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Molecular Basis of Inheritance
Molecular Basis of Inheritance
Basis of
Inheritance
Introduction:
DNA-genetic organisms.
material
for most
controls
the inheritance trails
-
of
from to next.
the
one
generation
NUCLEIC ACID
RNA
I
DNA
Ribonucleic
Deoxyribonucleic acid.
acid
↓
↓
material
Genetic
material
Genetic in riboviruses.
all
in
organisms d
except some
functions as
viruses.
A
messenger carrying
information
genetic
A
adapter for picking
up amino
acids,
structural
and
catalytic
molecules in some
cases.
DNA-Deoxyribonuclei
acid:
-> substance
Acidic
->
nucleus.
present
in
Friedrich Meischer
firstidentified by
->
1869.
in
L I
↳
called it NUCLEIN
-
ces to be acidic in nature
Length
of
DNA -number
of nucleotides
nucleotides-Base pain.
pair
of
(bp)
CHARACTERISTIC
->
OF AN
ORGANISM.
Examples:
circular
1.
In bacteriophage-SSDNA,
5386 bases.
Lambda(x) Linear
2.
phage-dSDNA,
48502bp.
3. Escherichia coli
dSDNA, circular
4.6x100bp
4. Human linear
genome ASDNA,
haploid 109bp
↳
3.3 x
2x3.3x109 6.6x109bp
Diploid
-> =
DNA-basic unit -
nucleotide
↓
↓
Two Deargeibose
types: (C5 1004)
1. Purines:
-
DNA-
Ribose
9- membered
Structure
EXAMPLES -
Adenine, Guanine
(A) (q)
2.
Pyrimidines:
Heterocyclic, 6-membered, single ring
structure N-1,3 position
with
Example i
polynucleotide
has
chain
linking
components
among
PHOSPHOESTER
N-GLYCO SIDIC
LINKAGE: LINKAGE:
of
Between OH when
of
I'c 5'
of pentose of nucleoside
I
and
sugan
nite
presphate
genous group.
base. (C- 1 of sugar)
I -(position
↓
NUCLEOTIDE
purines -> 1-9
A(G) is
I
geosidic
einbiage l'of of sugar
->
I'-position
Pyrimidine- of T/C.
linkage
-
Glycosidic linkage
↑-
forms
a NUCLEOSIDE.
Nucleotide +
Nucleotide
to
5
-
linked 3
through
HOSPHODIESTER
↑
LINKAGE
form
to DINUCLEOTIDE
Every polymer-I. face phosphate
at 5' end
-
This
is the send
of polynucleotide
chair.
3'C
2.
Free OH
of group
↓
-' end chain.
of
polynucleotide
BACKBONE chain
of polynucleotide
↓
Sugar Phosphates
-
Niteo linked to
base
sugar
->
genous
projects
from
it.
DERIVATION OF DNA STRUCTURE:
Two lines
of investigations helped in
denivation
the
of DNA structure:
a)
X-ray Crystallography:
Maurice
Wilkins and Rosalind
Frambein-obtained
very fine
pictures
DNA.
X-Ray diffraction of
suggested structure
of DNA was
sort helix 3.
with 4n
of
a
periodicity.
But model
peroposed.
was
no
definitive
b) Erwin Rules:
Chargaff's
Chargaff" along with
colleagues
base
performed competition
studies
certain
and
put forward generalisati-
DNA
for
-
ons double stranded
Chargoff's rule
=> Not
applicable for single-stranded
DNA.
1. Purines occur
and pyrimidines
in
equal amount.
2. Purines -> A +
Pyrimidines -> C+ T
A G c T.
+
:
+
=
= [This
3.
1 value constant for
a
all
species. I
a
species.
used to
species.
->
identify
one-probaryotes
·Less than
Ex: E.coli =
0.92
one--Eukaryotes
·
More than
Ex:Humans-1.52
5. and
Sugar
deorgribose phosphates
residues occur
equal
in number.
with
6. Purine adenine isequimolar
=T
thymine.
A
with
Punine
guanine equimolar
7. is
GE C
pyrimidine cytosine.
Watson and Crick
Francis
James
pairing
was base blue the stands
two
chains.
of polynucleotide
-man
by
observations
the Fair
chargaff.
since
they
->
complementary
are to
find other
can out the stand.
A
= T
G C
=
G T AATCCTG
!++ad
Each strand also act
as a
template
strand DNA.
for new
the
of
Questions:
1.
CTAGGCAGC
-
GATCCGT CG
2. AGUCCAGUA- UGAGGUCAU
Features:
DNA consists
of
. two
chains
polynucleotide
Backbone
sugar
-
-
phosphate + bases
inside.
anti
parallel fashion
5'- 3'
with
polarity
one
in and 3'-5'
polarity in other.
3. Bases
through
paired
Hydrogen
bonds.
A
T;G C.
=
purine
always opposite
*
to a
pyrimidine
4. Double chain-
twisted a
in
right-handed
helically
fashion.
5. Each
of double belive
or
pitch
tur n
is
culine 3.4mm.
Roughly 10
bp
of
the
between
Distance
in each
pitch.
two
adjacent base
pains -0.34 nm.
6. The stacks
plane of one bass
pair
over the other in a double helice.
This H-bonds-confin
along with
to helical structure.
stability
the
CENTRAL
DOGMA of Molecular
Biology:
->
flow of information
master
from
Copy
DNA
to
copy
working
RNA
and
RNA
to molecule
from building
or
trait molecule
expressing polypeptide.
Proposed by Francis Crick.
Replication
⑮ A
transcription mRNA
translation
>Protein
REVERSE CENTRAL
DOGMA/ TEMINISM
- >
Exception
viruses.
->
Only some
in
H. Temin and D. Baltimore
->
Given by (1970)
The viruses
produce
->
enzyme
an
called
TRANSCRIPTASE.
This
synthesizes DNA over RNA
template.
IMPORTANT in
understanding
- >
cancer cells.
~
-
This Nobel Price.
given a
8
TRANSCRIPTION
TRANSLATION
I
D ·A RNA > Protein
W
REVERSE
TRANSCRIPTION
-NGHELIX:
-> Distance blw two consecutive
base min-0.34x10m.
pains=0.34
-> No.
up
humans
in
-
6.6x109bp.
human DNA=6.6x109x
length
->
of
0.34 x 10-i
=2.2m.
More than
lengths
of atypical
nucleus (10 m).
4.6x10 10-9
-Length
of
DNA 0.34
=>
x
x
I 1.36 mm.
This lot
larger
isa than 1
m
is
which the cell
size
Thus DNA
only
can be accommodated
packaging
in small
a area
through
compaction.
or
DNA
packaging Probaryotes:
in
the cell
DNA is not scattered
throughout
->
don't well-defind
though they
even have a
nucleus.
SUPER CONED
DNA
->
-
found cytoplasm-INSTAGE-
in
->
coils maintained non-histone
by
basic POLYAMINES
protein which
have
change.
positive
Nucleoid
Packaged of DNA-
structure
or
Genophore.
Packaging
DNA in
Eukaryotes:
Organisation comple
-> - much more
out
carried
and
by a set
of
positively changed basic called
proteins
HISTONES.
rich basic
in
amino acid
residues-lysines and
arginines
with
charged
side chains.
->
Five
types of histone
proteins:
H;MeA;MzB;Me and
My
↓
4 Ma, My and
them
of -> MA, ty
↓
pairs form
to
occur in
HISTONE OCTAMER on
mu-body.
charged
Negatively
DNA-
wrapped
histone
around the
charged
positively
octamer to structure
form
a
-> NUCLEOSOME-
H2A
↑Ha
↑
Hy
H3
Around
200bp of DNA-
wrapped
over me
body
to
complete
about
11 twes.
100 60h.
x
of
size nucleosome ->
DNA
present
between
two adjacent
nucleosomes - LINKER DNA
(with about
80bp.)
CHROMATIN
appearance.
further
coils - SOLENOID/
CHROMATIN
FIB RE
(Diameter-30nm).
condensed coiled
further
metaphase
at stage
all division to
of
form chromosomes.
chromation at
>Passaging of
level additional
higher an
requires
called
set
of proteins
NON HISTONAL CHROMOSOMAL
(NAC) PROTEINS.
1.
scaffold Functional Regulatory
or
2. 3.
gente
expression.
Chromatin on
staining
the basis
of
stained stained
darkly lightly
* *
region. region.
Loosely packed
*
is
Chromation
*
chromatin
densely packed
Transcriptionally:
* Transcriptionally
*
-
active.
inactive.
e
Chemical
composition
of chromosome:
DNA =40%
RNA 1.2%
=
50%
proteins
Histone =
Acidic 8.5%
proteins
=
Lipid Traces
-
+ 2
Fett
+2
Ca
ig
-
Traces.
THE
SEARCH FOR
GENETIC MATERIAL:
that
Experiments
proving DNA-genetic
material:
1. TRANSFORMING PRINCIPLE:
m e re
Experiment conducted
by
FREDERICK
in
He selected strains
of bacterium
two
Streptococcus pneumonial
/Pneumococcus)
S-111 R-11
S -
->
smooth/ ->
paugen/
type
capsulated non-capsular
type
Ted
have
-
a mucous
to
no mucous
/polysaccharide) and
coat
colonies
shiny
in culture
plates
b
non-virulent
↓ and do
not
virulent
and
cause
cause
pneumonia. pneumonia.
conclusion:
basterior.
2. occured
This
perhaps due to
absorption
of
some
transforming principle on
bacteria
substance
by rough type from
heat-killed bacteria.
smooth
3. This
enabled the to
R-strain
synthesize
and
a smooth
polysaccharide
coat
become virulent.
This
->
due to the
be
must
transfer of
material.
genetic
Deawback: Biochemical of genetic
nature
material-not
defined from
his
experiments.
MATION PRINCIPLE:
Oswald
wwo-? 1.
Avery
2. Colin Macleod
(1944)
3.
Maslyn Mocanty
b
in-vitro to
experiment
repeated
biochemical nature
of
identify
the
transforming
substance.
↓
They proved substance
this
that - DNA.
Prior
to this, material
genetic thought
-
be
to
protein.
what
did
do?
they
1.
They purified
biochemical i.e.
could
transform live R-cells into
S-cells.
They
discovered alone
2. DNA
from
S-bacteria caused R-bacteria
to
become
transformed.
They discovered that
protein
-
5. also
digesting enzymes
i.e.
protease and
not
not
substance
Transforming
... was
or RNA.
a
protein
4.
Digestion DNase
with did inhibit
transformation
↳
that the
suggesting
DNA caused
transformation.
many biologists
Drawback -
not were
convinced.
EVIDENCE EXPERIMENTS
2.
from with
BACTERIO PHAGE:
How ?
1.
They worked a virus
with
↓
i
bacteriophage.
infects
bacterium Escherichia coli
and inside
multiplies it.
Tz made
phage up of-DNA+
-
protein
coat-
Whether
DNA contains
or
protein
the
for
information production
virus
of new
particles.
Functions
of DNA and could
proteins be
them with
by labelling
out
found
tracers.
radioactive
DNA
contains
phosphorus
but not
sulphur.
...
phage DNA-labelled p
with
How?
to
by growing bacteria
infected
with in medium
culture Poy
phages
Another contains
protein
of phage
-
sulphur but no
phosphorus.
by
5
growing
bacteria
infected
with
another medium
culture
phages
in
containing "Soy
labelling,
3
After steps were
followed:
Both
Infections:
1.
labelled
nee
types of phages
were allowed to
infect
normally cultured bacteria
in experiments
separate
BLENDING:Bacterial
cells
2.
- e
were
agitated
ina blender to break the
bactired.
particles
were
The
3.
GATN: virus
by spinning
bacteria
from
the
separated
them a
in
centrifuge.
centrifugation-bacterial
cells
After
showed the
presence of radioactive
while,
i.e. in medium.
next
of phage.
generation
viruses
Bacteria-infected
with
proteins
were not radioactive
that
indicated
This proteins
didnot enter the bacteria
the
from viruses.
DNA- material
genetic
.
to bacteria.
passed from virus
criteria:
be stable.
structurally
and
Chemically
.
c. should be able to
generate
its
replica
<replication).
slow
3. Should
provide
the
scope for
mutation evolution.
required for
4. Should be able to
express itself the
in
DNA in
comparison more
Stable.
of thymine(5-Methyeuracil)
2. presence
at
place of Uracil
the
confers
stability to
additional DNA.
3. RNA-unstable, mutates
faster.
consequently
viruses
having
RNA
directly code
can
genome
for of
synthesis protein.
can
easily
express characters.
-world:
RNA-firstgenetic material.
·
as
RNA-acts
genetic
·
as material well as
catalyst.
a
importantbiochemical reactions
·
Some
that RNA
catalysed
by catalyst
-
are
Peptidyl transferase
band
-
Peptide
formation.
unstable.
DNAevolved
from RNA chemical
with
.
it
making
stable
modifications
more
DNA
being
double stranded
and
having
strands
complementary further resists
changes by process of repair.
a
evolving
molecule
structural
RNA-adaptin
and in some eases - CATALYTIC.
RNA DNA
function
and as
genetic
. can
material, DNA-more
but stable
material.
preferred for storage of genetic
For transmission
of genetic material
to
RNA is better.
EPLICATION:
R
nee
proposed
a
Watson and Crick
DNA
scheme
for
the
replication. While
peroposing
double helical
of
structure DNA.
separate
↓
act as
for
template synthesis
strands.
of
new
-
After completion
of replication
↓
Each DNA I strand
parent
I
newly synthesi-
strand.
yed
-
This
scheme semiconservatives DNA
replication
Experimental peroof:
-
(1958)
performed following
experiment heavy nitrogen
using
(IN) E.coli.
in
rocess.
-
E.coliin
a contain
medium
greue
15
Nyc the
-ing only mitogen
as source
"N-heavy of nitrogen
isotope
was
incorporated newly
into
DNA well as
synthesized as
others
Nitrogen containing
compounds.
distinguished
DNA
molecule
heavy
-
normal
from the
by centrifugation
DNA
solution
of lower
density
at
top
the
increases
that
gradually
towards
the bottom
with
density.
highest
~I
Cells medium
were
transferred into a
normal
with "NHyc
↓
various
samples were taken at
intervals
time
definite as the
double-stranded helix.
↓
The various samples were
separated
independently
on
ascIgradients
to
the
measure densities of DNA.
↓
:the extracted
DNA the
from
culture (
after generation
i.e. minutes has
after
20
hybrid
or intermediate
density.
↓
from
DNA extracted the
culture
after
another
generations
2nd
i.e.
generation or 40
after
minutes equal amounts
of
(NN's) and of
hybrid
DNA
(N'YN'Y.
-
light DNA
DNA
hyberid amount
can be
mode
of replication.
proved
2. et.al.
Taylor semiconser
-
-
vative
mode of chromosome
replication
eukaryotes using
in
thymidine
teitiated
beaus)
faba (Faba
semiconservative
3. Cairns -
peroved
-
E.coli
of replication
mode in
titiated
by using thymidine
C +dR)
autoradiography
in
experiment.
He also o-model
proposed
circular
DNA.
for replication in
Machinery Enzymes/DNA
The and the
Replication
Mechanism:
->
process
of replication requires a
set
of enzymes.
Main
enzyme DNA-dependent DNA
polymerase.
-
with
highly efficient 2000bp
ability to polymerise some
per
second.
->
Not
only polymerases
these have
to
be but
fast
to
also
they
have
catalyse higher
with
degree of
accuracy
as mistakes
any ↓
MUTATIONS.
whole
genome of
Ecoli 4.6x10p
having
within 38 minutes
replicated
Steps of
DNA
replication:
1.
ORIGIN REPLICATION:
OF
Replication
begins
at
particular
-
called ORIGIN OF
region
&
EPLICATION.
to OR1-
provide
->
we need
vectors.
prokaryotes
-> ONE ORI
Eukaryotes many
Ecoli-ori-c
·
In
-
2. Activation
of deoxyribonucleotides:
Four
types dearcyribonucleotides.
-
3
d AMD dATD
d GMP 2 > dG TD
t
HPOy
d TMP dT TO
d CMP d CTP
deoxyribonucleotides
activated
by
... are
phosphorylase triphosphate
into
state.
Dearcyribonucleosidecaniphosphate
I serve as a 2. Provide
as ATP.
mming
of helice:
Unwinding
of double helical
parental
·
molecule about
brought by
HELICASE
enzyme is
which ATP
dependent
of
Unwinding
molecule into
·
DNA
two strands
7
results in a
of
formation
Y-shaped structure.
↓
called
Replication
fork
E
single
stands stable
with the
help of strand
single proteins
binding
SS Bi
-
51 31
3 51
T
CONTINUOUS DISCONTINUOUS
-
SYNTHESIS 5YNTHESIS
-
Newly
3 51
synthesized
- 4
5
31
strands
REPLICATING FORK.
unwinding coiling
Due to
super
a
end
developed
gets on the
of DNA
to
opposite replicating fork
Unwinding
done ENZYTE
by
TOPO ISOMERASE.
In
prokaryotes has
DNA
gyrase
topoisomerase activity.
4
meN
PRIMER STRAND: OF
parental
strand.
opposite
III
-> DNA
polymerase
true
explicate
in E.coliincapable of initiating
DNA unable to
synthesis it is
... An PRIMASE
enzyme
↓
synthesizes a short
primer
strand RNA.
of
This strand
Acts
primer
as a
stipping
to
stone start
errorless
replication.
Once DNA
synthesis completed
RNA strand
is then
:primer
removed
enzymatically.
5
meNADS:
NEW
OF
polymerase
DNA
dependent
DNA
in
catalyse polymenation only
5'- 3'
one direction:
...
Replication continuous
is
on
template strand
with
polarity
-
3 5'
↓
This
is DAUGHTER
LEADING
STRAND.
Replication discontinuous
is
on
FRAGMENTS.
-
These
E
fragments later
by
joined ligase.
DNA
* In
eukaryotes
--
Replication of DNA
takes
place at
s-phase.
divisions
Replication
of DNA+ cell
cycle
↓
coordinated.
A in cell division results
failure
POLYPLOIDY.
in
DNA
polymerase stypes:
Exonuclease
Polymerase
activity activity
-
I 5 3 5
-
3
↓
(aub [removal
eng
adds
enzyme) of RNA
primer 1000
and 7 T
=
nucleotictes
Cthy
mine
peer
minute.
dimen
formed by
unrays]
and 3'- 5'
5 3
-
:
-
3 5
Rate
-> 50
nucleotides/
minute.
-
5 5'- 3' with
: 3
polymerisation
rate
of 2000bp
second.
per
Synthesis leading/continues
->
strand
of
is
quick and one
requires primer.
discon
of logging stand
->
synthesis -
- tinuous and
many
requires primers.
DNA
polymerase III
-
polymerizing
Main
enzyme
TRANSCRIPTION
nee
process
genetic information
of copying
into RNA-
from of
one strand DNA
TRANSCRIPTION
adenosine
of transcription,
but
forms
complement base with
pair
uracil instead
of thymine.
But,
- DNA
In DNA
replication total
of
organism
gets
duplicated
Transcription onlysegment
a
of and
DNA
only
ONE strands is
copied
into
RNA: one
only
strand transcription
in is
template
stand.
Reasons
↳ -
molecules
as
template if
-
RNA produced
code for
molecules with
simultaneously
would
different
be
sequences.
↓ complementary
other
to each
they
Then when
code
for proteins, ...
would
form
-
a double-
proteins
different
- Stranded RNA.
amino ↓
different
acids. would
This
.. the
one
segment of prevent
codes
DNA --
for translation
of
into
two
different RNA
proteins. protein.
:This
complicates
genetic
the
information
transfer machinery.
TRANSCRIPTION UNIT
to
that
segment of DNA
takes
part transcription
in
TERMINATOR
STRUCTURAL
PROMOTER
GENE
strand
Template
stand
and
coding
DNA
dependent RNA
polymerase
in
catalyses polymerisation
the
5'-3'
just one i.e.
direction
polarity
Transcription
start
Site
The strand
that has the
polarity
3- 5' acts
as a
template/non-
strand/anti-sense stand.
coding
stand
other 5'- 3'
with
polacity
RNA
has the same as
sequence
except thymine at the
place of
during
uracil: It
is
displaced
transcription. This
strand
coding
template
strand.
Transcription
start
Site
5'
towards
of structural
end
gene
of transcription unit -
In
polarity
of coding
to
reference
stand.
binding
provides
DNA
sequence
site
for
RNA
polymerase.
Presence
of promoter transcription a
in
unit
template and coding
defines
strand.
28 promoter
with termination
changes position
definition of template and coding'
strand reversed.
Binding
sites RNA
for polymerase
lie within
promoter sequence.
Certain
short
sequences within
promo
-
Heer Sites conserved and called
RECOGNITION SEQUENCE.
Terminator 3'end
at
present
of codingof
strand
defines
-
the end
process of transcription
Meet
gene
unit in e
inheritance.
tRNA
for
DNA or
sequence
coding
-
rRNA
molecule-defines a
gene.
CISTRON-functional
unit
-
of gene.
>
Segmentof DNA
for
coding
a
polypeptide.
STRUCTURAL GENE IN
TRANSCRIPTION UNIT
MONOCISTRONIC POLYCISTRONK
eukaryotes prokaryotes
(mostly or bacteria
mostly.
X X
type different
one
of
on
polypeptide
or
proteins
protein. polypeptides.
They
-
have
↑
interrupted
sequences
coding
il in
genes
eukaryotes
are
split.
sequence
Coding on
expressed sequences
-
called EXONS
appear mature
in or
processed
RNA.
Exons-interrupted
by
I
intervening
sequence that
dont
nature
appear in on
processed
RNA.
Splitgenes-discovered by:
Richard J. Roberts
philip
and
sharp.
TYPES OF RNA:
nee
smaller smallest
·
Longest . .
·
called ·
has structural ·
It is
templatel (forms
ribo soluble on
nuclear -
some) and
adapter
RNA and
messenger Catalytic
or role
genetic
carries acids.
information
by
provided
DNA-
All are
three needed to
synthesize
ina cell.
protein
meeTION
IN PROKARYOTES
n e e
of
transcripting
enzyme.
-
DNA dependent RNA
polymerase -
only
is
transcribe
of one
type
and all
types of
RNA
RNAs-RNA,
all three required
to
ina cell.
protein
synthesize
functional
completely
~ enzyme
catalytic
active
RNA
polymerase -
holoenzyme
e
made
up of polypeptides
(C2 BBN) =
!ON:
or initiation
-
catalysed by
I
factor
factor.
to
binds the
promoter
site
of DNA
-
and
confers specificity.
If transcription
them
father-absent
a
specifically by
Starts care
now
enzyme
at base on DNA.
any
ATION:
2.
(core
- RNA
polymerase enzyme) -
the
only capable of catalysing
&
process of elongation.
3. TERMINATION:
-
Rho
factor (p) required for
-
ermination.
RNA
Polymerase
-
to
binds
promoter
the
of
region the
-
a
polymerises in
template
depended
fashion rule
following of complemen
-tarity.
Also
helps the
opening
-
in
of
elongation
helie and continues
Only a stretch
strant
of
RNA
attached to the
is
enzyme.
Once termination
polymerase reaches
termination
results
in of
transcription.
... Bacterial
transcription:
any processing
"mRNA does not
require
to become active.
2.
Transcription
and translation
take
place
the same
compact
-
in
-went
translation
Many
3. times can
begin
mRNA transer
before fully
much the is
bed.
-
Transcription
and translation can
be bacteria.
coupled in
MeTION
IN EUKARYOTES:
Types enzymes:
transcripting
- -
of
IRNA in nucleus
polymerases
RNA
polymerase organelles.
2. in
Functions:
Synthesis.
Ismall RNA),
conditional
5S rRNA -SMRNA
<small nuclear RNA
Nascent
RNA RNA
synthesized by
polymerase II is called
NA on
primary transcript.
↓
This
contains
both unwanted
sequences (introns)
base and
CAPPING
of
Addition
↓ ↳ ademplate
resides
done
addition
by
-
RNA SPLICING
-
Dozenbeiein
of methyl
GTP to 5'
end -
Catalyst
Guanyly
transferase.
RNA (mRNA)
MESSENGER
-steps:
:Modification
of
5'end
by capping:
->
capping
at5' end occurs
rapidly
after
start
of transcription.
An unusual
nucleotide-Methyl
added
triphosphate
guanosine
is to
This
process by
catalysed Guaryly
transferase.
essential
for formation
mRNA-
of
-
ribosome complex.
Translation
not
possible if
cap is
-
18SrRNA
lacking as
cap identified by
is
of ribosome unit
small
regulatory
RNA.
2.
mmeePOLYADENYLATION:
-
Tailing-addition
of adenylate
residues about 200-300 at 'end
dependent
in
template
in manner
Poly
A
of polymerase.
3. SPLICING:
nee
removal interious
of
and
of
-
process
joining
in order.
of defined
exons a
->
Introns removed small nuclear
by
are
RNACSMRNA) and
complete
protein
called small nuclear ribonucleoproteins
or SURNPs (snumps).
->
Fully
is called
processed mRNA now
and
mRNA
transported of
out
nucleus translation.
for
SPLIT
gene arrangements represent
an ancient
feature
of genome.
Presence introns-reminiscent of
of
antiquity.
splicing
the
Process
of
-
represents
of
dominance
RNA world.
GENETIC CODE:
nee
DNA/RNA-
carry genetic information
RNA-
expressed the
in
form of
made
proteins up of
20
different
acids.
amino
nucleotide
sequence of DNA or mRNA
and acid in
amino
sequence a
polypeptide.
containing
It mRNA coded
an
is
sequence
for
information one acid
amino and
History:
GEORGE GAMOW-Physicist:
coined code.
genetic
-
codons than
required.
Importantdiscovery
-was the
result
by
of experiments
Marshal Heinrich
Niremberg
w. and 5.
Matthai later
by G. know
and
and.
Mathai
Nirenberg
and -
used
poly
synthetic URNA and
deciphered
the code this
translating
as
by
polyphenylalanine.
Hau Gobind Knorana RNA
synthesized
-
molecules with
defined combination
of
bases
(homopolymers and
expolymers.
Using
synthetic
DNA- he
prepared
repeating
known
with
polynucleotide
Ex: CUCUUCUCUCr
Sequence
- -
produced
This
only
two amino acids
leucine serine
(cue) (UCU)
Severo ochoa
dedide enzyme is
xylase-helpful in polymer
rising defined sequences
RNA with
in
template independent manner
i.e. RNA.
of
synthesis
enzymatic
Ser-serine
Phe-phenylalanine
Lew-Leucive
-
Ile-Isoleucine
Met -
Methionine
Val-valine
Ala-Alanine
The-inreonine
Pro-Proline
Tyr-Tyrosine
His-Histidine
cys-cysteine
Gen-Glutamine Tep
-
Tuyptophan
Asparagine Aeg-Arginine
Asm-
Glu-Glutamic acid
Gly-Glycine
code:
Features
of genetic
1. TRIPLET CODE -
Each codon made
of
a re
we
there
adjacent nitrogenous bases.
acids
6)-code
for amino
3-
stop codons-do code
for
not
acid.
any amino
puntuations.
NATURE no
2. COMMALESS -
m e e te
BineR
OF
CODE
Same
inthe
degenerate.
codons: code is
Ex:
3
serine
6 codons
Leucine
ginine
Au
3
Proline
valine
4 codons.
Glycine
Alaneno
Theomne
-
↳G-iotinnine 3
man
Exception
ene
-
generic
b
amino acids
specified by their
single
corresponding
codon
4. UNIVERSAL CODE:code
nearly
is universal
nee
ror-codes
for phenyl-
-
alanine
all
in
organisms.
some have
exceptions been
found in
mitochondria and
protozoa.
CODONNAL:AUG-
5.
codes
for
methionins dual
functions
and was
methionine
codes
for
->
->
acts
as intiator codon.
6.
NAL:Polypeptide chain termin-
termination
signalled
ation
by
three
-
3
codons- UAA (ochere)
NONSENSE
UnG(amber) CODONS
UGA (opal) or
STOP CODONS.
MineRLAPPING
CODON: Each codon
does
overlap
not
independent
is and
US
GE AND
obe:
Example-sickle all anaemia.
-
to
valine.
meete
adapter
molecule
Francis
existence
formulated
by
-
Crick.
(SRNA)
-> Crick
postulated:
* molecule
presence of
an
adapter
A that would
I would read 2. to
binds an
(specific).
* It
acts as an intermediate
chain.
sequence of polypeptide
A all RNAs have the same
basic
structure
(almost).
I over 60 tRNA.
types of
(given by
Kim and
Klug).
This is the actual
structure.
A structure tRNA
secondary
-
of
CLOVER LEAF
was to be
proposed m o re
e
Fee tRNAS:
I
have residue 5'end.
at
guanine
unpaired
2. has CCA
sequence
-
on
3'end.
3. acid
Amino attaches to send.
INITIATOR tRNA.
tRNAs
for stop
->
No codons.
binding
1. Amino
acye synthetase
loop/DHU loop-Isloop
5' end
from
2.
Ribosomal with
loop
binding
bases loop
1st
>
impaired
'end also called
from
-
TPC
loop.
3. Anticodon
loop with I
impaired
bases.
Out
of 7-3 bases act as an
for particular
anticodon a
triplet codon
present
mRNA.
on
TRANSLATION
nee
refers
to
polymerisation
the
of
to
acids
amino
form a
polypeptide.
order and amino
sequence of
-
acids
by
defined the
sequence
bases the mRNA.
of in
cellular
factory
responsible
->
different proteins.
state:
inactive
A Ribosome In
-
two sub-units
Exists as
small
large subunit
sub-unit.
*
For
binding aminoSage
are in
of
P-Site A- site
(Amino
(Peptidyl acye)
Sitz)
STEPS:
e
tRNA
"ATION
OF on
OF tRNA:
-G
Happens
->
presence of
inthe
AMINOACYL- ARNA
enzyme
/
(E)
synthetase I
with ATD.
E,,
Mg2t
AA, +
ATD >
-
AA,-AMP-E,
complete
+ D Pi
AA, AMP-E,
complex with
reacts
tRNA.
Specific
-> Now is
amino
acid
transferred
to
tRNA.
-> As a
result, and AMD
enzyme
are liberated.
↓
This
iscalled AMINOACYLATION of
tRNA.
tRNA,
AA,-AND-E, complex
+
↓
+ AMD +
AA,-tRNA, E,
2. FORMATION
OF POLYPEPTIDE CHAIN:
Three
steps:
1. CHAIN INITIATION:
nee
requires I initiation
factors
·
and
in
perobaryotes
9
eukaryotes.
in
smaller
Binding
(i) mRNA
of
with
↳
30S-mRNA complex.
(In eukaryotes-formation
of
compe
40S-mRNA
30S-mRNA tRNA
with
(ii) BINDING OF meth
memionine
non
formulated
->
is attached RNA
with in
with
eukaryotes and formulated
prokaryotes.
30S-mRNA complec +
tRNA meth
&
its
d GTP
30S -mRNA-tRNAfNeth
(iii) Attachment
of larger subunit of
ribosomes 50s
prokaryotes
in
60s
eukaryotes.
and in
2. CHAIN
ELONGATION:
ar
means
e
the
After of
formation complete
ribosome mRNA-tRNA
complex, an amino
alye
site (A-Site) establishes
acception
next to p-side (Peptide site).
-
mRNA codon next
exposes
to initiation codon.
↓
A tRNA
aminoacye
new
reaches A
complexe site
and codon-anticodon
forms
bonding
↳
requires elongation
This
bonding
factor energy GTP.
and i.e.
A
formed
peptide
bond is
cool
between
group of first
acid
amino (Methionine) and
Nh second amino
group of
acid.
changed tRNAs
two are
If
->
the
of peptide
formation
bond
formation.
TRANSFERASE
(type of ecibozyme)
Here,
elongation factors
are
required.
TRANSLOCATION movement
of
-
ribosome on mRNA.
Ribosome move
from one codon
to the mRNA.
along
net
↓
Amino added
get
acids one
by one.
↓
Translated into
polypeptide
sequences
dictated
by DNA, represented
RNA-
by
A translational
unit inmRNA
sequence of
RNA
flansed
-
polypeptide.
An mRNA also has some additional
that
donot translated
sequences get
↓
These are UTR's
(Untranslated
regions
A
at both 5'end and
percent
also at send after coden.
stop
↓
These are
for
required
EFFICIENT TRANSLATION
PROCESS,
3. CHAIN TERMINATION:
-
The termination
of polypeptide
-
three
signalled by one
of the
A known
GTP-dependent factors
release associated
as
factor
is
termination
with codon.
In eRF,
eukaryotes
Prokaryotes RF, and RFz.
↓
translation
help terminating
in
the
and
releasing complete
polypep-
tide the
from ribosome.
-
REGULATION OF
GENE EXPRESSION:
Regulation
of gene expression
-
broad
In levels:
eukaryotes, four
1.
Transcriptional
level -
of
Formation
transcript.
2.
Processing
level -
Regulation of splicing.
3.
Transport
of mRNA
from nucleus to the
cytoplasm.
4. Translational level.
The to
genes the
in
all-expensed
perform a
particular function
or
set
a
of functions.
In
eukaryotes
related
functionally genes
donot but
represent an
operon
a re
present
at different
sites.
↳
Development
and
differentiation
of
adult
into
embargo organisms
are also
a result
of
the coordinated
regulation
of
of
expression several sets
of genes.
->
It
metabolic, or
physiological
is
environmental condition
that
regulates
the the
expression of gene.
Genes ConstueveReNE (easier
OPERON CONCEPT
nee
Francois Jacob Monod
and
Jacques
I (a biochemist)
geneticist)
a
proposed a model
of gene regulation.
↓
Operon-co-ordinated
group of genes
such as structival
gene,
operator
gene, promote
gene,
regulator gene functions
which
together and
regulate
an
pathway
metabolic as a unit.
↓
operon, top operon,
Ex: lac
his
are
operon, operon
val
operon.
-genes:
:Regulator gine: synthesise a biochemical
which
or
protein
regulator
as
can act
positively
negatively
activation and as
expression.
:It the
controls
activity
of operation
gene.
2.
Operator gene:Gene the
receives
which
product
of regulator gene.
functioning
Se allows the
of the
openon
when not
covered biochemical
by the
3. Promote attachment
Provides
gene:
RNA
for polymerase.
nee
lac-lactose
Lac
operon:
I
gene/inhibitor
regulatory gene
(i)
I
promotergene
I
operation gene
3 structural A
gener polycistnoic
-
gene by
regulated
a common
and
promotion regulatory
gene.
In breakdown lactose
E.coli, of
requires enzymes.
three
↳
a
together
synthesised in co-ordinated
unit
manner
by functional of
DNA lac
operon.
The addition
of lactosestimulates
itself
the
production of enzymes
required
... it
iscalled inducible
system.
-on
genes:
1. STRUCTURAL GENES:
nee
->
lac
z:
codes
for B-galactosidase
-
the
is
which
responsible for
hydrolysisof disaccharide
the
i.e -
lactose-Galactose +
gencose
-
unit.
monomeric
increases
permeability
-
of cell B-galactosi-
the to
des
->
lac a:-codes
for transactylase
can
which
transfe
group -galactoside
acetyl
to
2. OPERATOR GENE:
-en
molecule
-
interacts
with
a
protein
or
regulator molecule which
prevents
structional
the transcription
of genes.
3. PROMOTER GENE:
rase
4. REGULATOR (i)
gene
codes
gene for protein known
-
as Represson protein
↓
it
is
synthesized all the from
time
why
in it is
gene-that
is
which
constitutive
gene is
always
functional.
OPERON -
OFF:
SWITCHED
when
represson protein produced by
to
binds
regulatory
or inhibitor
gene
operator
gene
RNA
polymerase blocked.
. -
Thus, no
transcription.
I
↓
switered
off
Regulation
of lac
open by now
-
control
negative
or
regulation.
If lactess-provided in the
growth
medium
of lactose
bacteria is
transported the
through of
action
permease.
low
->
Avery level
of
of expression
las that to be
present
in
operon
the cell all the time.
otherwise,
lactose cannot the
enter cell.
inducer laction
of
In such as
presence
repressor
the
or allolactose is
inactivated interaction
with
by
inducer This
allows RNA
to
polymerase access
promote and
transcription
proceeds.
genome project (HGP):
thuman
goal
research whose the
program was
compete
mapping
and
understanding
of
all
genes of human
beings.
co-ordinated US
by the
Department
and Institute
of Energy National
the
Health.
of
Then Welcome Trust (UK) joined
the
project as
major partner,
additional
contributions
from
Japan, France,
Germany,
China
and others.
Project was
completed 2003.
in
Way +Gp
mega project?
estimated 9 US
billion
1.
Huge cost
dollars.
(cost US$3.
of sequencing (bp ->
(3x109bp) to be
identified
and
-
sequenced.
3.
Requires a
large number
of
scientists, technicians and
supporting
staff.
4.
Storage of data:
1000
appeare pages each.
typed
-
each has 1000
page
letters
High-speed computational
devices
for
retrieval
storage, and
analysis
of
data made it to
easier do the same.
5. Science
of
also
Bioinformatics developed
this
during period
and
helped 16p.
-HGP:
Identification
of all
approximately
-
in
Determine
the 3 billion
of
the
sequences
-
information
- To this
store in databases.
-
To
improve tools
for data analysis.
Transfer-related
technologies
to other
-
association
-
Bioinformatics close
development of
a
can lead to an
of
understanding
natural
their that
capabilities
be towards
applied solving
can
health-care,
challenges in
agriculture,
energy production,
environmental
remediation.
·
Non-human model such
organisms
as bacteria,
yeast,
Caenorhabditis
elegans
I a
non-pathogenic rematodel,
free-living
Deosophila, plants
like
rice and
etc.
Arabidopsis have been
sequenced.
dologies: Two
major approach:
ESTs
Expressed
1.
sequence Tags:
-
Identifying
all that
a re
genes
expressed as RNAs.
the whole
Sequence Annotation:
sequencing
2.
n e e
contained
that
set
of genome
all the and
coding non-coding
assigning
and later
sequences
regions
different sequence
in
functions.
with
process:
sequencing
Total
DNA -isolated
cell
from
a
↓
converted into random
fragments of relatively
smaller
sizes.
↓
using
closed suitable
vectors.
specialised
↓
into
coming
results
each
of
amplification
piece of DNA
fragment
so that
it
subsequently
could be
sequenced
with
ease.
Bacteria
used bests
commonly and
yeast.
vectors BAC
-
Bacterial artificial
chromosome.
X AC
to
-east
artificial
chromosome.
also
sanger, for
credited
method
developing
determi
for
-nation
of acid
amino
sequence
in
proteins.
These
->
were based on
sequences
some
regions
overlapping present
in them. For this,
of
generation
overlapping
fragments were
for sequencing.
required
↓
this
since isnot
possible
humans,
in specialised computer
were
based
programs
developed
sequence of chromosome I
completed
was
only May
in 2006.
be
sequenced.
Features
of human
Genome:
->
contains
3164.7 nucleotide
million
bases.
Average gene
->
consists 3000 bases.
of
Largest
brown
size varies.
gene
DYSTROPHIN-2.4 million
bases and
->
Total number
estimated
of genes
at
30,000- much lower than
estimates 80,000 to
1,40,000
precious
Almost 99.9% nucleotide bases
genes.
are
exactly
same in all
people.
over
-> are
Functions unknown for
50% discovered
genes.
of
-> Less than I
percent
of generesfor
proteins.
->
Repeated sequences make
up very
human
large portion of the genome.
Repetitive
sequences are stretches
->
of DNA
sequences
that are
repeated
times some 100 1000
to times.
many
-
and evolution.
structure, dynamics
->
chromosome 1 most (2960)
gener
I the
fewest-251.
->
has
->
Scientists
identified
have about
1.4 million
locations
where
single
pair
base DNA
differences
occur
humans.
in
nucleotide
polymorphisms-snips
This
information
promises
revolution
to -
chromosom
-
the
is
process of finding
al locations disease-associated
-
for
sequences
and human
tracing history.
ions and
-
CHALLENGES:
1
Completion
of first phase of human
been
genome project compared
has
antibiotics
because
discovery of
to
base
it has
opened a vast data
of
knowledge
about
various
aspects
of human
genome.
Soon shall be
mapping
2. we
all human
the all
genes,
junk
and
sequences, transposons
DNA.
3. More 1200
than that
cause
genes
common cardiovascular ailments
/
disease
endocrine diabetes,
like
ailments.
After snapshot-will
taking to
be to know metered
the
possible
alter them and remove
posibility.
4.
Simple produce
a
gene defects
-
that
of hereditary
number diseases
can be corrected.
interactions
blu
Possible
study
5. to
genes, proteins
various and the
mechanism
of forming tissues,
tumors
organs,
etc
Fingerprinting
DNA
Technique used
for nucleotide
determining DNA-
sequences of areas
certain
of
to each individual.
unique
fingerprinting-can distinguish
DNA
human
one
from
being
anothe
Exception Monozygotic
twins.
-
humans
99.9% base
of sequences among
is the same.
3x106
They
have
of genere on
in
differences base
sequence.
fingerprinting
involves
identifying
DNA
differences
in some
specific
regions
in
These
repetitive DNA-
from
separated
bulk DNA
genomic different as
peaks
density
during gradientcentrifugation.
Bulk
DNA-major peak.
small
peaks-satellite
[
DNA.
-
I
into the
classified
categories
following
an
the basis
of:
!Base (A:T G:1)
composition or
rich
Length
of segment
2.
3. Number units.
of repetitive
CATEGORIES:
1. Rs-variable number
of
Tandem Repeats
or
MINI SATELLITES.
A
- arranged
small DNA
sequence
many
in
tanderly
numbers.
copy
copy from
number-varies chromo-
-some to chromosome in an
individual.
Number
of repeats show
very
*
(Kilobase)
SSRS
Single Sequence
2.
Repeats
-
STRS-Short
or
Tandem
Repeats
M
ICROSATELLITES
(1
6-p).
-
Basis
of fingerprinting
DNA - UNTR
Isnows
high degree of
polymorphisms)
of printing
finger
DNA was
Technique
by Jeffreys.
the
given
DNA involves Southern
fingerprinting
blot and
hybridisation uses radio-
labelled VNTR
- as
probe.
Steps:
Isolation DNA
of
↓
Digestion
of DNA
using
endonucleases
restriction
of
Separation
DNA
fragments
by
ELECTROPHORESIS/ RFLP
(Restriction
i
Leugenie
Fragment
↓
Transfer of separated
DNA to
fragments synthetic
membranes (nitrocellulose
or
nylon)
to
labelled
Hybridisation
using
UNTR
proble
↳
DNA
of hybridised
Detection
by autoradiography.
fragments
↓
gives
Auto bands
radiogram
of different sizes
↓
These bands a
give
characteristic
pattern for
an individual DNA.
senstivity been
by
->
has increased
of
use
PCR.
Applications:
Paternity
1.
maternity
disputes.
-
2. Criminal
identification
Personal
3.
identification
4.
immigrant.
Close relations
of intending