denaturation at 94 °C for 15 s and annealing at 57.5 °C for 15 s,

Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
10 W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx

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Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008

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