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Article history: Brugmansia arborea is a woody plant species that produces tropane alkaloids (TAs). The gene encoding
Received 4 October 2015 tropine-forming reductase or tropinone reductase I (BaTRI) in this plant species was functionally charac-
Received in revised form 1 March 2016 terised. The full-length cDNA of BaTRI encoded a 272-amino-acid polypeptide that was highly similar to
Accepted 8 March 2016
tropinone reductase I from TAs-producing herbal plant species. The purified 29 kDa recombinant BaTRI
Available online xxxx
exhibited maximum reduction activity at pH 6.8–8.0 when tropinone was used as substrate; it also exhib-
ited maximum oxidation activity at pH 9.6 when tropine was used as substrate. The Km, Vmax and Kcat
Keywords:
values of BaTRI for tropinone were 2.65 mM, 88.3 nkat mg1 and 2.93 S1, respectively, at pH 6.4; the Km,
Brugmansia arborea
Solanaceae
Vmax and Kcat values of TRI from Datura stramonium (DsTRI) for tropinone were respectively 4.18 mM,
Tropane alkaloids 81.20 nkat mg1 and 2.40 S1 at pH 6.4. At pH 6.4, 6.8 and 7.0, BaTRI had a significantly higher activity
Tropinone reductase I than DsTRI. Analogues of tropinone, 4-methylcyclohexanone and 3-quinuclidinone hydrochloride, were
Enzymatic kinetics also used to investigate the enzymatic kinetics of BaTRI. The Km, Vmax and Kcat values of BaTRI for tro-
Tissue profile pine were 0.56 mM, 171.62 nkat.mg1 and 5.69 S1, respectively, at pH 9.6; the Km, Vmax and Kcat values
of DsTRI for tropine were 0.34 mM, 111.90 nkat mg1 and 3.30 S1, respectively, at pH 9.6. The tissue pro-
files of BaTRI differed from those in TAs-producing herbal plant species. BaTRI was expressed in all exam-
ined organs but was most abundant in secondary roots. Finally, tropane alkaloids, including hyoscyamine,
anisodamine and scopolamine, were detected in various organs of B. arborea by HPLC. Interestingly,
scopolamine constituted most of the tropane alkaloids content in B. arborea, which suggests that B.
arborea is a scopolamine-rich plant species. The scopolamine content was much higher in the leaves
and stems than in other organs. The gene expression and TAs accumulation suggest that the biosynthesis
of hyoscyamine, especially scopolamine, occurred not only in the roots but also in the aerial parts of B.
arborea.
Ó 2016 Elsevier Ltd. All rights reserved.
http://dx.doi.org/10.1016/j.phytochem.2016.03.008
0031-9422/Ó 2016 Elsevier Ltd. All rights reserved.
Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
2 W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx
Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx 3
Multiple alignments of BaTRI amino acid sequence with other (Nakajima et al., 1999a). Eleven amino acids (Val110, His112,
characterised TRIs are shown in Fig. 2. Like other members of the Ile159, Ala160, Leu165, Val168, Val203, Leu208, Val209, Ile223
SDR superfamily, BaTRI shared a conserved TGXXXGXG motif and Phe226) were predicted to be in contact with the tropinone
involved in NADPH binding (Oppermann et al., 2003), the NNAG (5) substrate (Nakajima et al., 1998), and site-directed mutagenesis
motif of SDRs (Oppermann et al., 2003) and the catalytic tetrad of various residues of TRs established that five residues (His112,
motif (N-S-Y-K) of TRs (Filling et al., 2002), among which the tyro- Ala160, Val168, Ile223 and Phe226) contributed to the sterospeci-
sine residue is considered essential for the catalytic activity of TRs ficity of the respective TRIs (Nakajima et al., 1999a). All residues
Fig. 2. Comparison of tropinone reductase-I from B. arborea (BaTRI) with other known tropinone reductases via a multiple sequence alignment. Identical amino acids are
shown in white on a black background, and the conserved amino acids are shown in black on a grey background. Blue-decorated residues in blue boxes are involved in NADPH
binding. Red highlights denote residues conserved in SDRs. Eleven yellow highlighted residues participate in tropinone (5) binding. A red box designates the signature YXXXK
motif of short chain dehydrogenases/reductases (SDR), and sequences highlighted in green denote a catalytic tetrad. (For interpretation of the references to colour in this
figure legend, the reader is referred to the web version of this article.)
Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
4 W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx
were conserved at analogous positions in BaTRI. Thus, a bioinfor- whereas seven residues of BaTRI and DsTRI, i.e., His112, Ile159,
matics analysis suggested that the cloned BaTRI was a functional Ala160, Leu165, Val168, Ile223 and Phe226, were substituted by
TRI enzyme that catalyses the reduction of tropinone (5) to tropine Tyr100, Val147, Ser148, Val153, Glu156, Leu210 and Leu213,
(6). respectively, in DsTRII. These structural features implied again that
The phylogenetic analysis revealed that BaTRI and other TRIs BaTRI may represent a functional form of TRI.
from Solanaceous plants were grouped in the same TRI cluster
(group I). BaTRI exhibited close phylogenetic proximity to D. stra- 2.2. Purification of the recombinant BaTRI
monium TRI and D. innoxia TRI, which coincided with the fact that
these species have a closer relationship (Fig. 3). Naturally, all TRIIs The coding region of BaTRI was subcloned into the protein
from Solanaceous plants were assembled into the TRII cluster expression vector pET28a and then overexpressed in E. coli Rosetta.
(group II). Putative TRs or SDR-like proteins from plants outside After induction for 6 h by IPTG, the soluble fraction of lysed bacte-
of Solanaceae, such as AtTRI, VvTRI and CoTRI, constituted a third ria was collected. The enzyme assay demonstrated that the super-
cluster (group III). CoTRI and DnTRI were the only members of natant exhibited tropinone reductase I activity, suggesting that
group III that had been functionally validated to exhibit tropinone recombinant BaTRI was functionally expressed. Thus, a Ni+–NTA
(5) reduction activity, but their characteristics significantly dif- affinity chromatography column was adopted to purify His-tagged
fered from those of Solanaceous TRIs (Brock et al., 2008; Chen recombinant BaTRI. On the SDS–PAGE gel, the molecular weight of
et al., 2013). the purified recombinant BaTRI was approximately 29 kDa, which
A 3-dimensional (3D) molecular model of BaTRI was con- was consistent with the calculated molecular weight of BaTRI. The
structed by using the DsTRI crystal structure (1ae1. pdb) as a tem- molecular weight of the recombinant BaTRI was similar to those of
plate to comparatively analyse the substrate-binding pocket of DsTRI (Nakajima et al., 1999a) and HnTRI (Nakajima and
BaTRI with that of DsTRI, which shared 95% sequence identity with Hashimoto, 1999) (Fig. 4).
BaTRI. The predicted structure had a deep cleft between the core
structure and a small lobe, which constituted a binding pocket 2.3. Enzymatic activities of BaTRI at different pH conditions
involved in contacting tropinone (5) (Nakajima et al., 1998).
Among the pocket, five amino acids critical for the stereospecificity The optimal pH value for the activity of BaTRI was screened
of the reaction mentioned above were conserved at the corre- (Fig. 5). For the reduction activity or forward reaction, BaTRI exhib-
sponding positions of BaTRI (Fig. S1. 1A and B). An alignment anal- ited optimal catalytic velocities over a relatively broad pH range of
ysis of the active site environments of BaTRI, DsTRI (1ae1.pdb) and 6.8–8.0, and its activity was highest at pH 8.0. By contrast, Solana-
DsTRII (1ipf.pdb) showed strong homology between BaTRI and ceae TRIs were previously reported to exhibit significant catalytic
DsTRI and significant variation between BaTRI and DsTRII activity over a relatively narrow pH range, although the optimum
(Fig. S1. 1C). BaTRI could be perfectly superimposed onto DsTRI, pH values for HnTRI (Hashimoto et al., 1992), StTRI (Kaiser et al.,
Fig. 3. Phylogenetic relationship of BaTRI with other plant TRs. The tree was constructed with maximum likelihood method in MEGA4.1 using sequences from Datura innoxia
TRI (KJ676865), Datura stramonium TRI (AAA33281.1), Hyoscyamus niger TRI (BAA85844.1), Anisodus acutangulus TRI (ACB71202.1), Withania coagulans TRI (AGB56644.1),
Solanum tuberosum TRI (CAC34420.1), Datura stramonium TRII (AAA33282.1), Hyoscyamus niger TRII (AAB09776.1), Solanum tuberosum TRII (CAB52307.1), Anisodus
acutangulus TRII (ACB71203.1), Dendrobium nobile TRI (AFD23287.1), Hordeum vulgare (BAJ87177.1), Oryza sativa (ABF95192.1), Zea mays (ACG34080.1), Dendrobium nobile
TRII (AFD23289.1), Glycine max (XP_003552795.1), Populus trichocarpa (EEE95485.1), Vitis vinifera (XP_002282554.1), Arabidopsis lyrata (ABW81053.1), Arabidopsis
cebennensis (ABW81184.1), Boechera divaricarpa (ABW74581.1), Arabidopsis thaliana (AAM10204.1), and Cochlearia officinalis (CAO02390.1) along with the BaTRI sequence.
Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx 5
Fig. 4. SDS–PAGE analysis of affinity-purified His-tagged recombinant BaTRI. IPTG-induced cells were sonicated and then subjected to centrifugation. The supernatant
(soluble fraction) was collected and loaded on a Ni++–NTA affinity column to purify the His-tagged recombinant BaTRI. The fraction flowing through the affinity column and
the elutes of imidazole gradient elution (concentration gradient of 50 mM, 100 mM, 150 mM, and 200 mM) were resolved on a 12% SDS–PAGE gel. The gel was stained with
Coomassie brilliant blue R-250. M, protein molecular weight marker. Arrows indicate the band corresponding to recombinant BaTRI protein.
Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
6 W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx
and tropine (6) at the optimum pH of 9.6. The Michaelis–Menten deprotonated fractions can be bound by BaTRI, as is discussed
curves of the enzyme for the four substrates were drawn to deter- above with respect to the optimum pH.
mine the Km values and Vmax values of the enzyme for the sub- A comparison of the enzymatic kinetics of BaTRI with DsTRI, a
strates (Fig. 6), and turnover rate (Kcat values) and catalytic counterpart isolated from D. stramonium which has a close rela-
efficiency (Kcat/Km values) were deduced from the Km values tionship with B. arborea, established that the affinity of BaTRI for
and Vmax values. All enzymatic kinetics parameters are listed in tropinone (5) was twice as low (Km = 2.65 mM) as that of DsTRI,
Table 1. The reduction velocity (Vmax) and affinity (Km) of BaTRI but the turnover was twice as high as that of native DsTRI
to tropinone were 88.3 ± 1.81 nkat mg1 and 2.65 ± 0.19 mM, (Vmax = 88.3 nkat mg1) (Km = 1.3 mM, Vmax = 43 nkat mg1)
respectively, notably faster and stronger than those of 3-quinu- (Portsteffen et al., 1994), indicating the same catalytic efficiency
clidinone hydrochloride but significantly slower and weaker than at pH 6.4. In fact, the pH optimum of 6.4 for DsTRI activities was
those of 4-methylcyclohexanone. The Kcat values and Kcat/Km val- below the optimal pH range of 6.8 to 8.0 for BaTRI activity. Further-
ues corroborated these findings. Noticeably, compared with the more, for Solanaceae TRIs, the Km values for substrates containing
reduction of tropinone (5), BaTRI exhibited a faster oxidation proton-accepting nitrogen considerably decreased at less acidic
velocity (171.62 ± 5.42 nkat mg1) and stronger affinity conditions (Kaiser et al., 2006; Portsteffen et al., 1994), which
(0.56 ± 0.04 mM) to tropine (6), with 10-fold higher Kcat/Km val- was also discussed above. To experimentally compare the catalytic
ues (10160.71 s1 M1) than that (1105.66 s1 M1) of tropinone efficiency between BaTRI and DsTRI at pH 6.4 and validate that
at pH 9.6. This result confirms that BaTRI is a functional enzyme BaTRI might have a higher activities at pH above 6.4 than DsTRI,
that catalyses a reversible reaction in vitro, but the real enzyme the recombinant TRI from D. stramonium was purified (Fig. S3)
activity should be considered to depend on physiological pH condi- and the enzyme kinetics of DsTRI for tropinone (5) reduction and
tions, as mentioned above. tropine (6) oxidation were determined under the same experimen-
3-Quinuclidinone hydrochloride and 4-methylcyclohexanone tal condition as BaTRI. Michaelis–Menten curves of the enzyme for
are typical structural analogues of tropinone (5) representing the two substrates (tropinone (5)/tropine (6)) were shown in
monocyclic and bi-cyclic substrates (Fig. S2), respectively, and Fig. S4 and enzymatic kinetics parameters were listed in Table 2.
these compounds are widely used to test the substrate specificity For tropinone (5) reduction at pH 6.4, both its affinity
of TRs (Brock et al., 2008; Chen et al., 2013). TRs from C. officinalis (Km = 4.18 mM) and reduction velocity (Vmax = 81.20 nkat mg1)
(Brock et al., 2008) and Dendrobium nobile (Chen et al., 2013) exhi- of DsTRI were lower and slower than those of BaTRI, so the cat-
bit higher reduction velocities for monocyclic ketones than for bi- alytic efficiency of DsTRI (574 s1 M1) was half of that of BaTRI.
cyclic substrates. Solanaceae TRs, particularly pseudotropine-form- For tropine (6) oxidation at pH 9.6, the affinity of DsTRI for tropine
ing reductases (Drager, 2006), and BaTRI also exhibit this property. (6) was higher (Km = 0.34 mM) but the oxidation velocity
At the assay pH of 6.4, the non-ionizable substrate 4-methylcyclo- (Vmax = 111.9 nkat mg1) was slower than those of BaTRI, showing
hexanone is uncharged, whereas the nitrogen-containing sub- similar catalytic efficiency (9705.88 s1 M1) to that of BaTRI.
strates tropinone (5) and 3-quinuclidinone hydrochloride are Enzyme activities of tropinone (5) reduction with tropinone (5)
positively charged. Thus, as expected, BaTRI exhibited significantly concentration of 5 mM at pH 6.4, 6.8 and 7.0 indicated that BaTRI
higher apparent affinity for 4-methylcyclohexanone than tropi- had significantly higher activity than DsTRI (Fig. 7). DsTRI has been
none (5) and 3-quinuclidinone hydrochloride, of which only the reported to be an effective gene to enhance TAs synthesis, since its
Fig. 6. Michaelis–Menten curves for the NADPH-dependent reduction reaction of tropinone (5) (A), 3-quinuclidinone hydrochloride (B), 4-methylcyolohexanone (C) and
NADP+-dependent oxidation reaction of tropine (6) (D) catalysed by BaTRI. The buffer for the reduction reaction was potassium phosphate (0.1 M, pH 6.4), and the buffer for
the oxidation was glycine–NaOH (0.1 M, pH 9.6). Each point is the mean of triplicate assays.
Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx 7
Table 1
Kinetic parameters of BaTRI-catalysed reaction. The data represent means of three independent measurements ± SD. The Km and Vmax were calculated from the Michaelis–
Menten equation with a non-linear regression. The Kcat value was calculated by dividing Vmax by Et (the number of enzymes in each assay).
Substrate pH assay Km (mM) Vmax (nkat mg1 protein) Kcat (s1) Kcat/Km (s1 M1)
Tropinone (5) 6.4 2.65 ± 0.19 88.30 ± 1.81 2.93 ± 0.06 1105.66
4-methylcyclohexanone 6.4 0.46 ± 0.04 140.91 ± 7.23 4.67 ± 0.24 10152.17
3-quinuclidinone hydrochloride 6.4 5.17 ± 0.29 16.26 ± 0.54 0.54 ± 0.02 104.45
Tropine (6) 9.6 0.56 ± 0.04 171.62 ± 5.42 5.69 ± 0.18 10160.71
Table 2
Kinetic parameters of DsTRI-catalysed reaction. The data represent means of three
independent measurements ± SD. The Km and Vmax were calculated from the
Michaelis–Menten equation with a non-linear regression. The Kcat value was
calculated by dividing Vmax by Et (the number of enzymes in each assay).
Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
8 W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx
Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx 9
Please cite this article in press as: Qiang, W., et al. Functional characterisation of a tropine-forming reductase gene from Brugmansia arborea, a woody plant
species producing tropane alkaloids. Phytochemistry (2016), http://dx.doi.org/10.1016/j.phytochem.2016.03.008
10 W. Qiang et al. / Phytochemistry xxx (2016) xxx–xxx
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